HG10014241 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10014241
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BRISC and BRCA1-A complex member 1
Location	Chr02: 8824680 .. 8825362 (-)
RNA-Seq Expression	HG10014241
Synteny	HG10014241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTAAAAAAAGAGTTTAGCAGTGATATTGCATCTGCGGAGGCTGCAGTCAGGGGACTTGCTACTTCCCCTTGCAATCATGCTGATCTTACCAGTCTTTTCCGATTAGCTGCTCATGAAGCAAGAAAGTCAACTGCCCAGAATCGTATTCTAAGAGTGGTATTCTTGTTATACCTATAGTCCTAATTTGTCAACACAGCTCAAATATTTATCTATTATCTGAATCTATGAATGAGCCTAGATGATCAGACCTTGAACCTCTTATGTTCCAATGTATGTTTGAAAGATTATATGGATGCATCGTAACCATTTCTTGCATTTAGATTCTTATTTATTGCAGATCGTCGACACGACCCCAACATCAATGGCCTGCGAACCAAAAACTCTTCACTTTAGATGTTATATACCTCCATGAGAAGCCCGGACCTGACAACTGCCCACAGGAGGTGTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTACGAAGGCTACATTTTCGAGAGTGGCCAGGGAGTGGCACGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCGCAGCAGCGAATATCACTAGATGATCTTGACATACCCAAGCCTCTTACAAAGAAATTGCCTCCTGCTGATTCCACCCCTGCAAACGAGGTTGTCCCTGTTACCAGCCAGTGA

mRNA sequence

ATGAAGCTAAAAAAAGAGTTTAGCAGTGATATTGCATCTGCGGAGGCTGCAGTCAGGGGACTTGCTACTTCCCCTTGCAATCATGCTGATCTTACCAGTCTTTTCCGATTAGCTGCTCATGAAGCAAGAAAGTCAACTGCCCAGAATCGTATTCTAAGAGTGATTCTTATTTATTGCAGATCGTCGACACGACCCCAACATCAATGGCCTGCGAACCAAAAACTCTTCACTTTAGATGTTATATACCTCCATGAGAAGCCCGGACCTGACAACTGCCCACAGGAGGTGTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTACGAAGGCTACATTTTCGAGAGTGGCCAGGGAGTGGCACGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCGCAGCAGCGAATATCACTAGATGATCTTGACATACCCAAGCCTCTTACAAAGAAATTGCCTCCTGCTGATTCCACCCCTGCAAACGAGGTTGTCCCTGTTACCAGCCAGTGA

Coding sequence (CDS)

ATGAAGCTAAAAAAAGAGTTTAGCAGTGATATTGCATCTGCGGAGGCTGCAGTCAGGGGACTTGCTACTTCCCCTTGCAATCATGCTGATCTTACCAGTCTTTTCCGATTAGCTGCTCATGAAGCAAGAAAGTCAACTGCCCAGAATCGTATTCTAAGAGTGATTCTTATTTATTGCAGATCGTCGACACGACCCCAACATCAATGGCCTGCGAACCAAAAACTCTTCACTTTAGATGTTATATACCTCCATGAGAAGCCCGGACCTGACAACTGCCCACAGGAGGTGTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTACGAAGGCTACATTTTCGAGAGTGGCCAGGGAGTGGCACGTGTTCTTTACCGTTGCATGTGTCTGTTGTTATCACACCCGCAGCAGCGAATATCACTAGATGATCTTGACATACCCAAGCCTCTTACAAAGAAATTGCCTCCTGCTGATTCCACCCCTGCAAACGAGGTTGTCCCTGTTACCAGCCAGTGA

Protein sequence

MKLKKEFSSDIASAEAAVRGLATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRSSTRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ

Homology

[Close]

BLAST of HG10014241 vs. NCBI nr
Match: KAA0064487.1 (BRISC and BRCA1-A complex member 1 [Cucumis melo var. makuwa] >TYK20103.1 BRISC and BRCA1-A complex member 1 [Cucumis melo var. makuwa])

HSP 1 Score: 334.7 bits (857), Expect = 4.6e-88
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKLKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYC 60
           MKLKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYC
Sbjct: 1   MKLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYC 60

Query: 61  RSSTRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQ 120
           RSSTRPQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQ
Sbjct: 61  RSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQ 120

Query: 121 GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTP NEVVPVTSQ
Sbjct: 121 GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPPNEVVPVTSQ 173

[Close]

BLAST of HG10014241 vs. NCBI nr
Match: XP_008452703.1 (PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.7e-87
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTP NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPPNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. NCBI nr
Match: XP_004141308.1 (BRISC and BRCA1-A complex member 1 [Cucumis sativus] >KGN55320.1 hypothetical protein Csa_012747 [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-85
Identity = 162/171 (94.74%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           ST+PQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPAD+ P NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADTAPPNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. NCBI nr
Match: XP_038897935.1 (BRISC and BRCA1-A complex member 1 [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 158/171 (92.40%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDIA+AEAAVRGL AT+PC+HADLTSLFR+AAHEARKSTAQNRILRVILIYCRS
Sbjct: 87  LKKEFSSDIAAAEAAVRGLGATTPCSHADLTSLFRVAAHEARKSTAQNRILRVILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWP NQK+FT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQG+
Sbjct: 147 STRPQHQWPVNQKVFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGI 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           AR+LYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADS PA EVVPVTSQ
Sbjct: 207 ARILYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSVPAAEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. NCBI nr
Match: XP_022142347.1 (uncharacterized protein LOC111012487 [Momordica charantia])

HSP 1 Score: 317.8 bits (813), Expect = 5.9e-83
Identity = 158/171 (92.40%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDI S EAAVRGL ATS C+HADLTSLFRLAAHEA+KSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIPSTEAAVRGLSATSSCSHADLTSLFRLAAHEAKKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWP NQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHP+QRISLDDLDIPKPLTKKLPP DS P NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPRQRISLDDLDIPKPLTKKLPPTDSVPTNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. ExPASy TrEMBL
Match: A0A5A7VBZ3 (BRISC and BRCA1-A complex member 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002280 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKLKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYC 60
           MKLKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYC
Sbjct: 1   MKLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYC 60

Query: 61  RSSTRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQ 120
           RSSTRPQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQ
Sbjct: 61  RSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQ 120

Query: 121 GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTP NEVVPVTSQ
Sbjct: 121 GVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPPNEVVPVTSQ 173

[Close]

BLAST of HG10014241 vs. ExPASy TrEMBL
Match: A0A1S3BUH3 (BRISC and BRCA1-A complex member 1 OS=Cucumis melo OX=3656 GN=LOC103493644 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTP NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPPNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. ExPASy TrEMBL
Match: A0A0A0L024 (BRISC and BRCA1-A complex member 1 OS=Cucumis sativus OX=3659 GN=Csa_4G645930 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.0e-86
Identity = 162/171 (94.74%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDIASAEAAVRGL ATSPCNHADLTSLFRLAAHE+RKSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIASAEAAVRGLGATSPCNHADLTSLFRLAAHESRKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           ST+PQHQWPANQKLFT DVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPAD+ P NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADTAPPNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. ExPASy TrEMBL
Match: A0A6J1CMH8 (BRISC and BRCA1-A complex member 1 OS=Momordica charantia OX=3673 GN=LOC111012487 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.8e-83
Identity = 158/171 (92.40%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFSSDI S EAAVRGL ATS C+HADLTSLFRLAAHEA+KSTAQNRILR+ILIYCRS
Sbjct: 87  LKKEFSSDIPSTEAAVRGLSATSSCSHADLTSLFRLAAHEAKKSTAQNRILRLILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWP NQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALD VSQYEGYIFESGQGV
Sbjct: 147 STRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDHVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHP+QRISLDDLDIPKPLTKKLPP DS P NEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPRQRISLDDLDIPKPLTKKLPPTDSVPTNEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. ExPASy TrEMBL
Match: A0A6J1FN80 (BRISC and BRCA1-A complex member 1 OS=Cucurbita moschata OX=3662 GN=LOC111446703 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.8e-83
Identity = 158/171 (92.40%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGLA-TSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKK+FSSDIAS EAA+RGL  TS C+HADLTSLFRLAAHEARKSTAQN ILRVILIYCRS
Sbjct: 87  LKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKSTAQNHILRVILIYCRS 146

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           STRPQHQWP NQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV
Sbjct: 147 STRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 206

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPANEVVPVTSQ 173
           ARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+PPADS PANEVVPVTSQ
Sbjct: 207 ARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKVPPADSIPANEVVPVTSQ 257

[Close]

BLAST of HG10014241 vs. TAIR 10
Match: AT4G32960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-56
Identity = 106/162 (65.43%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGLA-TSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEF+SD  SA A++RGL+     + ADLT LFR AA EA+ S AQNRI RVILIYCRS
Sbjct: 90  LKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAKVSRAQNRIFRVILIYCRS 149

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           S RP H+WP NQKLFTLDV+YLH+KP PDNCPQ+VYD+LVDA++ VS+YEGYIFESGQG+
Sbjct: 150 SMRPTHEWPLNQKLFTLDVMYLHDKPSPDNCPQDVYDSLVDAVEHVSEYEGYIFESGQGL 209

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKLPPADSTPA 164
           AR +++ M +LL+HPQQR + DDLDIP  L KK+P  ++  A
Sbjct: 210 ARSVFKPMSMLLTHPQQRCAQDDLDIPMSLAKKVPVTEAASA 251

[Close]

BLAST of HG10014241 vs. TAIR 10
Match: AT4G32970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32960.1); Has 552 Blast hits to 489 proteins in 85 species: Archae - 4; Bacteria - 14; Metazoa - 187; Fungi - 12; Plants - 225; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). )

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-47
Identity = 94/153 (61.44%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 3   LKKEFSSDIASAEAAVRGL-ATSPCNHADLTSLFRLAAHEARKSTAQNRILRVILIYCRS 62
           LKKEFS+D  SA A++R + AT     ADLT LF+ AA EA+ S AQNRILRVIL+YCRS
Sbjct: 86  LKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTSRAQNRILRVILMYCRS 145

Query: 63  STRPQHQWPANQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGV 122
           S RP H WP NQKLFTLDV+YLH+K GPDNC  +VYD+LVDA++ VS+YEGYIFE   G+
Sbjct: 146 SVRPTHDWPINQKLFTLDVMYLHDKSGPDNCTHDVYDSLVDAIERVSEYEGYIFEGSHGL 205

Query: 123 ARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKK 155
           ++ ++R M  LLSHP QR +   +D+PKP  KK
Sbjct: 206 SQSVFRRMSTLLSHPPQRCA--QVDLPKPPAKK 236

The following BLAST results are available for this feature:

BLAST of HG10014241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064487.1	4.6e-88	96.53	BRISC and BRCA1-A complex member 1 [Cucumis melo var. makuwa] >TYK20103.1 BRISC ...	[more]
XP_008452703.1	6.7e-87	96.49	PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis melo]	[more]
XP_004141308.1	1.6e-85	94.74	BRISC and BRCA1-A complex member 1 [Cucumis sativus] >KGN55320.1 hypothetical pr...	[more]
XP_038897935.1	5.3e-84	92.40	BRISC and BRCA1-A complex member 1 [Benincasa hispida]	[more]
XP_022142347.1	5.9e-83	92.40	uncharacterized protein LOC111012487 [Momordica charantia]	[more]

BLAST of HG10014241 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10014241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBZ3	2.2e-88	96.53	BRISC and BRCA1-A complex member 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BUH3	3.2e-87	96.49	BRISC and BRCA1-A complex member 1 OS=Cucumis melo OX=3656 GN=LOC103493644 PE=3 ...	[more]
A0A0A0L024	8.0e-86	94.74	BRISC and BRCA1-A complex member 1 OS=Cucumis sativus OX=3659 GN=Csa_4G645930 PE...	[more]
A0A6J1CMH8	2.8e-83	92.40	BRISC and BRCA1-A complex member 1 OS=Momordica charantia OX=3673 GN=LOC11101248...	[more]
A0A6J1FN80	4.8e-83	92.40	BRISC and BRCA1-A complex member 1 OS=Cucurbita moschata OX=3662 GN=LOC111446703...	[more]

BLAST of HG10014241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32960.1	2.2e-56	65.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G32970.1	2.5e-47	61.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..172
IPR026126	BRISC and BRCA1-A complex member 1	PANTHER	PTHR15660	UNCHARACTERIZED	coord: 3..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10014241.1	HG10014241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045739	positive regulation of DNA repair
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
cellular_component	GO:0016021	integral component of membrane