HG10013795 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013795
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CYSTM domain-containing protein
Location	Chr02: 4742819 .. 4743130 (-)
RNA-Seq Expression	HG10013795
Synteny	HG10013795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCGCTCAGCCTGCAGGTGATTAATCGATTTGATTATATATTTATAATTTATTTGAGATTAATTCTATGCGATTGAATTTATTTATAATTTTTGTTTTATTAACTTTGGAATTTGTTTTATGGGTTTTTTTTGGGGGGGGGGGGTTATGCGTAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGGTAA

mRNA sequence

ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGGTAA

Coding sequence (CDS)

ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCGACATCTTATGCAGCTCCACCGCCGGCGGGGTATCCGACGAGAGACGGCGGAGACTTCTCTCAACCCGCCCCTGTTCCGGCTGAAACCAAGTCTAGAGGCGATGGCTTTTGGAAAGGCTGGTAA

Protein sequence

MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGW

Homology

[Close]

BLAST of HG10013795 vs. NCBI nr
Match: KAG6591814.1 (hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024679.1 hypothetical protein SDJN02_13497 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSS QPA VYPPPST+PTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG
Sbjct: 1  MSSGQPAAVYPPPSTMPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. NCBI nr
Match: XP_022137938.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKG
Sbjct: 1  MSSAQPAAVYPPPSTAPASYAAPPPAGYPTRDGGDFSQPPPVPAETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. NCBI nr
Match: KAA0032928.1 (extensin-like [Cucumis melo var. makuwa] >TYK28072.1 extensin-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGW 58
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGW
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTRDGGDFSQPNPVPAETKSRGDGFWKGW 59

[Close]

BLAST of HG10013795 vs. NCBI nr
Match: XP_031739667.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sativus] >KGN54976.1 hypothetical protein Csa_012002 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKG
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. NCBI nr
Match: KAF3972548.1 (hypothetical protein CMV_003960 [Castanea mollissima])

HSP 1 Score: 84.3 bits (207), Expect = 3.6e-13
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKG
Sbjct: 1  MSSSEPAVAYPPPSTAPAYYVAPPPAGYPTKDGSGYSQNPPPPVETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. ExPASy TrEMBL
Match: A0A6J1CBQ4 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica charantia OX=3673 GN=LOC111009227 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSSAQPA VYPPPST P SYAAPPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKG
Sbjct: 1  MSSAQPAAVYPPPSTAPASYAAPPPAGYPTRDGGDFSQPPPVPAETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. ExPASy TrEMBL
Match: A0A5D3DX21 (Extensin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003360 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGW 58
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTRDGGDFSQP PVPAETKSRGDGFWKGW
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTRDGGDFSQPNPVPAETKSRGDGFWKGW 59

[Close]

BLAST of HG10013795 vs. ExPASy TrEMBL
Match: A0A0A0L4C6 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G618410 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MSSAQPAGV-YPPP-STVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSSAQPAGV YPPP STVPTSY+APPPAGYPTR+GGDFS   PVPAETKSRGDGFWKG
Sbjct: 1  MSSAQPAGVNYPPPSSTVPTSYSAPPPAGYPTREGGDFS--TPVPAETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. ExPASy TrEMBL
Match: A0A2N9H1G7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36239 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.6e-14
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGW 58
          MSS++PA  YPPPST PT Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKGW
Sbjct: 1  MSSSEPAVAYPPPSTAPTYYVAPPPAGYPTKDGSGYSQNPP-PVETKSRGDGFWKGW 56

[Close]

BLAST of HG10013795 vs. ExPASy TrEMBL
Match: A0A7N2LG73 (CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MSSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          MSS++PA  YPPPST P  Y APPPAGYPT+DG  +SQ  P P ETKSRGDGFWKG
Sbjct: 1  MSSSEPAVAYPPPSTAPAYYVAPPPAGYPTKDGSGYSQNPPPPVETKSRGDGFWKG 56

[Close]

BLAST of HG10013795 vs. TAIR 10
Match: AT2G32190.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 7.0e-07
Identity = 28/56 (50.00%), Postives = 30/56 (53.57%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKGW 58
          S  Q +G YP P      Y  PPP GYPT    D S     P ETKS+GDGF KGW
Sbjct: 5  SQNQSSGAYPTPPVSTGPYMTPPPLGYPT---SDISHATVAPVETKSKGDGFLKGW 57

[Close]

BLAST of HG10013795 vs. TAIR 10
Match: AT2G32190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.3e-05
Identity = 27/55 (49.09%), Postives = 29/55 (52.73%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          S  Q +G YP P      Y  PPP GYPT    D S     P ETKS+GDGF KG
Sbjct: 5  SQNQSSGAYPTPPVSTGPYMTPPPLGYPT---SDISHATVAPVETKSKGDGFLKG 56

[Close]

BLAST of HG10013795 vs. TAIR 10
Match: AT3G22240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-05
Identity = 27/50 (54.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 9  VYPPPSTVPTSYAAPPPAGYPTRDG--GDFSQPAPVPAETKSRGDGFWKG 57
          V  P  T    Y +PPP GYPTRD   GD   P     ETKS+GDGFWKG
Sbjct: 11 VEKPSQTSSGPYTSPPPIGYPTRDAMVGD---PPAAAVETKSKGDGFWKG 57

[Close]

BLAST of HG10013795 vs. TAIR 10
Match: AT2G32210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 5.0e-05
Identity = 27/55 (49.09%), Postives = 29/55 (52.73%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRGDGFWKG 57
          S  Q +G YP P      Y APPP GYPT    D S       ETKS+GDGF KG
Sbjct: 5  SQNQSSGAYPTPPVSTGPYVAPPPLGYPT---NDTSHATVATVETKSKGDGFLKG 56

[Close]

BLAST of HG10013795 vs. TAIR 10
Match: AT2G32200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 131 Blast hits to 131 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 4.3e-04
Identity = 28/58 (48.28%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 2  SSAQPAGVYPPPSTVPTSYAAPPPAGYPTRDGGDFSQPAPVPAETKSRG---DGFWKG 57
          S  Q AG YP P      Y APPP GYPT    D +     P ETKS+G   DGF KG
Sbjct: 5  SQNQYAGAYPTPPVSTGPYVAPPPLGYPT---NDTTHATVAPVETKSKGEAADGFLKG 59

The following BLAST results are available for this feature:

BLAST of HG10013795 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591814.1	4.7e-21	94.64	hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022137938.1	3.0e-20	92.86	cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica c...	[more]
KAA0032928.1	5.2e-20	93.22	extensin-like [Cucumis melo var. makuwa] >TYK28072.1 extensin-like [Cucumis melo...	[more]
XP_031739667.1	1.0e-15	87.93	cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sat...	[more]
KAF3972548.1	3.6e-13	71.43	hypothetical protein CMV_003960 [Castanea mollissima]	[more]

BLAST of HG10013795 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBQ4	1.5e-20	92.86	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Momordica...	[more]
A0A5D3DX21	2.5e-20	93.22	Extensin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003360...	[more]
A0A0A0L4C6	4.9e-16	87.93	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G618410 PE=3 ...	[more]
A0A2N9H1G7	4.6e-14	73.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36239 PE=4 SV=1	[more]
A0A7N2LG73	1.7e-13	71.43	CYSTM domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of HG10013795 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32190.2	7.0e-07	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G32190.1	1.3e-05	49.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G22240.1	2.3e-05	54.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G32210.1	5.0e-05	49.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G32200.1	4.3e-04	48.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	PANTHER	PTHR31568:SF60	CYSTEINE-RICH/TRANSMEMBRANE DOMAIN A-LIKE PROTEIN	coord: 4..57
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 4..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013795.1	HG10013795.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane