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HG10012177 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTGTCTTAGTAGAATTCTATCTTTGGCGGCTGAAAGTGGATTCATTTGCGGTTATGACATGCCTCAAACATCCATCAACATTGATCATCTCCTTTTTGCTGACGATACTTTGCCTTTCTCCACCAACAATGAAGAGAAGATTGAAAATCTCATCATTTTGGTTAGTCTTTTTGAAGAAGCCTCTTGTCTCAATATTAATAGACAAAAATCAGAATTTTTGGGTATCCATTGTGAGGATTCTTGGGTGGAAAATATTGCTTTGAAGTTTGATTGTAGGGTGGATCAATGGCCGACCACCTACTTGGGGCTCCCTCTTTATGGTAAATCTTCCTCCCTATCTTTTTGGCACCCCGTTTTGGACAAGATTGACAAGAGATTGTGTTAGGATACCTCCTAACAAGAGAACTCAAGAACACAAAGAACAAACAAGAAAACTACAAGATAGAATTATATTGCAATATCAATGAAGAAATTACAATATACTTCAGCACATTCTAGAGGGTTGGGAATCCTCTCCCAAATTTCCAATTAGGAAATCCAACATAAAAGTCTTCACACCCTCCTACCACTCCCACTCCTTCTATTATAGCAATATTCAGTAACTAACTTCCTATCTAGTTACCCTTATACCTCTTACCCCTCATCATACTAATTATCCCAATAATAACTCCATATATCTCTAACTATGTCCCTTACAGACTGCATTCTTGGCAACACAACCATCTCTCCGAAGGAGGTAAACTGACGCTATTGAAAGCTACGTTAGCCAATCAACCCACATACTTTTGATCCCTCTTCAAAGTACCATTTAAAGTGGCCGAGAACATCACAAACTGTTTTAGAAACTTCTTGTGGTCTGGATACAGGGGCAGCAACTTATCCCACTTCTTTAATTGGAAAATTCTTAAGAAACCTTTGGAAGAAGGGGGTTTGGGGATCACTGATAAAAAGAAGCAAAATAGGGCACTCCTTGCAAAGTGGATTTGACGTTTTTCATTCAGAAAAAGAGCGTCCTCTAGAGAATTATGATTAAAGTCAAATTTGGTTCATGTCATTTTGATTTAATGGACTCGGATTTTCACCACACCTTATCTAGAAGTCCATGGAGTCAAATTATGAAACAGAAAGATCTTGTTTATAATAATATTCATTGCACTATTGGAGATGGCTCTACTACTGCATTTTGGCACATTTGGATTGGAGATGGCGCCCTCAAGCTAAAATTTCCCAAGCTTTATCAACTTGCTGATTCTAAAGAGGCATCTGTGGCTGAGCCCTGAGGTATGGACCATTGAGCTCTGTTCTTGGACATTGAATTTCAGAAGGCATTTCAAAGAGGAAGAAATTACAGAATGCGCTGCATTCACTCATTTTATCCCCAATATTGAGCTTACTGGCAGTAGTGACTCATGGACTTGGAAGCTTGACAAAAATTACTTCTCCACTAAACCTTTATACACATTCATTACGCCTAGTGGGCCATCAATTACAGAGGAGTTCTACAAGAAAATTTGGAGATGCCCCTGCCCTAAACGTATTCTTACTGTGGGAAGTCACTAA ATGGATTGTCTTAGTAGAATTCTATCTTTGGCGGCTGAAAGTGGATTCATTTGCGGTTATGACATGCCTCAAACATCCATCAACATTGATCATCTCCTTTTTGCTGACGATACTTTGCCTTTCTCCACCAACAATGAAGAGAAGATTGAAAATCTCATCATTTTGAGGCATCTGTGGCTGAGCCCTGAGGTATGGACCATTGAGCTCTGTTCTTGGACATTGAATTTCAGAAGGCATTTCAAAGAGGAAGAAATTACAGAATGCGCTGCATTCACTCATTTTATCCCCAATATTGAGCTTACTGGCAGTAGTGACTCATGGACTTGGAAGCTTGACAAAAATTACTTCTCCACTAAACCTTTATACACATTCATTACGCCTAGTGGGCCATCAATTACAGAGGAGTTCTACAAGAAAATTTGGAGATGCCCCTGCCCTAAACGTATTCTTACTGTGGGAAGTCACTAA ATGGATTGTCTTAGTAGAATTCTATCTTTGGCGGCTGAAAGTGGATTCATTTGCGGTTATGACATGCCTCAAACATCCATCAACATTGATCATCTCCTTTTTGCTGACGATACTTTGCCTTTCTCCACCAACAATGAAGAGAAGATTGAAAATCTCATCATTTTGAGGCATCTGTGGCTGAGCCCTGAGGTATGGACCATTGAGCTCTGTTCTTGGACATTGAATTTCAGAAGGCATTTCAAAGAGGAAGAAATTACAGAATGCGCTGCATTCACTCATTTTATCCCCAATATTGAGCTTACTGGCAGTAGTGACTCATGGACTTGGAAGCTTGACAAAAATTACTTCTCCACTAAACCTTTATACACATTCATTACGCCTAGTGGGCCATCAATTACAGAGGAGTTCTACAAGAAAATTTGGAGATGCCCCTGCCCTAAACGTATTCTTACTGTGGGAAGTCACTAA MDCLSRILSLAAESGFICGYDMPQTSINIDHLLFADDTLPFSTNNEEKIENLIILRHLWLSPEVWTIELCSWTLNFRRHFKEEEITECAAFTHFIPNIELTGSSDSWTWKLDKNYFSTKPLYTFITPSGPSITEEFYKKIWRCPCPKRILTVGSH Homology
BLAST of HG10012177 vs. NCBI nr
Match: KAA0035255.1 (choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 7.5e-05 Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 0
BLAST of HG10012177 vs. NCBI nr
Match: TYK03140.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 57.8 bits (138), Expect = 9.8e-05 Identity = 47/148 (31.76%), Postives = 65/148 (43.92%), Query Frame = 0
BLAST of HG10012177 vs. ExPASy TrEMBL
Match: A0A5A7T1C2 (Choline-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00180 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05 Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 0
BLAST of HG10012177 vs. ExPASy TrEMBL
Match: A0A5D3BVM7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00150 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05 Identity = 47/148 (31.76%), Postives = 65/148 (43.92%), Query Frame = 0
BLAST of HG10012177 vs. ExPASy TrEMBL
Match: A0A5D3C104 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00250 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 4.0e-04 Identity = 46/146 (31.51%), Postives = 66/146 (45.21%), Query Frame = 0
BLAST of HG10012177 vs. ExPASy TrEMBL
Match: A0A6J1CVL8 (uncharacterized protein LOC111015185 OS=Momordica charantia OX=3673 GN=LOC111015185 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 5.3e-04 Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0
BLAST of HG10012177 vs. ExPASy TrEMBL
Match: A0A2N9HXR7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46579 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04 Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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