HG10013654 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10013654
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUPF0329 protein ECU05_1680/ECU11_0050
LocationChr02: 3468890 .. 3469042 (-)
RNA-Seq ExpressionHG10013654
SyntenyHG10013654
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCTTGTTCCAATGTCCTTGTTGCTCTTGTTTTTGCTTCATGAAGCCGAAACAAGGCAAGCCAAAGGCTGAAGATAATCAACCAAAAAAAGAAGGCAAAAAGGAAGATGAAGCACAAGCACCACCCAAGGAAGAGAAGAAAGAATAA

mRNA sequence

ATGAAGTTCTTGTTCCAATGTCCTTGTTGCTCTTGTTTTTGCTTCATGAAGCCGAAACAAGGCAAGCCAAAGGCTGAAGATAATCAACCAAAAAAAGAAGGCAAAAAGGAAGATGAAGCACAAGCACCACCCAAGGAAGAGAAGAAAGAATAA

Coding sequence (CDS)

ATGAAGTTCTTGTTCCAATGTCCTTGTTGCTCTTGTTTTTGCTTCATGAAGCCGAAACAAGGCAAGCCAAAGGCTGAAGATAATCAACCAAAAAAAGAAGGCAAAAAGGAAGATGAAGCACAAGCACCACCCAAGGAAGAGAAGAAAGAATAA

Protein sequence

MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKEDEAQAPPKEEKKE
Homology
BLAST of HG10013654 vs. NCBI nr
Match: XP_038897115.1 (uncharacterized protein LOC120085277 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKEDEAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA+DNQPKKE KKED+ QAPPKEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAQDNQPKKEAKKEDQPQAPPKEEKKE 50

BLAST of HG10013654 vs. NCBI nr
Match: XP_011654067.1 (uncharacterized protein LOC105435295 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-12
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKA---EDNQPKKEGKKEDEAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA     NQPKKE KKED+   PPKEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAAQDHQNQPKKEAKKEDKPAPPPKEEKKE 53

BLAST of HG10013654 vs. NCBI nr
Match: XP_022568949.1 (poly [ADP-ribose] polymerase 2 isoform X1 [Brassica napus])

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. NCBI nr
Match: XP_009127136.1 (UPF0329 protein ECU05_1680/ECU11_0050 [Brassica rapa] >XP_013618683.1 PREDICTED: UPF0329 protein ECU05_1680/ECU11_0050 [Brassica oleracea var. oleracea] >XP_013674744.1 UPF0329 protein ECU05_1680/ECU11_0050-like [Brassica napus] >XP_013715145.1 UPF0329 protein ECU05_1680/ECU11_0050 [Brassica napus] >XP_018458639.1 PREDICTED: UPF0329 protein ECU05_1680/ECU11_0050 [Raphanus sativus] >KAF3539044.1 hypothetical protein F2Q69_00019665 [Brassica cretica] >KAF8050610.1 hypothetical protein N665_1923s0001 [Sinapis alba] >KAG5409318.1 hypothetical protein IGI04_005637 [Brassica rapa subsp. trilocularis] >KAF8102854.1 hypothetical protein N665_0191s0005 [Sinapis alba] >RID74294.1 hypothetical protein BRARA_B01400 [Brassica rapa])

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. NCBI nr
Match: KAG2280627.1 (hypothetical protein Bca52824_051847 [Brassica carinata] >VDD21656.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. ExPASy TrEMBL
Match: A0A398ACC4 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA02T06139Z PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. ExPASy TrEMBL
Match: A0A3P6D1Q5 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC2T07920H PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. ExPASy TrEMBL
Match: M4E1M8 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. ExPASy TrEMBL
Match: A0A0D3AMC4 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106325202 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. ExPASy TrEMBL
Match: A0A6J0LG75 (UPF0329 protein ECU05_1680/ECU11_0050 OS=Raphanus sativus OX=3726 GN=LOC108829483 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKAEDNQPKKEGKKED---EAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPKQGKPKA D++PK+E KKE+   E +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKEEKKEEKKE 53

BLAST of HG10013654 vs. TAIR 10
Match: AT5G53880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-11
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKQGKPKA-EDNQPKKEGKKEDEAQAPPKEEKKE 51
          MKFLFQCPCCSCFCFMKPK GKPKA  D +PK+E KKE + +   KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKPGKPKAVGDTKPKEEKKKEVKKEEIKKEEKKE 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897115.15.2e-1692.00uncharacterized protein LOC120085277 [Benincasa hispida][more]
XP_011654067.14.6e-1281.13uncharacterized protein LOC105435295 [Cucumis sativus][more]
XP_022568949.13.6e-0973.58poly [ADP-ribose] polymerase 2 isoform X1 [Brassica napus][more]
XP_009127136.13.6e-0973.58UPF0329 protein ECU05_1680/ECU11_0050 [Brassica rapa] >XP_013618683.1 PREDICTED:... [more]
KAG2280627.13.6e-0973.58hypothetical protein Bca52824_051847 [Brassica carinata] >VDD21656.1 unnamed pro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A398ACC41.8e-0973.58Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA02T06139Z PE=4 SV=... [more]
A0A3P6D1Q51.8e-0973.58Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC2T07920H PE=4 SV=1[more]
M4E1M81.8e-0973.58Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
A0A0D3AMC41.8e-0973.58Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10632520... [more]
A0A6J0LG751.8e-0973.58UPF0329 protein ECU05_1680/ECU11_0050 OS=Raphanus sativus OX=3726 GN=LOC10882948... [more]
Match NameE-valueIdentityDescription
AT5G53880.11.9e-1172.55unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10013654.1HG10013654.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane