HG10011512 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011512
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr01: 6740495 .. 6740848 (-)
RNA-Seq Expression	HG10011512
Synteny	HG10011512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAGATGTTGGGTAGCCATATCTTTGGTATCTTCACTTGTAGAAGCAATATTATTAGGTCCATGCCAAATCCATTATTATACCAAGTCATTGCTTCTAGCTGCCCATCTCTTTTTCCTCGGCGTTATGGCAAACCAAGTAAAGAGGAGGAGGGCGGCGGCGAGAAATCTAAGGCTGACCGAGCTCCGTCGACTGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGGAGGCGGAGGAGAAGGAGGTGCATGATCAGGGCGTCGCCAAAAAATCTGAAGCCATAGAAAAAAATAATGGCCCTAATGACGACATAAATAAAGGGCCTAATTACCGGCCTTGTAGCTGA

mRNA sequence

ATGAAGATGAAGATGTTGGGTAGCCATATCTTTGGTATCTTCACTTGTAGAAGCAATATTATTAGGTCCATGCCAAATCCATTATTATACCAAGTCATTGCTTCTAGCTGCCCATCTCTTTTTCCTCGGCGTTATGGCAAACCAAGTAAAGAGGAGGAGGGCGGCGGCGAGAAATCTAAGGCTGACCGAGCTCCGTCGACTGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGGAGGCGGAGGAGAAGGAGGTGCATGATCAGGGCGTCGCCAAAAAATCTGAAGCCATAGAAAAAAATAATGGCCCTAATGACGACATAAATAAAGGGCCTAATTACCGGCCTTGTAGCTGA

Coding sequence (CDS)

ATGAAGATGAAGATGTTGGGTAGCCATATCTTTGGTATCTTCACTTGTAGAAGCAATATTATTAGGTCCATGCCAAATCCATTATTATACCAAGTCATTGCTTCTAGCTGCCCATCTCTTTTTCCTCGGCGTTATGGCAAACCAAGTAAAGAGGAGGAGGGCGGCGGCGAGAAATCTAAGGCTGACCGAGCTCCGTCGACTGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGGAGGCGGAGGAGAAGGAGGTGCATGATCAGGGCGTCGCCAAAAAATCTGAAGCCATAGAAAAAAATAATGGCCCTAATGACGACATAAATAAAGGGCCTAATTACCGGCCTTGTAGCTGA

Protein sequence

MKMKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIASSCPSLFPRRYGKPSKEEEGGGEKSKADRAPSTAEEFNRVAAEKEAEEKEVHDQGVAKKSEAIEKNNGPNDDINKGPNYRPCS

Homology

[Close]

BLAST of HG10011512 vs. NCBI nr
Match: KGN56105.1 (hypothetical protein Csa_009481 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.0e-17
Identity = 70/138 (50.72%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 1   MKMKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIASSC-----------PSLFPRRYGKPS 60
           +KMK +G  IF    CRSN   +M     +Q++AS             PSLFPRRYGKPS
Sbjct: 44  IKMKKIG--IFPT-ACRSNNNTNMGMTNPFQLVASYSYSSMSMADYFPPSLFPRRYGKPS 103

Query: 61  KE--EEGGGEKSKADRAPSTAEEFNRVAAEKEAEEKE------VHDQG-VAKKSE-AIEK 118
           K+  E  GGE+SKA+RAPSTAEEFNR+A EK++++ +      VH +   AK+SE A+EK
Sbjct: 104 KDEAEHSGGERSKAERAPSTAEEFNRMATEKQSKDHQEEEVDAVHGRDKFAKESEAAMEK 163

[Close]

BLAST of HG10011512 vs. NCBI nr
Match: XP_016900655.1 (PREDICTED: uncharacterized protein LOC107990980 isoform X1 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-17
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MKMKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIAS----SCP-----SLFPRR-YGKPSK 60
           +KMK +G     I T RSN   +M NPL   VIAS    S P     SLFPRR YGKP  
Sbjct: 25  VKMKKIG---IPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFPRRCYGKPIS 84

Query: 61  EEE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGVAKKSEAIEKNNGP 118
           ++E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V K+S  + K++ P
Sbjct: 85  KDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKESGEMGKSSDP 144

[Close]

BLAST of HG10011512 vs. NCBI nr
Match: KAA0055854.1 (uncharacterized protein E6C27_scaffold104G00300 [Cucumis melo var. makuwa] >TYK24078.1 uncharacterized protein E5676_scaffold943G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-17
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 3   MKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIAS----SCP-----SLFPRR--YGKPSKE 62
           MK +G     I T RSN   +M NPL   VIAS    S P     SLFPRR  YGKP  +
Sbjct: 1   MKKIG---IPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFPRRSCYGKPISK 60

Query: 63  EE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGVAKKSEAIEKNNGPN 118
           +E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V K+S  +EK++ PN
Sbjct: 61  DEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKESGEMEKSSDPN 120

[Close]

BLAST of HG10011512 vs. NCBI nr
Match: XP_016900656.1 (PREDICTED: uncharacterized protein LOC107990980 isoform X2 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-13
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 39  SLFPRR-YGKPSKEEE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGV 98
           SLFPRR YGKP  ++E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V
Sbjct: 40  SLFPRRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-V 99

Query: 99  AKKSEAIEKNNGPNDDINKGPNYRPCS 118
            K+S  + K++ PN+ INKGPNYRPCS
Sbjct: 100 TKESGEMGKSSDPNNHINKGPNYRPCS 125

[Close]

BLAST of HG10011512 vs. NCBI nr
Match: KAG6596946.1 (hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-06
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 3   MKMLGSHIFGIFTCRSNIIRSMPNPLL-YQVIASSCPSLFPRRYGKPSKE--------EE 62
           M M+GS      TCR     +  +PLL    +    PSL  RRY KP  +        E+
Sbjct: 1   MTMIGSR-----TCRIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEK 60

Query: 63  GGGEKSKADRAPSTAEEFNRVAAEKEAEEKEVHDQGVAKKSEAIEKNNGPNDDINKGPNY 118
           G   +S  DRAPS AEEFNR+A EK    KE   +   K+SE  +K    + +++ GPNY
Sbjct: 61  GTDHRSNTDRAPSMAEEFNRIADEKHL--KEAPGRSSDKQSETSQK-TASDQNLDDGPNY 116

[Close]

BLAST of HG10011512 vs. ExPASy TrEMBL
Match: A0A0A0L2C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 70/138 (50.72%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 1   MKMKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIASSC-----------PSLFPRRYGKPS 60
           +KMK +G  IF    CRSN   +M     +Q++AS             PSLFPRRYGKPS
Sbjct: 44  IKMKKIG--IFPT-ACRSNNNTNMGMTNPFQLVASYSYSSMSMADYFPPSLFPRRYGKPS 103

Query: 61  KE--EEGGGEKSKADRAPSTAEEFNRVAAEKEAEEKE------VHDQG-VAKKSE-AIEK 118
           K+  E  GGE+SKA+RAPSTAEEFNR+A EK++++ +      VH +   AK+SE A+EK
Sbjct: 104 KDEAEHSGGERSKAERAPSTAEEFNRMATEKQSKDHQEEEVDAVHGRDKFAKESEAAMEK 163

[Close]

BLAST of HG10011512 vs. ExPASy TrEMBL
Match: A0A5A7UKZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00480 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 72/133 (54.14%), Postives = 87/133 (65.41%), Query Frame = 0


Query: 3   MKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIAS----SCP-----SLFPRR--YGKPSKE 62
           MK +G     I T RSN   +M NPL   VIAS    S P     SLFPRR  YGKP  +
Sbjct: 1   MKKIG---IPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFPRRSCYGKPISK 60

Query: 63  EE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGVAKKSEAIEKNNGPN 118
           +E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V K+S  +EK++ PN
Sbjct: 61  DEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKESGEMEKSSDPN 120

[Close]

BLAST of HG10011512 vs. ExPASy TrEMBL
Match: A0A1S4DY64 (uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990980 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MKMKMLGSHIFGIFTCRSNIIRSMPNPLLYQVIAS----SCP-----SLFPRR-YGKPSK 60
           +KMK +G     I T RSN   +M NPL   VIAS    S P     SLFPRR YGKP  
Sbjct: 25  VKMKKIG---IPIPTRRSNTNMAMSNPLFQVVIASYSSMSMPDYFPASLFPRRCYGKPIS 84

Query: 61  EEE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGVAKKSEAIEKNNGP 118
           ++E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V K+S  + K++ P
Sbjct: 85  KDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-VTKESGEMGKSSDP 144

[Close]

BLAST of HG10011512 vs. ExPASy TrEMBL
Match: A0A1S4DXE7 (uncharacterized protein LOC107990980 isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990980 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 39  SLFPRR-YGKPSKEEE---GGGEKSKADRAPSTAEEFNRVAAEKEA----EEKEVHDQGV 98
           SLFPRR YGKP  ++E    GGE+SKA+RAPSTAEEFNR+A EKE+    EE + HD+ V
Sbjct: 40  SLFPRRCYGKPISKDEAERSGGERSKAERAPSTAEEFNRMATEKESKDQEEEVDEHDK-V 99

Query: 99  AKKSEAIEKNNGPNDDINKGPNYRPCS 118
            K+S  + K++ PN+ INKGPNYRPCS
Sbjct: 100 TKESGEMGKSSDPNNHINKGPNYRPCS 125

The following BLAST results are available for this feature:

BLAST of HG10011512 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56105.1	5.0e-17	50.72	hypothetical protein Csa_009481 [Cucumis sativus]	[more]
XP_016900655.1	8.5e-17	53.73	PREDICTED: uncharacterized protein LOC107990980 isoform X1 [Cucumis melo]	[more]
KAA0055854.1	8.5e-17	54.14	uncharacterized protein E6C27_scaffold104G00300 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_016900656.1	5.7e-13	60.92	PREDICTED: uncharacterized protein LOC107990980 isoform X2 [Cucumis melo]	[more]
KAG6596946.1	6.7e-06	39.52	hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10011512 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10011512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C8	2.4e-17	50.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1	[more]
A0A5A7UKZ4	4.1e-17	54.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DY64	4.1e-17	53.73	uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DXE7	2.7e-13	60.92	uncharacterized protein LOC107990980 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of HG10011512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011512.1	HG10011512.1	mRNA