HG10012460 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10012460
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 21441098 .. 21441465 (+)
RNA-Seq Expression	HG10012460
Synteny	HG10012460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGGTTACCTCTCGTCCTTCCTTTTAAAGCACTTGAAAAGTTATTTCAAACCAACCAATGAATTTTCATCCTACAATTCAAGAAAATTTCTGACTCCATTTTTTTGTTTAATTGGATTTTTTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATCATTTCTCCCTTTAGAAAGGCTTGCACCATCTTCAACCAAAACCCTCGAGATCCTAAAAAGTCTCATTCCGACTCAGAGCAAGAGAAGCGAGTGGACGTGAGGAATCTCCAAGGAGAAGTGATGGCATGTGGGTATGAAGATGTGCACGTGATGTGGTCTATTTTAGACAAGGCCAATTCTACTGCTACCGCCACCGCTGCCACTTGTAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMWSILDKANSTATATAATCNVSS

Homology

[Close]

BLAST of HG10012460 vs. NCBI nr
Match: XP_038898749.1 (uncharacterized protein LOC120086267 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQN RDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNTRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDKANS ATAT  TCNVSS
Sbjct: 61 SILDKANSIATATTITCNVSS 81

[Close]

BLAST of HG10012460 vs. NCBI nr
Match: XP_008439007.1 (PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA0052144.1 uncharacterized protein E6C27_scaffold1589G00140 [Cucumis melo var. makuwa] >TYK30595.1 uncharacterized protein E5676_scaffold60158G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTATATAATCNVSS 82
          SILD KANS AT   ATCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of HG10012460 vs. NCBI nr
Match: XP_022138108.1 (uncharacterized protein LOC111009357 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 3.4e-33
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 117

Query: 61  SILDKANSTATATAATCNVSS 82
           SILDKANS A ATAA CNVSS
Sbjct: 118 SILDKANSGAAATAA-CNVSS 137

[Close]

BLAST of HG10012460 vs. NCBI nr
Match: XP_004147637.1 (uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical protein Csa_010169 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.6e-33
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of HG10012460 vs. NCBI nr
Match: XP_022980000.1 (uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharacterized protein LOC111790878 [Cucurbita pepo subsp. pepo] >KAG6582137.1 hypothetical protein SDJN03_22139, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDKANST TA A  CNVSS
Sbjct: 61 SILDKANSTTTA-ATACNVSS 80

[Close]

BLAST of HG10012460 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTATATAATCNVSS 82
          SILD KANS AT   ATCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of HG10012460 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 77/82 (93.90%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILD-KANSTATATAATCNVSS 82
          SILD KANS AT   ATCNVSS
Sbjct: 61 SILDHKANSAATTATATCNVSS 82

[Close]

BLAST of HG10012460 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1   MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
           MASWKKTIISPFRKACTIFNQ PRDPKKSHSDSEQEKRVDVR+LQGEVMACGYEDVHVMW
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSDSEQEKRVDVRDLQGEVMACGYEDVHVMW 117

Query: 61  SILDKANSTATATAATCNVSS 82
           SILDKANS A ATAA CNVSS
Sbjct: 118 SILDKANSGAAATAA-CNVSS 137

[Close]

BLAST of HG10012460 vs. ExPASy TrEMBL
Match: A0A0A0L5H1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRD-PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60
          MASWKKTIISPFRKACTIFNQNPRD PKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDHPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVM 60

Query: 61 WSILD-KANSTATATAATCNVSS 82
          WSILD KANS AT   ATCNVSS
Sbjct: 61 WSILDHKANSAATTATATCNVSS 83

[Close]

BLAST of HG10012460 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.3e-33
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60
          MASWKKTIISPFRKACTIFNQ+PRDPKKS SDSEQEKRVDVRNLQGEVMACGYEDVHVMW
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSDSEQEKRVDVRNLQGEVMACGYEDVHVMW 60

Query: 61 SILDKANSTATATAATCNVSS 82
          SILDKANST TA A  CNVSS
Sbjct: 61 SILDKANSTTTA-ATACNVSS 80

[Close]

BLAST of HG10012460 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKK-------SHSDSEQEKRVDVRNLQGEVMACGY 60
          MASWKKTI +PF+KA T FNQ  + PKK       + +  E EKR+ V+ LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVHVMWSILDKANST 70
          +DV VMWSILDK+NS+
Sbjct: 61 DDVLVMWSILDKSNSS 75

[Close]

BLAST of HG10012460 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-17
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSDS--EQEKRVDVRNLQGEVMACGYEDVHV 60
          MASWKKTI +PF+KA T FNQ  +  + +++ +  E EKR  V+ LQG+VMACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQTNRHANAKAREEHEKRT-VQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKANST 70
          MWSILDK+NS+
Sbjct: 61 MWSILDKSNSS 70

The following BLAST results are available for this feature:

BLAST of HG10012460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898749.1	4.8e-35	95.06	uncharacterized protein LOC120086267 [Benincasa hispida]	[more]
XP_008439007.1	3.1e-34	93.90	PREDICTED: uncharacterized protein LOC103483930 isoform X3 [Cucumis melo] >KAA00...	[more]
XP_022138108.1	3.4e-33	93.83	uncharacterized protein LOC111009357 [Momordica charantia]	[more]
XP_004147637.1	7.6e-33	92.77	uncharacterized protein LOC101206709 [Cucumis sativus] >KGN57215.1 hypothetical ...	[more]
XP_022980000.1	1.3e-32	92.59	uncharacterized protein LOC111479526 [Cucurbita maxima] >XP_023527753.1 uncharac...	[more]

BLAST of HG10012460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10012460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9W0	1.5e-34	93.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AXS6	1.5e-34	93.90	uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CC51	1.7e-33	93.83	uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0L5H1	3.7e-33	92.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171230 PE=4 SV=1	[more]
A0A6J1IUX8	6.3e-33	92.59	uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526...	[more]

BLAST of HG10012460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17580.1	1.9e-18	60.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G48330.1	4.8e-17	60.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..41
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..72
None	No IPR available	PANTHER	PTHR33181:SF43	SUBFAMILY NOT NAMED	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10012460.1	HG10012460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane