HG10011807 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011807
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMuDRA-like transposase
LocationChr01: 12610898 .. 12611236 (+)
RNA-Seq ExpressionHG10011807
SyntenyHG10011807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAAGCCTCTATGCATTCGATATGTTGGTTTATGGGATGACAAGGAACAATGCTATAGTGGAGGTCGTTTGAAGGGTATCTTAGTGTTGAGCACATTGAAGTATAATGAATTGAGAAATTGCATATATGAACTTACAAAAGTTAATTCATTAGAGTTTGATGTTATAGTGAGGGTGAAATATAAGTTGGATTATGAATCTCCTCCAGTATACTTAATAAACGATGATGATGTTAAAATTCTCCTTTTGGCGATGGATCATTCTAGACCTCAGATATTCATAAATGTTGAACACATCCAACAAGAGACAACCTTTAAAAACACAGAGAGATAG

mRNA sequence

ATGGACAAGAAGCCTCTATGCATTCGATATGTTGGTTTATGGGATGACAAGGAACAATGCTATAGTGGAGGTCGTTTGAAGGGTATCTTAGTGTTGAGCACATTGAAGTATAATGAATTGAGAAATTGCATATATGAACTTACAAAAGTTAATTCATTAGAGTTTGATGTTATAGTGAGGGTGAAATATAAGTTGGATTATGAATCTCCTCCAGTATACTTAATAAACGATGATGATGTTAAAATTCTCCTTTTGGCGATGGATCATTCTAGACCTCAGATATTCATAAATGTTGAACACATCCAACAAGAGACAACCTTTAAAAACACAGAGAGATAG

Coding sequence (CDS)

ATGGACAAGAAGCCTCTATGCATTCGATATGTTGGTTTATGGGATGACAAGGAACAATGCTATAGTGGAGGTCGTTTGAAGGGTATCTTAGTGTTGAGCACATTGAAGTATAATGAATTGAGAAATTGCATATATGAACTTACAAAAGTTAATTCATTAGAGTTTGATGTTATAGTGAGGGTGAAATATAAGTTGGATTATGAATCTCCTCCAGTATACTTAATAAACGATGATGATGTTAAAATTCTCCTTTTGGCGATGGATCATTCTAGACCTCAGATATTCATAAATGTTGAACACATCCAACAAGAGACAACCTTTAAAAACACAGAGAGATAG

Protein sequence

MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKYKLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVEHIQQETTFKNTER
Homology
BLAST of HG10011807 vs. NCBI nr
Match: XP_038888098.1 (uncharacterized protein LOC120078004 [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVR 60
           M +K +  RY   WD+ +  Y GG L GI+V  TLKY E +  IY +  VN LEFDV++R
Sbjct: 120 MTEKCVLFRYGSHWDENQNLYVGGELTGIVVPITLKYKEFKAHIYRVANVNCLEFDVVMR 179

Query: 61  VKYKLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVEHIQQE 105
           VKYKLD+E+PP+Y+ NDDDV I L   D SR Q+++ ++    E
Sbjct: 180 VKYKLDFEAPPLYIQNDDDVYIFLCLDDLSRVQLYVTLKSYHDE 223

BLAST of HG10011807 vs. NCBI nr
Match: XP_038891939.1 (uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-15
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 10  YVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKYKLDYES 69
           Y G WD+ E     G+L GILV  +LKY E+++ IY +T V+S EFD+I++VKYKL+YE+
Sbjct: 45  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 104

Query: 70  PPVYLINDDDVKILLLAMDHSRPQIFINVE 100
           PP Y+ NDD ++ LL   D SR Q+ + ++
Sbjct: 105 PPQYIRNDDGIRFLLFREDLSRLQLSVTLK 134

BLAST of HG10011807 vs. NCBI nr
Match: XP_038891938.1 (uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-15
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 10  YVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKYKLDYES 69
           Y G WD+ E     G+L GILV  +LKY E+++ IY +T V+S EFD+I++VKYKL+YE+
Sbjct: 76  YGGDWDENESSCIRGQLAGILVPVSLKYEEIKSHIYGVTNVSSSEFDLILKVKYKLEYEA 135

Query: 70  PPVYLINDDDVKILLLAMDHSRPQIFINVE 100
           PP Y+ NDD ++ LL   D SR Q+ + ++
Sbjct: 136 PPQYIRNDDGIRFLLFREDLSRLQLSVTLK 165

BLAST of HG10011807 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 4  KPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKY 63
          K L IR+ G W+D    Y GG LKGI+V  T+ Y EL+N ++ L KV+   +D+++RV Y
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 KLDYESPPVYLINDDDVKILLLAMDHSRPQIFIN 98
           L  +SPP+++ +DDD++  L+    S+  +F++
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVS 98

BLAST of HG10011807 vs. NCBI nr
Match: XP_038902319.1 (trichohyalin-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 5.4e-13
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 1   MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVR 60
           M +K + I Y G WD+ +  Y GG L GI+V  TLKY EL+  IY +  ++ LEFDV++R
Sbjct: 233 MTRKCVLIGYRGHWDENQNLYVGGELIGIVVPITLKYEELKAHIYRIENISCLEFDVVMR 292

Query: 61  VKYKLDYESPPVYL 75
           VKYKLD+E+PP Y+
Sbjct: 293 VKYKLDFEAPPHYI 306

BLAST of HG10011807 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 0

Query: 4  KPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKY 63
          K L IR+ G W+D    Y GG LKGI+V  T+ Y EL+N ++ L KV+   +D+++RV Y
Sbjct: 5  KSLFIRFGGTWEDNTNSYVGGELKGIIVPLTVTYKELKNRLFRLMKVDQNGYDLVIRVPY 64

Query: 64 KLDYESPPVYLINDDDVKILLLAMDHSRPQIFIN 98
           L  +SPP+++ +DDD++  L+    S+  +F++
Sbjct: 65 HLACDSPPMFVTDDDDLRFALVQEQVSKVPLFVS 98

BLAST of HG10011807 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1   MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVR 60
           M   P+ +RY G+WD++ + Y GG LKGI+V   + + +L+  +Y+L +V+  +FDV++R
Sbjct: 1   MSHIPMLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIR 60

Query: 61  VKY--KLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVE 100
             Y  K+++E+P   L ND D+K  LL+ +  +  ++++ E
Sbjct: 61  CIYEIKVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

BLAST of HG10011807 vs. ExPASy TrEMBL
Match: A0A6N0C346 (MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 35/101 (34.65%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1   MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVR 60
           M   P+ +RY G+WD++ + Y GG LKGI+V   + + +L+  +Y+L +V+  +FDV++R
Sbjct: 1   MSHIPMLVRYGGMWDERRRKYEGGMLKGIVVSKEITHKDLQAELYDLAEVDPSKFDVMIR 60

Query: 61  VKY--KLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVE 100
             Y  K+++E+P   L ND D+K  LL+ +  +  ++++ E
Sbjct: 61  CIYEIKVEHEAPTFELSNDRDLKFYLLSENPLKVPLYVSFE 101

BLAST of HG10011807 vs. ExPASy TrEMBL
Match: A0A5A7UT04 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001610 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 35/101 (34.65%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 1   MDKKPLCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVR 60
           M    + +RY G WD+  + Y GG LKGI+V   + + +L++ +Y LTKV+  +FD+ +R
Sbjct: 1   MSNVRILVRYGGAWDEGRRKYEGGVLKGIVVSKEITHKDLQDELYNLTKVDPTKFDIKIR 60

Query: 61  VKY--KLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVE 100
             Y  K++ E+PP  L ND D+K  +L+ +     ++++ E
Sbjct: 61  CIYEIKVENEAPPFELSNDRDLKFYILSENPLEVPLYVSFE 101

BLAST of HG10011807 vs. ExPASy TrEMBL
Match: A0A5D3CHB1 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G001080 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-09
Identity = 32/96 (33.33%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 6   LCIRYVGLWDDKEQCYSGGRLKGILVLSTLKYNELRNCIYELTKVNSLEFDVIVRVKY-- 65
           + +RY G WD+  + Y GG LKGI+V   + + +L++ +Y+L +V+ +EFD+ +R  Y  
Sbjct: 6   ILVRYGGSWDEGRRKYEGGMLKGIVVNKEITHKDLQDKLYDLVEVDPVEFDIKIRCIYEI 65

Query: 66  KLDYESPPVYLINDDDVKILLLAMDHSRPQIFINVE 100
           K+  E+PP  L N+ D+K  +L+ +     ++++ E
Sbjct: 66  KVKNEAPPFELCNNRDLKFYILSENPLEVPLYVSFE 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888098.11.3e-1948.08uncharacterized protein LOC120078004 [Benincasa hispida][more]
XP_038891939.14.4e-1547.78uncharacterized protein LOC120081277 isoform X2 [Benincasa hispida][more]
XP_038891938.14.4e-1547.78uncharacterized protein LOC120081277 isoform X1 [Benincasa hispida][more]
XP_022154925.14.2e-1339.36uncharacterized protein LOC111022071 [Momordica charantia][more]
XP_038902319.15.4e-1351.35trichohyalin-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL082.0e-1339.36uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A2I7YUI43.2e-1134.65MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6N0C3463.2e-1134.65MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A5A7UT044.6e-1034.65MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3CHB15.1e-0933.33MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011807.1HG10011807.1mRNA