Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGGTATGTGTTCATTTCTATGAATAAATCTTCTAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGGTGAAAAGGGGGATAGTAGAAAGACTTTTGCTAAGTTATTTAAGTTTAGTTTTAAAAAAAAATAAAATGTTTGTTTTATATCAAACAGTAACTAACTTGTTTTGTCCTTTATTGAAAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA
mRNA sequence
ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA
Coding sequence (CDS)
ATGTCGTCAAGAAGTTTCGGACCAAGAAATCGTAGTAGGTCCAATTCAAATGTTAACCAAACAAATTCAAATAATGAAGATTCTACTGGCGAGCAAGAAGTTGGGTCGATAAATTCAAGTGTTCAAGTTTCCTATAACATTAGATGTATTAATATTGATATTTCTCATGCAAGTTCTAGTACTAAAACTAAAGGCCGAGGAGCGACTAGAGGGGTTGGACTTGAGAAATATGTCCGAGCAAATGGTCGCATTGCTATTAAAATTGAACTCGAAGATAGAAAACCGGTTTGTAAGGACTCGTCCAAATTGAACTCTCAAATTGGAAAAGAGCTACGTGCAATAGTACCTCTTGACTGCAAACGTTGGTCAGATGTCTCCAAAGAGAATTACTTCATTCTAGACTTGGATGAACCTGTGGTACAAGATTATCTTGATCACGAGATGAGTGTACTACACAGAGACTTTCGTTGTTCACTACACAAAACCTATAAACAGTACGACTCTCCAGTTGAAGCACGAAAACACTGCGACAAATGA
Protein sequence
MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK
Homology
BLAST of HG10011798 vs. NCBI nr
Match:
TYJ98779.1 (hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKG+GATR VGLEKYV+ NG I+I+ EDRKP+ + KE+ K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334
Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
R NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360
BLAST of HG10011798 vs. NCBI nr
Match:
KAA0032748.1 (hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKG+GATR VGLEKYV+ NG I+I+ EDRKP+ + KE+ K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334
Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
R NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360
BLAST of HG10011798 vs. NCBI nr
Match:
TYK04806.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 161.0 bits (406), Expect = 9.5e-36
Identity = 87/128 (67.97%), Postives = 104/128 (81.25%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FGP NRSRS+SN+N+ N++N++S GEQEV SI+S +Q SSS
Sbjct: 1 MSSRNFGPGNRSRSSSNMNEANNSNQNSIGEQEVVSIDSDIQ---------------SSS 60
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKGRGATRGVGLEKYV+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+
Sbjct: 61 TKTKGRGATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECE 113
Query: 121 RWSDVSKE 129
WSDVSKE
Sbjct: 121 HWSDVSKE 113
BLAST of HG10011798 vs. NCBI nr
Match:
KAA0035606.1 (Transposon, En/Spm-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 144.4 bits (363), Expect = 9.2e-31
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
+SSR+FG NRSRS+SNVN+ N++N++S GEQEV SI+S +Q SSS
Sbjct: 631 ISSRNFGSGNRSRSSSNVNEANNSNQNSIGEQEVVSIDSYIQ---------------SSS 690
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKGR ATRGVGLEKYV+ANG I I+I+ EDRKP+ KDSSKLNSQI KE+R +VPL+C+
Sbjct: 691 TKTKGREATRGVGLEKYVQANGPIRIRIDFEDRKPIFKDSSKLNSQIEKEVRVVVPLECE 743
Query: 121 RWSDVSKE 129
WSDVSKE
Sbjct: 751 HWSDVSKE 743
BLAST of HG10011798 vs. NCBI nr
Match:
KAA0046978.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 138.7 bits (348), Expect = 5.0e-29
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0
Query: 18 VNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKY 77
+N+ N++N++S GEQEV SI+S +Q SSSTKTKGRGATRGVGLEKY
Sbjct: 1 MNEANNSNQNSIGEQEVVSIDSDIQ---------------SSSTKTKGRGATRGVGLEKY 60
Query: 78 VRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKE 129
V+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+ WSDVSKE
Sbjct: 61 VQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECEHWSDVSKE 96
BLAST of HG10011798 vs. ExPASy TrEMBL
Match:
A0A5D3BIG6 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00880 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 9.2e-37
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKG+GATR VGLEKYV+ NG I+I+ EDRKP+ + KE+ K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334
Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
R NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360
BLAST of HG10011798 vs. ExPASy TrEMBL
Match:
A0A5A7SQC8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00910 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 9.2e-37
Identity = 97/178 (54.49%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FG RNRSRS+SN+N+ +++N++S GEQEV SI+S +Q SSS
Sbjct: 215 MSSRNFGSRNRSRSSSNMNEPSNSNQNSIGEQEVVSIDSDIQ---------------SSS 274
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKG+GATR VGLEKYV+ NG I+I+ EDRKP+ + KE+ K
Sbjct: 275 TKTKGQGATRRVGLEKYVQENGPSRIRIDFEDRKPI---------YVSKEV--------K 334
Query: 121 RWSDVSKENYFILDLDEPVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
R NYFILD++EP+VQDYL+HEMSVL+RDFRCSLHK+YK+YDSP +ARKH K
Sbjct: 335 REIVDGLSNYFILDVNEPLVQDYLEHEMSVLYRDFRCSLHKSYKKYDSPAKARKHRHK 360
BLAST of HG10011798 vs. ExPASy TrEMBL
Match:
A0A5D3C2Z5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001300 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 87/128 (67.97%), Postives = 104/128 (81.25%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
MSSR+FGP NRSRS+SN+N+ N++N++S GEQEV SI+S +Q SSS
Sbjct: 1 MSSRNFGPGNRSRSSSNMNEANNSNQNSIGEQEVVSIDSDIQ---------------SSS 60
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKGRGATRGVGLEKYV+ANG I I+I+ EDRKP+CKDSSKLNSQIGKE+RAIVPL+C+
Sbjct: 61 TKTKGRGATRGVGLEKYVQANGPIRIRIDFEDRKPICKDSSKLNSQIGKEVRAIVPLECE 113
Query: 121 RWSDVSKE 129
WSDVSKE
Sbjct: 121 HWSDVSKE 113
BLAST of HG10011798 vs. ExPASy TrEMBL
Match:
A0A0A0LM17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 8.1e-33
Identity = 87/161 (54.04%), Postives = 105/161 (65.22%), Query Frame = 0
Query: 18 VNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSSTKTKGRGATRGVGLEKY 77
++Q+N++N++S GEQEV ++S +Q KG A LEKY
Sbjct: 1 MHQSNNSNQNSIGEQEVVFVDSDIQ---------------------KGLRA-----LEKY 60
Query: 78 VRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCKRWSDVSKENYFILDLDE 137
V+ANG I IKIEL+DRKP+CKDSSK NSQIG KENYFILDLD+
Sbjct: 61 VQANGLIPIKIELKDRKPICKDSSKSNSQIG------------------KENYFILDLDD 117
Query: 138 PVVQDYLDHEMSVLHRDFRCSLHKTYKQYDSPVEARKHCDK 179
P+VQDYLDHEMSVL+RDF CSLHK+YK+ DSP EARKHCDK
Sbjct: 121 PLVQDYLDHEMSVLYRDFHCSLHKSYKKCDSPTEARKHCDK 117
BLAST of HG10011798 vs. ExPASy TrEMBL
Match:
A0A5A7T089 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002870 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 4.4e-31
Identity = 81/128 (63.28%), Postives = 99/128 (77.34%), Query Frame = 0
Query: 1 MSSRSFGPRNRSRSNSNVNQTNSNNEDSTGEQEVGSINSSVQVSYNIRCINIDISHASSS 60
+SSR+FG NRSRS+SNVN+ N++N++S GEQEV SI+S +Q SSS
Sbjct: 631 ISSRNFGSGNRSRSSSNVNEANNSNQNSIGEQEVVSIDSYIQ---------------SSS 690
Query: 61 TKTKGRGATRGVGLEKYVRANGRIAIKIELEDRKPVCKDSSKLNSQIGKELRAIVPLDCK 120
TKTKGR ATRGVGLEKYV+ANG I I+I+ EDRKP+ KDSSKLNSQI KE+R +VPL+C+
Sbjct: 691 TKTKGREATRGVGLEKYVQANGPIRIRIDFEDRKPIFKDSSKLNSQIEKEVRVVVPLECE 743
Query: 121 RWSDVSKE 129
WSDVSKE
Sbjct: 751 HWSDVSKE 743
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYJ98779.1 | 1.9e-36 | 54.49 | hypothetical protein E5676_scaffold156G00880 [Cucumis melo var. makuwa] | [more] |
KAA0032748.1 | 1.9e-36 | 54.49 | hypothetical protein E6C27_scaffold853G00910 [Cucumis melo var. makuwa] | [more] |
TYK04806.1 | 9.5e-36 | 67.97 | formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] | [more] |
KAA0035606.1 | 9.2e-31 | 63.28 | Transposon, En/Spm-like protein [Cucumis melo var. makuwa] | [more] |
KAA0046978.1 | 5.0e-29 | 65.77 | formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BIG6 | 9.2e-37 | 54.49 | DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7SQC8 | 9.2e-37 | 54.49 | DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3C2Z5 | 4.6e-36 | 67.97 | Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A0A0LM17 | 8.1e-33 | 54.04 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G294860 PE=4 SV=1 | [more] |
A0A5A7T089 | 4.4e-31 | 63.28 | Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
Match Name | E-value | Identity | Description | |