HG10013748 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013748
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Peptide methionine sulfoxide reductase MsrB
Location	Chr02: 4425484 .. 4426416 (+)
RNA-Seq Expression	HG10013748
Synteny	HG10013748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCCTCCTCCTCCTCTTCCCAGAGATCAGATGGCATCCAAGGTTTTTCCTTTCCCTTTCTTTCTGCTTATGACCAACCAAATCTTGCTCTATGATCAAATGAATTCAAGTAATGATTATCCATTGCATAGCACGAAAATTTACACTGACAGAATTTCTCTTACCAATTTGATGCTCTGAATATGTCTAATACAACTAATCAAGAAAGTGAGGAAATGATCTGATGAATTTATTCATTTCCTGATAAGTATTTATAATACATGTACAGTAGTAAATAACCAATGACAAGATGACACCTGTACATATAATAATGTCTTTGATATTGAACATTGAAGAAGCCCAGTTGCCTGTTGGTGCAGAGGCTGGCACTGTGGATTACAAATCTCTAAGCGATGATGAATGGAAGAAGCGGCTCACAGGCGAGCAATTTGTTATTACCCGTAAGAAGGGAACTGAGAGAGCTTTTACCGGGTATACTTCAATAAATTTCTTCAACATAAAACGCCAGAGAAACATTATGATATATAAATTGATCACAGTTCTGATTCTATGTTAACTTTTTACTTCAATTTCAGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGTATATGTTGCGACACACCTCTGTTTGAGTAAATATTTTGACTCTTTTTGTAACTTCTGTCTGCTGCTGGTTTTTCATAGGACTTCCAATAATATGTAATGTTCTCTCTTTCAGATCATCTACTAAATTTGATAGTGGAACTGGTTGGCCATCATATTACCAGCCTGTTGGTGATAATGTCAAATCCAAGCTAGACGTGTCCATCATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGACGGACCACCGCCAACTGGGAAACGTTACTGCATCAATAGGTAA

mRNA sequence

ATGGGCTCCTCCTCCTCCTCTTCCCAGAGATCAGATGGCATCCAAGAAGCCCAGTTGCCTGTTGGTGCAGAGGCTGGCACTGTGGATTACAAATCTCTAAGCGATGATGAATGGAAGAAGCGGCTCACAGGCGAGCAATTTGTTATTACCCGTAAGAAGGGAACTGAGAGAGCTTTTACCGGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGTATATGTTGCGACACACCTCTGTTTGAATCATCTACTAAATTTGATAGTGGAACTGGTTGGCCATCATATTACCAGCCTGTTGGTGATAATGTCAAATCCAAGCTAGACGTGTCCATCATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGACGGACCACCGCCAACTGGGAAACGTTACTGCATCAATAGGTAA

Coding sequence (CDS)

ATGGGCTCCTCCTCCTCCTCTTCCCAGAGATCAGATGGCATCCAAGAAGCCCAGTTGCCTGTTGGTGCAGAGGCTGGCACTGTGGATTACAAATCTCTAAGCGATGATGAATGGAAGAAGCGGCTCACAGGCGAGCAATTTGTTATTACCCGTAAGAAGGGAACTGAGAGAGCTTTTACCGGTGAGTATTGGAACACCAAAACGCCAGGGATATACCACTGTATATGTTGCGACACACCTCTGTTTGAATCATCTACTAAATTTGATAGTGGAACTGGTTGGCCATCATATTACCAGCCTGTTGGTGATAATGTCAAATCCAAGCTAGACGTGTCCATCATTTTCATGCCTCGAGAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTGGGCCATGTATTTGATGACGGACCACCGCCAACTGGGAAACGTTACTGCATCAATAGGTAA

Protein sequence

MGSSSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYCINR

Homology

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BLAST of HG10013748 vs. NCBI nr
Match: XP_038898315.1 (peptide methionine sulfoxide reductase B1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 305.4 bits (781), Expect = 2.6e-79
Identity = 140/145 (96.55%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQR DGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 57  SSSSSQRPDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 116

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKTPGIYHCICC+TPLFESSTKFDSGTGWPSYYQPVGDNVKSKLD+SIIFMPREEVLC
Sbjct: 117 WNTKTPGIYHCICCNTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLC 176

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 177 AVCDAHLGHVFDDGPPPTGKRYCIN 201

[Close]

BLAST of HG10013748 vs. NCBI nr
Match: XP_038898316.1 (peptide methionine sulfoxide reductase B1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 132/145 (91.03%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQR DGIQ        EAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 57  SSSSSQRPDGIQ--------EAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 116

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKTPGIYHCICC+TPLFESSTKFDSGTGWPSYYQPVGDNVKSKLD+SIIFMPREEVLC
Sbjct: 117 WNTKTPGIYHCICCNTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREEVLC 176

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 177 AVCDAHLGHVFDDGPPPTGKRYCIN 193

[Close]

BLAST of HG10013748 vs. NCBI nr
Match: XP_004146010.2 (peptide methionine sulfoxide reductase B1, chloroplastic [Cucumis sativus] >KGN55021.1 hypothetical protein Csa_012810 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 130/148 (87.84%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MGSSSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFT 60
           MG SSSSSQ+ DGI+        EAGTV+YKSLSDDEWKKRLTGEQF ITR+KGTERAFT
Sbjct: 55  MGCSSSSSQKPDGIK--------EAGTVNYKSLSDDEWKKRLTGEQFYITRQKGTERAFT 114

Query: 61  GEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREE 120
           GEYWNTKT GIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLD+SIIFMPREE
Sbjct: 115 GEYWNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREE 174

Query: 121 VLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           VLCAVCDAHLGHVF+DGPPPTGKRYCIN
Sbjct: 175 VLCAVCDAHLGHVFNDGPPPTGKRYCIN 194

[Close]

BLAST of HG10013748 vs. NCBI nr
Match: TYK20280.1 (peptide methionine sulfoxide reductase B1 [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-71
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQ+ DGI+        EAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 3   SSSSSQKPDGIK--------EAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 62

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKT G+YHCICCDTPLFESSTKFDSGTGWPSYYQP+GDNVKSKLD+SIIFMPREEVLC
Sbjct: 63  WNTKTAGLYHCICCDTPLFESSTKFDSGTGWPSYYQPIGDNVKSKLDLSIIFMPREEVLC 122

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 123 AVCDAHLGHVFDDGPPPTGKRYCIN 139

[Close]

BLAST of HG10013748 vs. NCBI nr
Match: XP_008452427.1 (PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-71
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQ+ DGI+        EAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 57  SSSSSQKPDGIK--------EAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 116

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKT G+YHCICCDTPLFESSTKFDSGTGWPSYYQP+GDNVKSKLD+SIIFMPREEVLC
Sbjct: 117 WNTKTAGLYHCICCDTPLFESSTKFDSGTGWPSYYQPIGDNVKSKLDLSIIFMPREEVLC 176

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 177 AVCDAHLGHVFDDGPPPTGKRYCIN 193

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BLAST of HG10013748 vs. ExPASy Swiss-Prot
Match: Q0DC89 (Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MSRB1 PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 8.4e-65
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MGSSSSSSQRSDGIQEAQLPVGAEA-GTVDYK-SLSDDEWKKRLTGEQFVITRKKGTERA 60
           MG++SSSS  S      Q    A+A G  +Y  SL+D+EW+KRLT +Q+ ITR+KGTERA
Sbjct: 55  MGAASSSSSSSSSSPSPQGQAQAQAQGKPNYSTSLTDEEWRKRLTKDQYYITRQKGTERA 114

Query: 61  FTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPR 120
           FTGEYWNTKTPGIYHC+CCDTPLFESSTKFDSGTGWPSYYQP+GDNVK KLD+SIIFMPR
Sbjct: 115 FTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTGWPSYYQPIGDNVKCKLDMSIIFMPR 174

Query: 121 EEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
            EVLCAVCDAHLGHVFDDGP PTGKRYCIN
Sbjct: 175 TEVLCAVCDAHLGHVFDDGPRPTGKRYCIN 204

[Close]

BLAST of HG10013748 vs. ExPASy Swiss-Prot
Match: Q9C8M2 (Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MSRB1 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 7.9e-63
Identity = 106/145 (73.10%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSS + D +QEA+          ++ SLS++EWKKRLT EQ+ ITR+KGTERAFTGEY
Sbjct: 52  SSSSSPKPDNVQEAE--------KNEFASLSENEWKKRLTPEQYYITRQKGTERAFTGEY 111

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WN+KTPG+Y+C+CCDTPLF+SSTKFDSGTGWPSYYQP+G+NVK+KLD+SIIFMPR+EV+C
Sbjct: 112 WNSKTPGVYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVC 171

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVC+AHLGHVFDDGP PTGKRYC+N
Sbjct: 172 AVCNAHLGHVFDDGPRPTGKRYCLN 188

[Close]

BLAST of HG10013748 vs. ExPASy Swiss-Prot
Match: Q8DJK9 (Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=msrB PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 34  SDDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTG 93
           +D EW+ +LT EQ+ +TRKKGTERAFTG YWN K PG+Y C+CC TPLF S TK+DSGTG
Sbjct: 7   TDAEWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTG 66

Query: 94  WPSYYQPVG-DNVKSKLDVSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           WPS++QP+  +N++ + D+S   M R EVLCAVCDAHLGHVF+DGPPPTG RYCIN
Sbjct: 67  WPSFWQPLDPNNIRMERDLS-HGMVRTEVLCAVCDAHLGHVFEDGPPPTGLRYCIN 121

[Close]

BLAST of HG10013748 vs. ExPASy Swiss-Prot
Match: C3K735 (Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=msrB PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-39
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 36  DEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWP 95
           DEWK  L  EQ+ + R KGTER F+G+Y  TKT G+YHCICC+ PLF+S+TKFDSG GWP
Sbjct: 9   DEWKAMLDPEQYNVCRLKGTERPFSGKYNATKTDGVYHCICCNAPLFDSTTKFDSGCGWP 68

Query: 96  SYYQPVGDNVKSKLDVSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           S+Y P+ D+   ++      M R EV CA CDAHLGHVF DGPPPTG RYCIN
Sbjct: 69  SFYAPIADSAMVEIRDVSHGMIRTEVTCAKCDAHLGHVFPDGPPPTGLRYCIN 121

[Close]

BLAST of HG10013748 vs. ExPASy Swiss-Prot
Match: Q2SJP9 (Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=msrB PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-39
Identity = 68/122 (55.74%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 28  VDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTK 87
           +D    SD EW+++LT EQ+ +TR KGTER FTGEY++TK  G+Y C+CC  PLF S  K
Sbjct: 1   MDKVKKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENK 60

Query: 88  FDSGTGWPSYYQPVG-DNVKSKLDVSIIFMPREEVLCAVCDAHLGHVFDDGPPPTGKRYC 147
           +DSG GWPS++ P+  + +  ++D+S + M R E+LC+ CDAHLGHVFDDGP PTG+RYC
Sbjct: 61  YDSGCGWPSFWAPMDKEKITEEIDMSHM-MVRTEILCSKCDAHLGHVFDDGPQPTGQRYC 120

Query: 148 IN 149
           +N
Sbjct: 121 VN 121

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BLAST of HG10013748 vs. ExPASy TrEMBL
Match: A0A0A0L4I4 (Peptide-methionine (R)-S-oxide reductase OS=Cucumis sativus OX=3659 GN=Csa_4G622800 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 130/148 (87.84%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 1   MGSSSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFT 60
           MG SSSSSQ+ DGI+        EAGTV+YKSLSDDEWKKRLTGEQF ITR+KGTERAFT
Sbjct: 55  MGCSSSSSQKPDGIK--------EAGTVNYKSLSDDEWKKRLTGEQFYITRQKGTERAFT 114

Query: 61  GEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREE 120
           GEYWNTKT GIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLD+SIIFMPREE
Sbjct: 115 GEYWNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDLSIIFMPREE 174

Query: 121 VLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           VLCAVCDAHLGHVF+DGPPPTGKRYCIN
Sbjct: 175 VLCAVCDAHLGHVFNDGPPPTGKRYCIN 194

[Close]

BLAST of HG10013748 vs. ExPASy TrEMBL
Match: A0A5D3D9X6 (Peptide-methionine (R)-S-oxide reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004200 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQ+ DGI+        EAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 3   SSSSSQKPDGIK--------EAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 62

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKT G+YHCICCDTPLFESSTKFDSGTGWPSYYQP+GDNVKSKLD+SIIFMPREEVLC
Sbjct: 63  WNTKTAGLYHCICCDTPLFESSTKFDSGTGWPSYYQPIGDNVKSKLDLSIIFMPREEVLC 122

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 123 AVCDAHLGHVFDDGPPPTGKRYCIN 139

[Close]

BLAST of HG10013748 vs. ExPASy TrEMBL
Match: A0A1S3BUL6 (Peptide-methionine (R)-S-oxide reductase OS=Cucumis melo OX=3656 GN=LOC103493463 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 128/145 (88.28%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSSQ+ DGI+        EAGTVDYKSLSDDEWKKRLTGEQF ITR+KGTERAFTGEY
Sbjct: 57  SSSSSQKPDGIK--------EAGTVDYKSLSDDEWKKRLTGEQFYITRQKGTERAFTGEY 116

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WNTKT G+YHCICCDTPLFESSTKFDSGTGWPSYYQP+GDNVKSKLD+SIIFMPREEVLC
Sbjct: 117 WNTKTAGLYHCICCDTPLFESSTKFDSGTGWPSYYQPIGDNVKSKLDLSIIFMPREEVLC 176

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVCDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 177 AVCDAHLGHVFDDGPPPTGKRYCIN 193

[Close]

BLAST of HG10013748 vs. ExPASy TrEMBL
Match: F6H2J9 (Peptide-methionine (R)-S-oxide reductase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g00170 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.9e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MGSSSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFT 60
           MGSS+SSSQ+ D IQ        E G VDY S+SD+EWKKRLTGEQF ITR+KGTERAFT
Sbjct: 50  MGSSASSSQKPDSIQ--------EPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFT 109

Query: 61  GEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREE 120
           GEYWNTKTPG YHCICCDTPLFESSTKFDSGTGWPSYYQP+G+NVKSKLD+SIIFMPR+E
Sbjct: 110 GEYWNTKTPGAYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQE 169

Query: 121 VLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           VLCA CDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 170 VLCAACDAHLGHVFDDGPPPTGKRYCIN 189

[Close]

BLAST of HG10013748 vs. ExPASy TrEMBL
Match: A0A438D6K2 (Peptide-methionine (R)-S-oxide reductase OS=Vitis vinifera OX=29760 GN=MSRB1_0 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.9e-69
Identity = 123/148 (83.11%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MGSSSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFT 60
           MGSS+SSSQ+ D IQ        E G VDY S+SD+EWKKRLTGEQF ITR+KGTERAFT
Sbjct: 50  MGSSASSSQKPDSIQ--------EPGKVDYTSISDEEWKKRLTGEQFYITRQKGTERAFT 109

Query: 61  GEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREE 120
           GEYWNTKTPG YHCICCDTPLFESSTKFDSGTGWPSYYQP+G+NVKSKLD+SIIFMPR+E
Sbjct: 110 GEYWNTKTPGAYHCICCDTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQE 169

Query: 121 VLCAVCDAHLGHVFDDGPPPTGKRYCIN 149
           VLCA CDAHLGHVFDDGPPPTGKRYCIN
Sbjct: 170 VLCAACDAHLGHVFDDGPPPTGKRYCIN 189

[Close]

BLAST of HG10013748 vs. TAIR 10
Match: AT1G53670.1 (methionine sulfoxide reductase B 1 )

HSP 1 Score: 241.1 bits (614), Expect = 5.6e-64
Identity = 106/145 (73.10%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSS + D +QEA+          ++ SLS++EWKKRLT EQ+ ITR+KGTERAFTGEY
Sbjct: 52  SSSSSPKPDNVQEAE--------KNEFASLSENEWKKRLTPEQYYITRQKGTERAFTGEY 111

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WN+KTPG+Y+C+CCDTPLF+SSTKFDSGTGWPSYYQP+G+NVK+KLD+SIIFMPR+EV+C
Sbjct: 112 WNSKTPGVYNCVCCDTPLFDSSTKFDSGTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVC 171

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVC+AHLGHVFDDGP PTGKRYC+N
Sbjct: 172 AVCNAHLGHVFDDGPRPTGKRYCLN 188

[Close]

BLAST of HG10013748 vs. TAIR 10
Match: AT1G53670.2 (methionine sulfoxide reductase B 1 )

HSP 1 Score: 221.1 bits (562), Expect = 6.0e-58
Identity = 99/145 (68.28%), Postives = 121/145 (83.45%), Query Frame = 0


Query: 4   SSSSSQRSDGIQEAQLPVGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEY 63
           SSSSS + D +QEA+          ++ SLS++EWKKRLT EQ+ ITR+KGTERAFTGEY
Sbjct: 52  SSSSSPKPDNVQEAE--------KNEFASLSENEWKKRLTPEQYYITRQKGTERAFTGEY 111

Query: 64  WNTKTPGIYHCICCDTPLFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLC 123
           WN+KTPG+Y+C+CCDTPLF+       GTGWPSYYQP+G+NVK+KLD+SIIFMPR+EV+C
Sbjct: 112 WNSKTPGVYNCVCCDTPLFD-------GTGWPSYYQPIGNNVKTKLDLSIIFMPRQEVVC 171

Query: 124 AVCDAHLGHVFDDGPPPTGKRYCIN 149
           AVC+AHLGHVFDDGP PTGKRYC+N
Sbjct: 172 AVCNAHLGHVFDDGPRPTGKRYCLN 181

[Close]

BLAST of HG10013748 vs. TAIR 10
Match: AT4G04830.1 (methionine sulfoxide reductase B5 )

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-25
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 34  SDDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTG 93
           +++EW+  L+ EQF I R+KGTE+  TGEY      GI+ C+ C TPL++S+TKFDSG G
Sbjct: 11  TEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYKSTTKFDSGCG 70

Query: 94  WPSYYQPVGDNVKSKLDVSIIFMPREEVLCAVCDAHLGHVF--DDGPPPTGKRYCIN 149
           WP++++ +   +    D       R E+ CA CD HLGHVF  +    PT +R+C+N
Sbjct: 71  WPAFFEGLPGAINRTPDPD---GRRTEITCAACDGHLGHVFKGEGYGNPTDERHCVN 124

[Close]

BLAST of HG10013748 vs. TAIR 10
Match: AT4G21850.1 (methionine sulfoxide reductase B9 )

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-24
Identity = 54/130 (41.54%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 21  VGAEAGTVDYKSLSDDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTP 80
           V    G+V  K   D +W+  L+ EQF + R+KGTE    GEY      GIY C  C TP
Sbjct: 8   VAPSTGSVQKK---DQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATP 67

Query: 81  LFESSTKFDSGTGWPSYYQPVGDNVKSKLDVSIIFMPREEVLCAVCDAHLGHVF--DDGP 140
           L++S+TKFDSG GWPS++  +   +K   +       R E+ CA CD HLGHV   +  P
Sbjct: 68  LYKSTTKFDSGCGWPSFFDAIPGAIKQTPEAG---GRRMEITCAACDGHLGHVVKGEGFP 127

Query: 141 PPTGKRYCIN 149
             T +R+C+N
Sbjct: 128 TATDERHCVN 131

[Close]

BLAST of HG10013748 vs. TAIR 10
Match: AT4G21860.1 (methionine sulfoxide reductase B 2 )

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-24
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 35  DDEWKKRLTGEQFVITRKKGTERAFTGEYWNTKTPGIYHCICCDTPLFESSTKFDSGTGW 94
           ++EW+  L+ EQF I R+KGTE   TGEY      GIY C  C TPL++S+TKFDSG GW
Sbjct: 77  EEEWRAILSPEQFRILRQKGTEYPGTGEYNKVFDDGIYCCAGCGTPLYKSTTKFDSGCGW 136

Query: 95  PSYYQPVGDNVKSKLDVSIIFMPREEVLCAVCDAHLGHVF--DDGPPPTGKRYCIN 149
           P+++  +   +    D       R E+ CA C  HLGHVF  +  P PT +R+C+N
Sbjct: 137 PAFFDGLPGAITRTPDPD---GRRIEITCAACGGHLGHVFKGEGFPTPTDERHCVN 189

The following BLAST results are available for this feature:

BLAST of HG10013748 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898315.1	2.6e-79	96.55	peptide methionine sulfoxide reductase B1, chloroplastic isoform X1 [Benincasa h...	[more]
XP_038898316.1	1.4e-72	91.03	peptide methionine sulfoxide reductase B1, chloroplastic isoform X2 [Benincasa h...	[more]
XP_004146010.2	2.6e-71	87.84	peptide methionine sulfoxide reductase B1, chloroplastic [Cucumis sativus] >KGN5...	[more]
TYK20280.1	4.5e-71	88.28	peptide methionine sulfoxide reductase B1 [Cucumis melo var. makuwa]	[more]
XP_008452427.1	4.5e-71	88.28	PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Cucumis mel...	[more]

BLAST of HG10013748 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0DC89	8.4e-65	76.67	Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q9C8M2	7.9e-63	73.10	Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q8DJK9	1.3e-44	67.24	Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (st...	[more]
C3K735	2.7e-39	61.95	Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas fluorescens (strain S...	[more]
Q2SJP9	3.6e-39	55.74	Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis (strain KCTC 2...	[more]

BLAST of HG10013748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4I4	1.3e-71	87.84	Peptide-methionine (R)-S-oxide reductase OS=Cucumis sativus OX=3659 GN=Csa_4G622...	[more]
A0A5D3D9X6	2.2e-71	88.28	Peptide-methionine (R)-S-oxide reductase OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUL6	2.2e-71	88.28	Peptide-methionine (R)-S-oxide reductase OS=Cucumis melo OX=3656 GN=LOC103493463...	[more]
F6H2J9	5.9e-69	83.11	Peptide-methionine (R)-S-oxide reductase OS=Vitis vinifera OX=29760 GN=VIT_19s00...	[more]
A0A438D6K2	5.9e-69	83.11	Peptide-methionine (R)-S-oxide reductase OS=Vitis vinifera OX=29760 GN=MSRB1_0 P...	[more]

BLAST of HG10013748 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53670.1	5.6e-64	73.10	methionine sulfoxide reductase B 1	[more]
AT1G53670.2	6.0e-58	68.28	methionine sulfoxide reductase B 1	[more]
AT4G04830.1	6.7e-25	43.59	methionine sulfoxide reductase B5	[more]
AT4G21850.1	2.0e-24	41.54	methionine sulfoxide reductase B9	[more]
AT4G21860.1	4.4e-24	44.83	methionine sulfoxide reductase B 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002579	Peptide methionine sulphoxide reductase MrsB	TIGRFAM	TIGR00357	TIGR00357	coord: 33..148 e-value: 1.1E-51 score: 172.3
IPR002579	Peptide methionine sulphoxide reductase MrsB	PFAM	PF01641	SelR	coord: 37..148 e-value: 6.1E-48 score: 161.8
IPR002579	Peptide methionine sulphoxide reductase MrsB	PROSITE	PS51790	MSRB	coord: 35..149 score: 67.010681
None	No IPR available	GENE3D	2.170.150.20	Peptide methionine sulfoxide reductase.	coord: 24..149 e-value: 4.8E-54 score: 183.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR10173:SF52	METHIONINE-R-SULFOXIDE REDUCTASE B1	coord: 15..148
IPR028427	Peptide methionine sulfoxide reductase	PANTHER	PTHR10173	METHIONINE SULFOXIDE REDUCTASE	coord: 15..148
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 33..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013748.1	HG10013748.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0030091	protein repair
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0033743	peptide-methionine (R)-S-oxide reductase activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor