HG10011798 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011798
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTransposon, En/Spm-like protein
LocationChr01: 12346824 .. 12347511 (+)
RNA-Seq ExpressionHG10011798
SyntenyHG10011798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGGTATGTGTTCATTTCTATGAATAAATCTTCTAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGGTGAAAAGGGGGATAGTAGAAAGACTTTTGCTAAGTTATTTAAGTTTAGTTTTAAAAAAAAATAAAATGTTTGTTTTATATCAAACAGTAACTAACTTGTTTTGTCCTTTATTGAAAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA

mRNA sequence

ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA

Coding sequence (CDS)

ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA

Protein sequence

MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK
Homology
BLAST of HG10011798 vs. NCBI nr
Match: TYJ98779.1 (hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q               SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKG+GATR VGLEKYV+ NG   I+I+ EDRKP+          + KE+        K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334

Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
           R       NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH  K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360

BLAST of HG10011798 vs. NCBI nr
Match: KAA0032748.1 (hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q               SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKG+GATR VGLEKYV+ NG   I+I+ EDRKP+          + KE+        K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334

Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
           R       NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH  K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360

BLAST of HG10011798 vs. NCBI nr
Match: TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 9.5e-36
Identity = 87/128 (67.97%), Postives = 104/128 (81.25%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FGP NRSRS+SN+N+ N++N++S GEQEV SI+S +Q               SSS
Sbjct: 1   MSSRNFGPGNRSRSSSNMNEANNSNQNSIGEQEVVSIDSDIQ---------------SSS 60

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKGRGATRGVGLEKYV+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+
Sbjct: 61  TKTKGRGATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECE 113

Query: 121 RWSDVSKE 129
            WSDVSKE
Sbjct: 121 HWSDVSKE 113

BLAST of HG10011798 vs. NCBI nr
Match: KAA0035606.1 (Transposon, En/Spm-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 9.2e-31
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           +SSR+FG  NRSRS+SNVN+ N++N++S GEQEV SI+S +Q               SSS
Sbjct: 631 ISSRNFGSGNRSRSSSNVNEANNSNQNSIGEQEVVSIDSYIQ---------------SSS 690

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKGR ATRGVGLEKYV+ANG I I+I+ EDRKP+ KDSSKLNSQI KE+R +VPL+C+
Sbjct: 691 TKTKGREATRGVGLEKYVQANGPIRIRIDFEDRKPIFKDSSKLNSQIEKEVRVVVPLECE 743

Query: 121 RWSDVSKE 129
            WSDVSKE
Sbjct: 751 HWSDVSKE 743

BLAST of HG10011798 vs. NCBI nr
Match: KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 5.0e-29
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 18  VNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKY 77
           +N+ N++N++S GEQEV SI+S +Q               SSSTKTKGRGATRGVGLEKY
Sbjct: 1   MNEANNSNQNSIGEQEVVSIDSDIQ---------------SSSTKTKGRGATRGVGLEKY 60

Query: 78  VRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKE 129
           V+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+ WSDVSKE
Sbjct: 61  VQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECEHWSDVSKE 96

BLAST of HG10011798 vs. ExPASy TrEMBL
Match: A0A5D3BIG6 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00880 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.2e-37
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q               SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKG+GATR VGLEKYV+ NG   I+I+ EDRKP+          + KE+        K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334

Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
           R       NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH  K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360

BLAST of HG10011798 vs. ExPASy TrEMBL
Match: A0A5A7SQC8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00910 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.2e-37
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q               SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKG+GATR VGLEKYV+ NG   I+I+ EDRKP+          + KE+        K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334

Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
           R       NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH  K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360

BLAST of HG10011798 vs. ExPASy TrEMBL
Match: A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 87/128 (67.97%), Postives = 104/128 (81.25%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           MSSR+FGP NRSRS+SN+N+ N++N++S GEQEV SI+S +Q               SSS
Sbjct: 1   MSSRNFGPGNRSRSSSNMNEANNSNQNSIGEQEVVSIDSDIQ---------------SSS 60

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKGRGATRGVGLEKYV+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+
Sbjct: 61  TKTKGRGATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECE 113

Query: 121 RWSDVSKE 129
            WSDVSKE
Sbjct: 121 HWSDVSKE 113

BLAST of HG10011798 vs. ExPASy TrEMBL
Match: A0A0A0LM17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.1e-33
Identity = 87/161 (54.04%), Postives = 105/161 (65.22%), Query Frame = 0

Query: 18  VNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKY 77
           ++Q+N++N++S GEQEV  ++S +Q                     KG  A     LEKY
Sbjct: 1   MHQSNNSNQNSIGEQEVVFVDSDIQ---------------------KGLRA-----LEKY 60

Query: 78  VRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKENYFILDLDE 137
           V+ANG I IKIEL+DRKP+CKDSSK NSQIG                  KENYFILDLD+
Sbjct: 61  VQANGLIPIKIELKDRKPICKDSSKSNSQIG------------------KENYFILDLDD 117

Query: 138 PVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
           P+VQDYLDHEMSVL+RDF CSLHK+YK+ DSP EARKHCDK
Sbjct: 121 PLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDK 117

BLAST of HG10011798 vs. ExPASy TrEMBL
Match: A0A5A7T089 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002870 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
           +SSR+FG  NRSRS+SNVN+ N++N++S GEQEV SI+S +Q               SSS
Sbjct: 631 ISSRNFGSGNRSRSSSNVNEANNSNQNSIGEQEVVSIDSYIQ---------------SSS 690

Query: 61  TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
           TKTKGR ATRGVGLEKYV+ANG I I+I+ EDRKP+ KDSSKLNSQI KE+R +VPL+C+
Sbjct: 691 TKTKGREATRGVGLEKYVQANGPIRIRIDFEDRKPIFKDSSKLNSQIEKEVRVVVPLECE 743

Query: 121 RWSDVSKE 129
            WSDVSKE
Sbjct: 751 HWSDVSKE 743

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ98779.11.9e-3654.49hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa][more]
KAA0032748.11.9e-3654.49hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa][more]
TYK04806.19.5e-3667.97formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
KAA0035606.19.2e-3163.28Transposon, En/Spm-like protein [Cucumis melo var. makuwa][more]
KAA0046978.15.0e-2965.77formin-like protein 4 isoform X2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BIG69.2e-3754.49DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SQC89.2e-3754.49DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3C2Z54.6e-3667.97Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A0A0LM178.1e-3354.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1[more]
A0A5A7T0894.4e-3163.28Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR33499:SF17OS12G0231700 PROTEINcoord: 19..177
NoneNo IPR availablePANTHERPTHR33499FAMILY NOT NAMEDcoord: 19..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011798.1HG10011798.1mRNA