HG10013789 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013789
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	choline-phosphate cytidylyltransferase 2-like
Location	Chr02: 4684613 .. 4685043 (-)
RNA-Seq Expression	HG10013789
Synteny	HG10013789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGGAATGAATGGGTAGAAAATGCTGATCGCTGGGTAGCTGGGTTTCTAGAGATGTTTGAAGAAGGTTGTCATAAGATGGTGAGTTAATGCACGAATTATCTCTTTTTGCATTTATGCAGTTAGTTTTGAAATAGATGTAGATAAGAAGAAGAAAAAACACAAACTTAAGTTTTGGCGAATCTTGAACTAAAGTCAACGGGTTGCATCTGAAAAATCATGGGTCTGTTTAGGGCACGGCCATCAGAGATAGAATTCAAGAGCGGTTGATGGGGGCGCAGCAGCAGAAATATCTATCAAATGGCAAGGACAGTGACTCAGACCTTGATGAAGAATATTATTATGACGATGAAGACAATGAAGAATATTATGACGATGATGACGATGACTTCTATGAAGAATTCGAGAAAGATGAAAAGAAAAGGTAG

mRNA sequence

ATGCACAGGAATGAATGGGTAGAAAATGCTGATCGCTGGGTAGCTGGGTTTCTAGAGATGTTTGAAGAAGGTTGTCATAAGATGGGCACGGCCATCAGAGATAGAATTCAAGAGCGGTTGATGGGGGCGCAGCAGCAGAAATATCTATCAAATGGCAAGGACAGTGACTCAGACCTTGATGAAGAATATTATTATGACGATGAAGACAATGAAGAATATTATGACGATGATGACGATGACTTCTATGAAGAATTCGAGAAAGATGAAAAGAAAAGGTAG

Coding sequence (CDS)

ATGCACAGGAATGAATGGGTAGAAAATGCTGATCGCTGGGTAGCTGGGTTTCTAGAGATGTTTGAAGAAGGTTGTCATAAGATGGGCACGGCCATCAGAGATAGAATTCAAGAGCGGTTGATGGGGGCGCAGCAGCAGAAATATCTATCAAATGGCAAGGACAGTGACTCAGACCTTGATGAAGAATATTATTATGACGATGAAGACAATGAAGAATATTATGACGATGATGACGATGACTTCTATGAAGAATTCGAGAAAGATGAAAAGAAAAGGTAG

Protein sequence

MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLDEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR

Homology

[Close]

BLAST of HG10013789 vs. NCBI nr
Match: XP_022936193.1 (choline-phosphate cytidylyltransferase 2-like [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD-SDL 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD SDL
Sbjct: 240 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDYSDL 299

Query: 61  DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 300 DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 332

[Close]

BLAST of HG10013789 vs. NCBI nr
Match: KAG7024675.1 (Choline-phosphate cytidylyltransferase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD-SDL 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD SDL
Sbjct: 204 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDYSDL 263

Query: 61  DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 264 DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 296

[Close]

BLAST of HG10013789 vs. NCBI nr
Match: XP_008464646.1 (PREDICTED: choline-phosphate cytidylyltransferase 2-like [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQ KY+SNGKDSDSDLD
Sbjct: 237 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQLKYISNGKDSDSDLD 296

Query: 61  EEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           EEYYYDD+DNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 297 EEYYYDDDDNEEYYDDDDDDFYEEFEKDEKKR 328

[Close]

BLAST of HG10013789 vs. NCBI nr
Match: XP_022976814.1 (choline-phosphate cytidylyltransferase 2-like [Cucurbita maxima] >XP_023535856.1 choline-phosphate cytidylyltransferase 2-like [Cucurbita pepo subsp. pepo] >KAG6591810.1 Choline-phosphate cytidylyltransferase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD-SDL 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD SDL
Sbjct: 240 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDYSDL 299

Query: 61  DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 300 DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 332

[Close]

BLAST of HG10013789 vs. NCBI nr
Match: XP_038898408.1 (choline-phosphate cytidylyltransferase 2-like [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD
Sbjct: 231 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 290

Query: 61  EEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           EEYYYDDEDNEEYY DDDDDFYEEFEKDEKKR
Sbjct: 291 EEYYYDDEDNEEYY-DDDDDFYEEFEKDEKKR 321

[Close]

BLAST of HG10013789 vs. ExPASy Swiss-Prot
Match: Q9ZV56 (Choline-phosphate cytidylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=CCT1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-17
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSD-- 60
           M RNEWVENADRWVAGFLE+FEEGCHKMGTAI D IQERLM  +  + L NG+D D+D  
Sbjct: 230 MLRNEWVENADRWVAGFLEIFEEGCHKMGTAIVDSIQERLMRQKSAERLENGQDDDTDDQ 289

Query: 61  LDEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKK 92
             EEY+  D  ++   DD+D+ FY+E E  E++
Sbjct: 290 FYEEYFDHDMGSD---DDEDEKFYDEEEVKEEE 319

[Close]

BLAST of HG10013789 vs. ExPASy Swiss-Prot
Match: F4JJE0 (Choline-phosphate cytidylyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=CCT2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-16
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLM---GAQQQKYLSNGKDSDS 60
           MH +EW+ENADRWVAGFLEMFEEGCHKMGTAIRD IQ+RLM     + ++ L NG     
Sbjct: 214 MHHDEWLENADRWVAGFLEMFEEGCHKMGTAIRDGIQQRLMRQESEENRRLLQNGLTISK 273

Query: 61  DLDEEYYYDDEDNEE 73
           D D+E   DD +  E
Sbjct: 274 DNDDEQMSDDNEFAE 288

[Close]

BLAST of HG10013789 vs. ExPASy TrEMBL
Match: A0A6J1IPQ3 (choline-phosphate cytidylyltransferase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111477078 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.5e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD-SDL 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD SDL
Sbjct: 240 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDYSDL 299

Query: 61  DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 300 DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 332

[Close]

BLAST of HG10013789 vs. ExPASy TrEMBL
Match: A0A6J1FCK6 (choline-phosphate cytidylyltransferase 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442868 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.5e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD-SDL 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSD SDL
Sbjct: 240 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDYSDL 299

Query: 61  DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 300 DEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 332

[Close]

BLAST of HG10013789 vs. ExPASy TrEMBL
Match: A0A1S3CM33 (choline-phosphate cytidylyltransferase 2-like OS=Cucumis melo OX=3656 GN=LOC103502481 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.5e-41
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQ KY+SNGKDSDSDLD
Sbjct: 237 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQLKYISNGKDSDSDLD 296

Query: 61  EEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           EEYYYDD+DNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 297 EEYYYDDDDNEEYYDDDDDDFYEEFEKDEKKR 328

[Close]

BLAST of HG10013789 vs. ExPASy TrEMBL
Match: A0A0A0L316 (CTP_transf_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G618470 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERL GAQQ KY+SNGKDSDSDLD
Sbjct: 195 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLKGAQQLKYISNGKDSDSDLD 254

Query: 61  EEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           EEYYYDD DNEEYYDDDDDDFYEEFEKDEKKR
Sbjct: 255 EEYYYDD-DNEEYYDDDDDDFYEEFEKDEKKR 285

[Close]

BLAST of HG10013789 vs. ExPASy TrEMBL
Match: A0A6J1J168 (choline-phosphate cytidylyltransferase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111480356 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.4e-36
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSDLD 60
           MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYL NGKDSDSDL+
Sbjct: 228 MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLENGKDSDSDLE 287

Query: 61  EEYYYDDEDNEEYYDDDDDDFYEEFEKDEKKR 93
           EEYYYDD+D EEYY   +D FYEEFEKDEKKR
Sbjct: 288 EEYYYDDDDEEEYY---EDGFYEEFEKDEKKR 316

[Close]

BLAST of HG10013789 vs. TAIR 10
Match: AT2G32260.1 (phosphorylcholine cytidylyltransferase )

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-18
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGAQQQKYLSNGKDSDSD-- 60
           M RNEWVENADRWVAGFLE+FEEGCHKMGTAI D IQERLM  +  + L NG+D D+D  
Sbjct: 230 MLRNEWVENADRWVAGFLEIFEEGCHKMGTAIVDSIQERLMRQKSAERLENGQDDDTDDQ 289

Query: 61  LDEEYYYDDEDNEEYYDDDDDDFYEEFEKDEKK 92
             EEY+  D  ++   DD+D+ FY+E E  E++
Sbjct: 290 FYEEYFDHDMGSD---DDEDEKFYDEEEVKEEE 319

[Close]

BLAST of HG10013789 vs. TAIR 10
Match: AT4G15130.1 (phosphorylcholine cytidylyltransferase2 )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   MHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLM---GAQQQKYLSNGKDSDS 60
           MH +EW+ENADRWVAGFLEMFEEGCHKMGTAIRD IQ+RLM     + ++ L NG     
Sbjct: 214 MHHDEWLENADRWVAGFLEMFEEGCHKMGTAIRDGIQQRLMRQESEENRRLLQNGLTISK 273

Query: 61  DLDEEYYYDDEDNEE 73
           D D+E   DD +  E
Sbjct: 274 DNDDEQMSDDNEFAE 288

The following BLAST results are available for this feature:

BLAST of HG10013789 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936193.1	1.1e-40	98.92	choline-phosphate cytidylyltransferase 2-like [Cucurbita moschata]	[more]
KAG7024675.1	1.1e-40	98.92	Choline-phosphate cytidylyltransferase 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_008464646.1	1.1e-40	96.74	PREDICTED: choline-phosphate cytidylyltransferase 2-like [Cucumis melo]	[more]
XP_022976814.1	1.1e-40	98.92	choline-phosphate cytidylyltransferase 2-like [Cucurbita maxima] >XP_023535856.1...	[more]
XP_038898408.1	2.5e-40	98.91	choline-phosphate cytidylyltransferase 2-like [Benincasa hispida]	[more]

BLAST of HG10013789 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV56	3.1e-17	59.14	Choline-phosphate cytidylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=CCT1...	[more]
F4JJE0	4.5e-16	60.00	Choline-phosphate cytidylyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=CCT2...	[more]

BLAST of HG10013789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPQ3	5.5e-41	98.92	choline-phosphate cytidylyltransferase 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FCK6	5.5e-41	98.92	choline-phosphate cytidylyltransferase 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A1S3CM33	5.5e-41	96.74	choline-phosphate cytidylyltransferase 2-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0L316	8.7e-39	95.65	CTP_transf_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G61...	[more]
A0A6J1J168	2.4e-36	90.22	choline-phosphate cytidylyltransferase 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of HG10013789 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32260.1	2.2e-18	59.14	phosphorylcholine cytidylyltransferase	[more]
AT4G15130.1	3.2e-17	60.00	phosphorylcholine cytidylyltransferase2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10739:SF55	BNAA05G10750D PROTEIN	coord: 1..87
IPR045049	Choline-phosphate cytidylyltransferase Pcy1-like	PANTHER	PTHR10739	CYTIDYLYLTRANSFERASE	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013789.1	HG10013789.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006657	CDP-choline pathway
molecular_function	GO:0004105	choline-phosphate cytidylyltransferase activity