HG10011679 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011679
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type domain-containing protein
Location	Chr01: 9236956 .. 9237372 (-)
RNA-Seq Expression	HG10011679
Synteny	HG10011679

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATAATCGTCGTCTTTGGCTTTTTCTTGACAATTTTTGTGTTCATCTCCTTCTTTGGCTTGTGTCTATACATCTGTTTCCAATGCTACAACCAGGGATTCCCAGAGGGCGAGCAACGCGGCAGTGGGAATGTAGAAACGACGACAACAACGACAACGGCGGATCTTGAGGAGCGGAATCGTCAGACTCAAATGGCAATGGAGAAATTGACGAAGCCATCGGCAGAGTATGATTTCGAGGAGAATGATGAATCTCCATCGTCATTGAGTGAATGCGCGATATGTTTGGAGGAGTTTGGAGAAAGGGTTTCGTGTCGAGTTTTTCCTAATTGCAAGCATATGTTCCATACACATTGCATTATCAATTGGTTAGAAATTAATCAAACTTGTCCAATATGTCGGACACAGCTGTAG

mRNA sequence

ATGCACATAATCGTCGTCTTTGGCTTTTTCTTGACAATTTTTGTGTTCATCTCCTTCTTTGGCTTGTGTCTATACATCTGTTTCCAATGCTACAACCAGGGATTCCCAGAGGGCGAGCAACGCGGCAGTGGGAATGTAGAAACGACGACAACAACGACAACGGCGGATCTTGAGGAGCGGAATCGTCAGACTCAAATGGCAATGGAGAAATTGACGAAGCCATCGGCAGAGTATGATTTCGAGGAGAATGATGAATCTCCATCGTCATTGAGTGAATGCGCGATATGTTTGGAGGAGTTTGGAGAAAGGGTTTCGTGTCGAGTTTTTCCTAATTGCAAGCATATGTTCCATACACATTGCATTATCAATTGGTTAGAAATTAATCAAACTTGTCCAATATGTCGGACACAGCTGTAG

Coding sequence (CDS)

ATGCACATAATCGTCGTCTTTGGCTTTTTCTTGACAATTTTTGTGTTCATCTCCTTCTTTGGCTTGTGTCTATACATCTGTTTCCAATGCTACAACCAGGGATTCCCAGAGGGCGAGCAACGCGGCAGTGGGAATGTAGAAACGACGACAACAACGACAACGGCGGATCTTGAGGAGCGGAATCGTCAGACTCAAATGGCAATGGAGAAATTGACGAAGCCATCGGCAGAGTATGATTTCGAGGAGAATGATGAATCTCCATCGTCATTGAGTGAATGCGCGATATGTTTGGAGGAGTTTGGAGAAAGGGTTTCGTGTCGAGTTTTTCCTAATTGCAAGCATATGTTCCATACACATTGCATTATCAATTGGTTAGAAATTAATCAAACTTGTCCAATATGTCGGACACAGCTGTAG

Protein sequence

MHIIVVFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNVETTTTTTTADLEERNRQTQMAMEKLTKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL

Homology

[Close]

BLAST of HG10011679 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-44
Identity = 94/143 (65.73%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   MHIIVVFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQRGSGNVETTTTTTTA----- 60
           MHIIV+FG FL I V ++FF LCLYICFQCYN GFPE +   + + E+TTTTT A     
Sbjct: 1   MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV 60

Query: 61  DLEERNRQTQMAMEKLTKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHM 120
           D  E NR  Q+AMEKLTKPS EYD+E+++E+ S LS+CAICLEEF     CRVFPNCKHM
Sbjct: 61  DSNEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM 120

Query: 121 FHTHCIINWLEINQTCPICRTQL 139
           FHTHCI+ WL INQTCP+CRTQL
Sbjct: 121 FHTHCIVRWLGINQTCPVCRTQL 143

[Close]

BLAST of HG10011679 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 9.9e-41
Identity = 89/116 (76.72%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 30  CYN-QGFPEGEQRGSGNVETTTTTTT------ADLEERNRQTQMAMEKLTKPSAEYDFEE 89
           C N  GF E EQRG+ N E T TTTT      AD EERNRQ QMAMEKLTKPSA Y+ EE
Sbjct: 153 CQNFPGFSESEQRGNRNEEMTMTTTTVATTMVADPEERNRQLQMAMEKLTKPSAYYNCEE 212

Query: 90  NDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           NDESPS+LSEC ICLE+ GERVSCRVFPNCKH+FHTHCIINWLEINQTCPICRT+L
Sbjct: 213 NDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPICRTKL 268

[Close]

BLAST of HG10011679 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-36
Identity = 87/145 (60.00%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MHIIVVFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQ--RGSGN---VETTTTTTTA 60
           M IIV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q  R +G+       T   T 
Sbjct: 162 MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAATV 221

Query: 61  DLEERNRQTQMAMEKLTKPSAEYDFEEND--ESPSSLSECAICLEEFGERVSCRVFPNCK 120
           + EE N QT   MEKLT P  +Y  +END   + S L+ECAICLE FG RVSCRVFPNCK
Sbjct: 222 NPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCK 281

Query: 121 HMFHTHCIINWLEINQTCPICRTQL 139
           HMFHTHCII WL IN TCPICRT L
Sbjct: 282 HMFHTHCIIKWLGINLTCPICRTHL 306

[Close]

BLAST of HG10011679 vs. NCBI nr
Match: KAG6600728.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-36
Identity = 87/145 (60.00%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MHIIVVFGFFLTIFVFISFFGLCLYICFQCYNQGFPEGEQ--RGSGN---VETTTTTTTA 60
           M IIV+FGF LT+ V  SFF LC+YICFQC+ QGF    Q  R +G+       T   T 
Sbjct: 1   MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAATV 60

Query: 61  DLEERNRQTQMAMEKLTKPSAEYDFEEND--ESPSSLSECAICLEEFGERVSCRVFPNCK 120
           + EE N QT   MEKLT P  +Y  +END   + S L+ECAICLE FG RVSCRVFPNCK
Sbjct: 61  NPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCK 120

Query: 121 HMFHTHCIINWLEINQTCPICRTQL 139
           HMFHTHCII WL IN TCPICRT L
Sbjct: 121 HMFHTHCIIKWLGINLTCPICRTHL 145

[Close]

BLAST of HG10011679 vs. NCBI nr
Match: XP_023545744.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-24
Identity = 60/91 (65.93%), Postives = 65/91 (71.43%), Query Frame = 0


Query: 50  TTTTTADLEERNRQTQMAMEKLTKPSAEYDFEEND--ESPSSLSECAICLEEFGERVSCR 109
           T   T + EE N Q   AMEKLT P  +Y  +END   + S L+ECAICLE FG RVSCR
Sbjct: 72  TRVATVNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICLEAFGNRVSCR 131

Query: 110 VFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           VFPNCKHMFHTHCII WL IN TCPICRT L
Sbjct: 132 VFPNCKHMFHTHCIIKWLGINLTCPICRTHL 162

[Close]

BLAST of HG10011679 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-11
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 92  ECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           EC++CL EF +  S RV PNCKH FH HCI  W   + +CP+CR+Q+
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQI 121

[Close]

BLAST of HG10011679 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-10
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 81  EENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           E  +E      EC++CL EF +    R+ PNC H+FH  CI  WL+ N  CP+CRT++
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of HG10011679 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-10
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 72  TKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTC 131
           T P+  Y   +  +      ECAICL EF +  + R+ P C H+FH HCI  WL+ + TC
Sbjct: 103 TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTC 162

Query: 132 PICRTQL 139
           P+CRT L
Sbjct: 163 PVCRTNL 169

[Close]

BLAST of HG10011679 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 80  FEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRT 137
           F  +DE+     ECA+CL EF E  + RV PNC+H FH  CI  W   + TCP+CR+
Sbjct: 106 FTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of HG10011679 vs. ExPASy Swiss-Prot
Match: Q9SLC4 (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 91  SECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQ 138
           +ECA+CL    E+ + R+ PNCKH+FH  C+  WL    TCP+CRT+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144

[Close]

BLAST of HG10011679 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.4e-31
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 59  ERNRQTQMAMEKLTKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHT 118
           ERNRQ QMAMEKLTKPSA Y+ EENDESPS+LSEC ICLE+ GERVSCRVFPNCKH+FHT
Sbjct: 7   ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHT 66

Query: 119 HCIINWLEINQTCPI 134
           HCIINWLEINQTCPI
Sbjct: 67  HCIINWLEINQTCPI 81

[Close]

BLAST of HG10011679 vs. ExPASy TrEMBL
Match: V4URL5 (RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10010737mg PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 58  EERNRQTQMAMEKLTKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFH 117
           EER RQ +  + K+T+    Y  +E   S SS S CAICLE F +  +CR+F  C H+FH
Sbjct: 73  EERQRQREQTLNKMTR-LVNYKRQETTTSSSS-SGCAICLETFADDETCRIFLVCNHIFH 132

Query: 118 THCIINWLEINQTCPICR 136
            +CI  WLEIN TCP+CR
Sbjct: 133 LNCIDGWLEINLTCPLCR 148

[Close]

BLAST of HG10011679 vs. ExPASy TrEMBL
Match: A0A1S2XDR3 (putative RING-H2 finger protein ATL19 OS=Cicer arietinum OX=3827 GN=LOC101507751 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.0e-11
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 52  TTTADLEERNRQTQMAMEKLTKPSAEYDFEEN-DESPSSLSECAICLEEFGERVSCRVFP 111
           T  A ++E+  Q   A +KL  P   Y    N DE   S +ECAICLE+F ER  C+VFP
Sbjct: 103 TMVASIDEKRGQKLRASKKL-PPLMSYGVGRNDDELRRSCNECAICLEDFQERQLCQVFP 162

Query: 112 NCKHMFHTHCIINWLEINQTCPICR 136
            CKH+FH+ C  +WL+   TCPICR
Sbjct: 163 VCKHIFHSDCSDHWLQKKSTCPICR 186

[Close]

BLAST of HG10011679 vs. ExPASy TrEMBL
Match: A0A7N2M906 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 0


Query: 21  GLCLYICFQCYNQGFPEGEQRGSGNVETTTTTTTADLEERNRQTQMAMEKLTKPSAEYDF 80
           GL +Y  F+C +Q F   E+                 ++  +Q + A+++L+ P + Y  
Sbjct: 44  GLVIYCIFECVSQMFSNSEES----------------DQAEKQMKRALKRLS-PISGYK- 103

Query: 81  EENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRT 137
            +  E+ S    C ICLEEF     C+ FP CKH+FH+HCI +WL+   TCPICRT
Sbjct: 104 SDQQETASWNEYCVICLEEFEPGDPCQCFPFCKHIFHSHCIRHWLKFQLTCPICRT 141

[Close]

BLAST of HG10011679 vs. ExPASy TrEMBL
Match: A0A067F8J1 (RING-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g045184mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.2e-11
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 58  EERNRQTQMAMEKLTKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFH 117
           EER RQ +  + K+T     Y  +E   S SS S CAICLE F +  +CR+F  C H+FH
Sbjct: 10  EERQRQREQTLNKMTH-LVNYKRQETTTSSSS-SGCAICLETFADDETCRIFLVCNHIFH 69

Query: 118 THCIINWLEINQTCPICR 136
            +CI  WLEIN TCP+CR
Sbjct: 70  LNCIDGWLEINLTCPLCR 85

[Close]

BLAST of HG10011679 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 25/58 (43.10%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 81  EENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           E  +E      EC++CL EF +    R+ PNC H+FH  CI  WL+ N  CP+CRT++
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of HG10011679 vs. TAIR 10
Match: AT5G27420.1 (carbon/nitrogen insensitive 1 )

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-11
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 72  TKPSAEYDFEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTC 131
           T P+  Y   +  +      ECAICL EF +  + R+ P C H+FH HCI  WL+ + TC
Sbjct: 103 TFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTC 162

Query: 132 PICRTQL 139
           P+CRT L
Sbjct: 163 PVCRTNL 169

[Close]

BLAST of HG10011679 vs. TAIR 10
Match: AT2G42350.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 91  SECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQ 138
           +ECA+CL    E+ + R+ PNCKH+FH  C+  WL    TCP+CRT+
Sbjct: 98  TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTE 144

[Close]

BLAST of HG10011679 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 80  FEENDESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRT 137
           F  +DE+     ECA+CL EF E  + RV PNC+H FH  CI  W   + TCP+CR+
Sbjct: 106 FTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162

[Close]

BLAST of HG10011679 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-11
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 84  DESPSSLSECAICLEEFGERVSCRVFPNCKHMFHTHCIINWLEINQTCPICRTQL 139
           D   +S +ECA+CL    E+   R  PNCKH+FH  C+  WL    TCP+CRT++
Sbjct: 99  DGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153

The following BLAST results are available for this feature:

BLAST of HG10011679 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577374.1	3.3e-44	65.73	RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011652743.1	9.9e-41	76.72	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]
KAG7031368.1	5.6e-36	60.00	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6600728.1	5.6e-36	60.00	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023545744.1	4.9e-24	65.93	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10011679 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF65	5.0e-11	53.19	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
Q9LSW9	1.9e-10	43.10	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8LGA5	3.2e-10	43.28	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
Q8L9T5	4.2e-10	47.37	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9SLC4	4.2e-10	48.94	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1	[more]

BLAST of HG10011679 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Y8	3.4e-31	88.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P...	[more]
V4URL5	2.3e-11	50.00	RING-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v1001...	[more]
A0A1S2XDR3	3.0e-11	48.24	putative RING-H2 finger protein ATL19 OS=Cicer arietinum OX=3827 GN=LOC101507751...	[more]
A0A7N2M906	4.0e-11	36.21	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A067F8J1	5.2e-11	50.00	RING-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CIS...	[more]

BLAST of HG10011679 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	1.3e-11	43.10	RING/U-box superfamily protein	[more]
AT5G27420.1	2.3e-11	43.28	carbon/nitrogen insensitive 1	[more]
AT2G42350.1	3.0e-11	48.94	RING/U-box superfamily protein	[more]
AT3G16720.1	3.0e-11	47.37	TOXICOS EN LEVADURA 2	[more]
AT2G42360.1	6.7e-11	45.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 93..134 e-value: 2.0E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 92..135 e-value: 5.7E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 93..135 score: 12.828597
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 49..138 e-value: 2.9E-20 score: 73.7
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 7..137
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 7..137
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011679.1	HG10011679.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane