HG10013694 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013694
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr02: 3853955 .. 3854173 (+)
RNA-Seq ExpressionHG10013694
SyntenyHG10013694
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGCACCCATTCGAATGATGAAGTTCTTATTCTTTTGCTTTATTATTCTAATAATTTTGCAGCCATGTTTGAGCTTTGGAGCTCCTCCTTCTTCTCCAGGTGGGTTTATGGAAAGTGCTAGAGAAGCATTAATGGCTAGCCTTCGTACGCAAGGTGGAAAGCGCTTTCAGGTGGAGCGGACTAGCCCCGGAGGACCTGATCAACACCACCACTGA

mRNA sequence

ATGGGCGCACCCATTCGAATGATGAAGTTCTTATTCTTTTGCTTTATTATTCTAATAATTTTGCAGCCATGTTTGAGCTTTGGAGCTCCTCCTTCTTCTCCAGGTGGGTTTATGGAAAGTGCTAGAGAAGCATTAATGGCTAGCCTTCGTACGCAAGGTGGAAAGCGCTTTCAGGTGGAGCGGACTAGCCCCGGAGGACCTGATCAACACCACCACTGA

Coding sequence (CDS)

ATGGGCGCACCCATTCGAATGATGAAGTTCTTATTCTTTTGCTTTATTATTCTAATAATTTTGCAGCCATGTTTGAGCTTTGGAGCTCCTCCTTCTTCTCCAGGTGGGTTTATGGAAAGTGCTAGAGAAGCATTAATGGCTAGCCTTCGTACGCAAGGTGGAAAGCGCTTTCAGGTGGAGCGGACTAGCCCCGGAGGACCTGATCAACACCACCACTGA

Protein sequence

MGAPIRMMKFLFFCFIILIILQPCLSFGAPPSSPGGFMESAREALMASLRTQGGKRFQVERTSPGGPDQHHH
Homology
BLAST of HG10013694 vs. NCBI nr
Match: KGN55082.1 (hypothetical protein Csa_012608 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.4e-16
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 3  APIRMMKFLFFCFIILIILQPCLSFGA------PPSS--PGGFMESAREALMASLRTQGG 62
          A I M+KF F CFI +IIL P LSFG+      PPSS  P GFMESA++ALMASL+ +GG
Sbjct: 4  AIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQRRGG 63

Query: 63 KRFQVERTSPGGPDQHHH 73
          K FQV+RTSPGGPDQHHH
Sbjct: 64 KPFQVQRTSPGGPDQHHH 81

BLAST of HG10013694 vs. NCBI nr
Match: KAG6607905.1 (hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 1  MGAPIRMMKFLFFCFIILIILQPCLSFGAPPSSPGGFMESAREALMASLRTQGGKRFQVE 60
          MGA I +   L  CF I+IIL P LSFGAP  SP GFMESAREALMASL  QG +RFQV+
Sbjct: 1  MGAAIGVK--LLLCFFIVIILVPFLSFGAP--SPSGFMESAREALMASLHRQGERRFQVQ 60

Query: 61 RTSPGGPDQHHH 73
          R++PGGPDQHHH
Sbjct: 61 RSTPGGPDQHHH 68

BLAST of HG10013694 vs. ExPASy TrEMBL
Match: A0A0A0L3B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 3  APIRMMKFLFFCFIILIILQPCLSFGA------PPSS--PGGFMESAREALMASLRTQGG 62
          A I M+KF F CFI +IIL P LSFG+      PPSS  P GFMESA++ALMASL+ +GG
Sbjct: 4  AIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQRRGG 63

Query: 63 KRFQVERTSPGGPDQHHH 73
          K FQV+RTSPGGPDQHHH
Sbjct: 64 KPFQVQRTSPGGPDQHHH 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55082.14.4e-1666.67hypothetical protein Csa_012608 [Cucumis sativus][more]
KAG6607905.14.9e-1569.44hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3B32.1e-1666.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013694.1HG10013694.1mRNA