HG10013256 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013256
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr01: 28200871 .. 28201683 (+)
RNA-Seq Expression	HG10013256
Synteny	HG10013256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGAAGTTCAGAGCTGGGACCCTACAAGGGTAACATGGATATCGAATTTCAGAGCTTCTTCCAGATGGATTATGAGGTGTGTGGTTTGGCCGGCGTCTGGGGGACGATATTACATTCACATTCCGGCGGGGCAATCGGAGCAGGGTTGGTTTTCTTTTCTCGAATTGCTAAAAGGTTTTCTAAAGCATGGTGAGTTCGAAGGTTGGCAAGAATTGCAAAGAAAGGCAGCGATACATGCTCGAAATAATTTCTCAATACCTGAGTCATCGTCCTACAAGATTCATAACTTTAGTTATGCAGAGATCGTTAAGAAAAATAGTATTCCTCAAACCTCTGTTTCATCATCGCAAAAACAGAGCATCTTTAATGTAAAGAAGAGCAAGGGTCTACTATCCCCTATTGCAACGATACAAAAGCAGAGTTCAAACTTTGTTTGGACCATGAAGAATTACAATGTTCTGGTGGAGGATTTTAGCAACCTCTGGATTATTTCAAGATTGTTCATTTTCAATGAGTGGAAGGATATAGCAATTTATTTGGAGGAATACTTTCAAACTAAAGTTATTATTAATCCTTTGTTTGCTGATAATGCTCTTATCAAATTTGATCAAGGAATAATGGAGAAATTAATTGAGAACCCAGGGAAATGGCAGGATTTCGGCCTTTTTCACTTACAATTTGGAAAATGGAACAAAGATAGACACAGTGGACCGTTGGTAACTGAAGGTTTTGGTGGATGGATCTCAATCAAAAATCTACCTCTTGACTACTGGAGGAGAAGTACATTTAAAGCTGTAGGAGCATAA

mRNA sequence

ATGGATATTGAAGTTCAGAGCTGGGACCCTACAAGGGTAACATGGATATCGAATTTCAGAGCTTCTTCCAGATGGATTATGAGGTGTGTGGTTTGGCCGGCGTCTGGGGGACGATATTACATTCACATTCCGGCGGGGCAATCGGAGCAGGGTTGGTTTTCTTTTCTCGAATTGCTAAAAGGTTTTCTAAAGCATGGTGAGTTCGAAGGTTGGCAAGAATTGCAAAGAAAGGCAGCGATACATGCTCGAAATAATTTCTCAATACCTGAGTCATCGTCCTACAAGATTCATAACTTTAGTTATGCAGAGATCGTTAAGAAAAATAGTATTCCTCAAACCTCTGTTTCATCATCGCAAAAACAGAGCATCTTTAATGTAAAGAAGAGCAAGGGTCTACTATCCCCTATTGCAACGATACAAAAGCAGAGTTCAAACTTTGTTTGGACCATGAAGAATTACAATGTTCTGGTGGAGGATTTTAGCAACCTCTGGATTATTTCAAGATTGTTCATTTTCAATGAGTGGAAGGATATAGCAATTTATTTGGAGGAATACTTTCAAACTAAAGTTATTATTAATCCTTTGTTTGCTGATAATGCTCTTATCAAATTTGATCAAGGAATAATGGAGAAATTAATTGAGAACCCAGGGAAATGGCAGGATTTCGGCCTTTTTCACTTACAATTTGGAAAATGGAACAAAGATAGACACAGTGGACCGTTGGTAACTGAAGGTTTTGGTGGATGGATCTCAATCAAAAATCTACCTCTTGACTACTGGAGGAGAAGTACATTTAAAGCTGTAGGAGCATAA

Coding sequence (CDS)

ATGGATATTGAAGTTCAGAGCTGGGACCCTACAAGGGTAACATGGATATCGAATTTCAGAGCTTCTTCCAGATGGATTATGAGGTGTGTGGTTTGGCCGGCGTCTGGGGGACGATATTACATTCACATTCCGGCGGGGCAATCGGAGCAGGGTTGGTTTTCTTTTCTCGAATTGCTAAAAGGTTTTCTAAAGCATGGTGAGTTCGAAGGTTGGCAAGAATTGCAAAGAAAGGCAGCGATACATGCTCGAAATAATTTCTCAATACCTGAGTCATCGTCCTACAAGATTCATAACTTTAGTTATGCAGAGATCGTTAAGAAAAATAGTATTCCTCAAACCTCTGTTTCATCATCGCAAAAACAGAGCATCTTTAATGTAAAGAAGAGCAAGGGTCTACTATCCCCTATTGCAACGATACAAAAGCAGAGTTCAAACTTTGTTTGGACCATGAAGAATTACAATGTTCTGGTGGAGGATTTTAGCAACCTCTGGATTATTTCAAGATTGTTCATTTTCAATGAGTGGAAGGATATAGCAATTTATTTGGAGGAATACTTTCAAACTAAAGTTATTATTAATCCTTTGTTTGCTGATAATGCTCTTATCAAATTTGATCAAGGAATAATGGAGAAATTAATTGAGAACCCAGGGAAATGGCAGGATTTCGGCCTTTTTCACTTACAATTTGGAAAATGGAACAAAGATAGACACAGTGGACCGTTGGTAACTGAAGGTTTTGGTGGATGGATCTCAATCAAAAATCTACCTCTTGACTACTGGAGGAGAAGTACATTTAAAGCTGTAGGAGCATAA

Protein sequence

MDIEVQSWDPTRVTWISNFRASSRWIMRCVVWPASGGRYYIHIPAGQSEQGWFSFLELLKGFLKHGEFEGWQELQRKAAIHARNNFSIPESSSYKIHNFSYAEIVKKNSIPQTSVSSSQKQSIFNVKKSKGLLSPIATIQKQSSNFVWTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQTKVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGGWISIKNLPLDYWRRSTFKAVGA

Homology

[Close]

BLAST of HG10013256 vs. NCBI nr
Match: KAA0047189.1 (hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739.1 hypothetical protein E5676_scaffold1280G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-26
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 148 WTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQTKVIINPLFADNALIKFDQG 207
           W ++N  V+  +F NLWII++LF F++ + I   LE YFQ K++INPLF +NALI  D+G
Sbjct: 51  WVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALINLDEG 110

Query: 208 IMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGGWISIKNL 256
            ++ LI N GKWQ  G F+L+F KW+K ++S PL  +G+GGW+ IKNL
Sbjct: 111 SIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGYGGWLKIKNL 158

[Close]

BLAST of HG10013256 vs. NCBI nr
Match: KAA0063979.1 (hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-24
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 169 LFIFNEWKDIAIYLEEYFQTKVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQ 228
           LF F++W +I+++LE+ FQ K I NPLFAD A++K  QG +E L  N GKW D+G +HL 
Sbjct: 97  LFTFDDWNEISLFLEDLFQVKNISNPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLL 156

Query: 229 FGKWNKDRHSGPLVTEGFGGWISIKNLPLDYWRRSTFKAVGA 271
           F KW + + S P + +GF GW+SIKN PLD WR    + +GA
Sbjct: 157 FEKWGEAKRSMPSLIKGFEGWLSIKNFPLDLWRTDILEVIGA 198

[Close]

BLAST of HG10013256 vs. NCBI nr
Match: KAA0054135.1 (hypothetical protein E6C27_scaffold131G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-22
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           KV+INPLFA+NAL  FDQG ++ LIE PGKWQ+FG F+L+F KW+K     PL  +G+GG
Sbjct: 71  KVLINPLFAENALTDFDQGTLDDLIEQPGKWQEFGAFYLKFMKWDKLFCCRPLYAKGYGG 130

Query: 249 WISIKNLPLDYWRRSTFK 267
           W+SIKNLPLDYW   TF+
Sbjct: 131 WLSIKNLPLDYWNNQTFE 148

[Close]

BLAST of HG10013256 vs. NCBI nr
Match: TYK30603.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-20
Identity = 71/262 (27.10%), Postives = 107/262 (40.84%), Query Frame = 0


Query: 9   DPTRVTWISNFRASSRWIMRCVVWPASGGRYYIHIPAGQSEQGWFSFLELLKGFLKHGEF 68
           D +  T ++ F++ S WI+RCV    SG   ++H+ +G ++QGW S              
Sbjct: 73  DASGATRLTKFKSPSGWILRCVTRDFSGHLSFVHVFSGTAKQGWIS-------------- 132

Query: 69  EGWQELQRKAAIHARNNFSIPESSSYKIHNFSYAEIVKKNSIPQTSVSSSQKQSIFNVKK 128
                     A   R  +S    +S  +H                      + S   + K
Sbjct: 133 ----------AQATRTRWSHESINSSVLH-------------------FKNRASRHRLLK 192

Query: 129 SKGLLSPIATIQKQSSNFVWTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQT 188
           S   ++ +    K S                                  I  +LE+ F+ 
Sbjct: 193 SSAKINTLLLTSKTSIRI-------------------------------IIGFLEDLFEV 252

Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           K+ INP F + A  K + G +E L+    KW ++G FHL F KW+   HS P   +GF G
Sbjct: 253 KITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPSSIKGFRG 260

Query: 249 WISIKNLPLDYWRRSTFKAVGA 271
           W+SIKNLPLD WRR+ F+ +GA
Sbjct: 313 WLSIKNLPLDLWRRAIFEVIGA 260

[Close]

BLAST of HG10013256 vs. NCBI nr
Match: KAA0038211.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-20
Identity = 71/262 (27.10%), Postives = 107/262 (40.84%), Query Frame = 0


Query: 9   DPTRVTWISNFRASSRWIMRCVVWPASGGRYYIHIPAGQSEQGWFSFLELLKGFLKHGEF 68
           D +  T ++ F++ S WI+RCV    SG   ++H+ +G ++QGW S              
Sbjct: 73  DASGATRLTKFKSPSGWILRCVTRDFSGHLSFVHVFSGTAKQGWIS-------------- 132

Query: 69  EGWQELQRKAAIHARNNFSIPESSSYKIHNFSYAEIVKKNSIPQTSVSSSQKQSIFNVKK 128
                     A   R  +S    +S  +H                      + S   + K
Sbjct: 133 ----------AQATRTRWSHESINSSVLH-------------------FKNRASRHRLLK 192

Query: 129 SKGLLSPIATIQKQSSNFVWTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQT 188
           S   ++ +    K S                                  I  +LE+ F+ 
Sbjct: 193 SPAKINTLLLTSKTSIRI-------------------------------IIGFLEDLFEV 252

Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           K+ INP F + A  K + G +E L+    KW ++G FHL F KW+   HS P   +GF G
Sbjct: 253 KITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPSSIKGFRG 260

Query: 249 WISIKNLPLDYWRRSTFKAVGA 271
           W+SIKNLPLD WRR+ F+ +GA
Sbjct: 313 WLSIKNLPLDLWRRAIFEVIGA 260

[Close]

BLAST of HG10013256 vs. ExPASy TrEMBL
Match: A0A5A7U128 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00090 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 148 WTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQTKVIINPLFADNALIKFDQG 207
           W ++N  V+  +F NLWII++LF F++ + I   LE YFQ K++INPLF +NALI  D+G
Sbjct: 51  WVIRNSEVISTNFENLWIITKLFAFDDRRKIRKMLENYFQAKIVINPLFDENALINLDEG 110

Query: 208 IMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGGWISIKNL 256
            ++ LI N GKWQ  G F+L+F KW+K ++S PL  +G+GGW+ IKNL
Sbjct: 111 SIKDLICNEGKWQVLGSFYLKFEKWDKHKYSRPLTMKGYGGWLKIKNL 158

[Close]

BLAST of HG10013256 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 169 LFIFNEWKDIAIYLEEYFQTKVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQ 228
           LF F++W +I+++LE+ FQ K I NPLFAD A++K  QG +E L  N GKW D+G +HL 
Sbjct: 97  LFTFDDWNEISLFLEDLFQVKNISNPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLL 156

Query: 229 FGKWNKDRHSGPLVTEGFGGWISIKNLPLDYWRRSTFKAVGA 271
           F KW + + S P + +GF GW+SIKN PLD WR    + +GA
Sbjct: 157 FEKWGEAKRSMPSLIKGFEGWLSIKNFPLDLWRTDILEVIGA 198

[Close]

BLAST of HG10013256 vs. ExPASy TrEMBL
Match: A0A5A7UK83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00510 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-23
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           KV+INPLFA+NAL  FDQG ++ LIE PGKWQ+FG F+L+F KW+K     PL  +G+GG
Sbjct: 71  KVLINPLFAENALTDFDQGTLDDLIEQPGKWQEFGAFYLKFMKWDKLFCCRPLYAKGYGG 130

Query: 249 WISIKNLPLDYWRRSTFK 267
           W+SIKNLPLDYW   TF+
Sbjct: 131 WLSIKNLPLDYWNNQTFE 148

[Close]

BLAST of HG10013256 vs. ExPASy TrEMBL
Match: A0A5D3E3A5 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00110 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 71/262 (27.10%), Postives = 107/262 (40.84%), Query Frame = 0


Query: 9   DPTRVTWISNFRASSRWIMRCVVWPASGGRYYIHIPAGQSEQGWFSFLELLKGFLKHGEF 68
           D +  T ++ F++ S WI+RCV    SG   ++H+ +G ++QGW S              
Sbjct: 73  DASGATRLTKFKSPSGWILRCVTRDFSGHLSFVHVFSGTAKQGWIS-------------- 132

Query: 69  EGWQELQRKAAIHARNNFSIPESSSYKIHNFSYAEIVKKNSIPQTSVSSSQKQSIFNVKK 128
                     A   R  +S    +S  +H                      + S   + K
Sbjct: 133 ----------AQATRTRWSHESINSSVLH-------------------FKNRASRHRLLK 192

Query: 129 SKGLLSPIATIQKQSSNFVWTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQT 188
           S   ++ +    K S                                  I  +LE+ F+ 
Sbjct: 193 SSAKINTLLLTSKTSIRI-------------------------------IIGFLEDLFEV 252

Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           K+ INP F + A  K + G +E L+    KW ++G FHL F KW+   HS P   +GF G
Sbjct: 253 KITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPSSIKGFRG 260

Query: 249 WISIKNLPLDYWRRSTFKAVGA 271
           W+SIKNLPLD WRR+ F+ +GA
Sbjct: 313 WLSIKNLPLDLWRRAIFEVIGA 260

[Close]

BLAST of HG10013256 vs. ExPASy TrEMBL
Match: A0A5A7T996 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00480 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-20
Identity = 71/262 (27.10%), Postives = 107/262 (40.84%), Query Frame = 0


Query: 9   DPTRVTWISNFRASSRWIMRCVVWPASGGRYYIHIPAGQSEQGWFSFLELLKGFLKHGEF 68
           D +  T ++ F++ S WI+RCV    SG   ++H+ +G ++QGW S              
Sbjct: 73  DASGATRLTKFKSPSGWILRCVTRDFSGHLSFVHVFSGTAKQGWIS-------------- 132

Query: 69  EGWQELQRKAAIHARNNFSIPESSSYKIHNFSYAEIVKKNSIPQTSVSSSQKQSIFNVKK 128
                     A   R  +S    +S  +H                      + S   + K
Sbjct: 133 ----------AQATRTRWSHESINSSVLH-------------------FKNRASRHRLLK 192

Query: 129 SKGLLSPIATIQKQSSNFVWTMKNYNVLVEDFSNLWIISRLFIFNEWKDIAIYLEEYFQT 188
           S   ++ +    K S                                  I  +LE+ F+ 
Sbjct: 193 SPAKINTLLLTSKTSIRI-------------------------------IIGFLEDLFEV 252

Query: 189 KVIINPLFADNALIKFDQGIMEKLIENPGKWQDFGLFHLQFGKWNKDRHSGPLVTEGFGG 248
           K+ INP F + A  K + G +E L+    KW ++G FHL F KW+   HS P   +GF G
Sbjct: 253 KITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINHSRPSSIKGFRG 260

Query: 249 WISIKNLPLDYWRRSTFKAVGA 271
           W+SIKNLPLD WRR+ F+ +GA
Sbjct: 313 WLSIKNLPLDLWRRAIFEVIGA 260

The following BLAST results are available for this feature:

BLAST of HG10013256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047189.1	6.1e-26	50.93	hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa] >TYK29739...	[more]
KAA0063979.1	2.5e-24	50.00	hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa]	[more]
KAA0054135.1	1.4e-22	62.82	hypothetical protein E6C27_scaffold131G00510 [Cucumis melo var. makuwa]	[more]
TYK30603.1	5.0e-20	27.10	Ulp1-like peptidase [Cucumis melo var. makuwa]	[more]
KAA0038211.1	6.5e-20	27.10	Ulp1-like peptidase [Cucumis melo var. makuwa]	[more]

BLAST of HG10013256 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U128	2.9e-26	50.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEL7	1.2e-24	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UK83	6.8e-23	62.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E3A5	2.4e-20	27.10	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8466...	[more]
A0A5A7T996	3.1e-20	27.10	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]

BLAST of HG10013256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013256.1	HG10013256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0140096	catalytic activity, acting on a protein
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0016773	phosphotransferase activity, alcohol group as acceptor