HG10011483 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10011483
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionHAD superfamily, subfamily IIIB acid phosphatase
LocationChr01: 6459005 .. 6459247 (+)
RNA-Seq ExpressionHG10011483
SyntenyHG10011483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGA

mRNA sequence

ATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGA

Coding sequence (CDS)

ATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGA

Protein sequence

MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINHQKLRKHTKLDSDIFWKFVVM
Homology
BLAST of HG10011483 vs. NCBI nr
Match: XP_038891290.1 (uncharacterized protein At2g39920 isoform X3 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-22
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD M+I++++YFSQQQA LQNE FRVVGVMSSHMDALSAPS+GTRIYKLP  MYLNINH
Sbjct: 177 MDDGMKIDHREYFSQQQAVLQNEGFRVVGVMSSHMDALSAPSVGTRIYKLPNPMYLNINH 236

Query: 61  QKLRKHTK 69
           QKL KHTK
Sbjct: 237 QKLSKHTK 244

BLAST of HG10011483 vs. NCBI nr
Match: XP_038891286.1 (uncharacterized protein At2g39920 isoform X1 [Benincasa hispida] >XP_038891287.1 uncharacterized protein At2g39920 isoform X1 [Benincasa hispida] >XP_038891288.1 uncharacterized protein At2g39920 isoform X1 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-22
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD M+I++++YFSQQQA LQNE FRVVGVMSSHMDALSAPS+GTRIYKLP  MYLNINH
Sbjct: 237 MDDGMKIDHREYFSQQQAVLQNEGFRVVGVMSSHMDALSAPSVGTRIYKLPNPMYLNINH 296

Query: 61  QKLRKHTK 69
           QKL KHTK
Sbjct: 297 QKLSKHTK 304

BLAST of HG10011483 vs. NCBI nr
Match: XP_038891289.1 (uncharacterized protein At2g39920 isoform X2 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 7.8e-22
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD M+I++++YFSQQQA LQNE FRVVGVMSSHMDALSAPS+GTRIYKLP  MYLNINH
Sbjct: 236 MDDGMKIDHREYFSQQQAVLQNEGFRVVGVMSSHMDALSAPSVGTRIYKLPNPMYLNINH 295

Query: 61  QKLRKHTK 69
           QKL KHTK
Sbjct: 296 QKLSKHTK 303

BLAST of HG10011483 vs. NCBI nr
Match: XP_023538463.1 (uncharacterized protein At2g39920 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-18
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++++YFSQQQAAL+NE FR+VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 236 MDDKMQISHREYFSQQQAALRNEGFRIVGVMSSYMDALSVPSVGTRIYKLPNPISFNINH 295

Query: 61  QKLRKH 67
           QKL KH
Sbjct: 296 QKLSKH 301

BLAST of HG10011483 vs. NCBI nr
Match: XP_023538446.1 (uncharacterized protein At2g39920 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538455.1 uncharacterized protein At2g39920 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-18
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++++YFSQQQAAL+NE FR+VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 237 MDDKMQISHREYFSQQQAALRNEGFRIVGVMSSYMDALSVPSVGTRIYKLPNPISFNINH 296

Query: 61  QKLRKH 67
           QKL KH
Sbjct: 297 QKLSKH 302

BLAST of HG10011483 vs. ExPASy TrEMBL
Match: A0A6J1ISF3 (uncharacterized protein At2g39920 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478272 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.6e-18
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++++YFSQQQAAL+ E FR+VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 237 MDDKMQISHREYFSQQQAALRKEGFRIVGVMSSYMDALSVPSVGTRIYKLPNPICFNINH 296

Query: 61  QKLRKH 67
           QKL KH
Sbjct: 297 QKLSKH 302

BLAST of HG10011483 vs. ExPASy TrEMBL
Match: A0A6J1IKM3 (uncharacterized protein At2g39920 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478272 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.6e-18
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++++YFSQQQAAL+ E FR+VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 236 MDDKMQISHREYFSQQQAALRKEGFRIVGVMSSYMDALSVPSVGTRIYKLPNPICFNINH 295

Query: 61  QKLRKH 67
           QKL KH
Sbjct: 296 QKLSKH 301

BLAST of HG10011483 vs. ExPASy TrEMBL
Match: A0A6J1GZB6 (uncharacterized protein At2g39920 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458511 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.2e-17
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++ +YFSQQQAAL+NE F +VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 237 MDDKMQISHGEYFSQQQAALRNEGFHIVGVMSSYMDALSVPSVGTRIYKLPNPICFNINH 296

Query: 61  QKLRKH 67
           Q L KH
Sbjct: 297 QNLSKH 302

BLAST of HG10011483 vs. ExPASy TrEMBL
Match: A0A6J1GY16 (uncharacterized protein At2g39920 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458511 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.2e-17
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDD+MQI++ +YFSQQQAAL+NE F +VGVMSS+MDALS PS+GTRIYKLP  +  NINH
Sbjct: 236 MDDKMQISHGEYFSQQQAALRNEGFHIVGVMSSYMDALSVPSVGTRIYKLPNPICFNINH 295

Query: 61  QKLRKH 67
           Q L KH
Sbjct: 296 QNLSKH 301

BLAST of HG10011483 vs. ExPASy TrEMBL
Match: A0A6J1DWF6 (uncharacterized protein At2g39920 OS=Momordica charantia OX=3673 GN=LOC111023752 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 1   MDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINH 60
           MDDE+QI++ +YF++QQAAL  E FR+VGVMSSHMDALS P IGTRIYKLP  ++ NIN+
Sbjct: 236 MDDEVQIDHHEYFTKQQAALLYEGFRIVGVMSSHMDALSGPPIGTRIYKLPNPIHFNINY 295

Query: 61  QKLRKHTKL 70
           Q +RK T++
Sbjct: 296 QNMRKQTQI 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891290.17.8e-2282.35uncharacterized protein At2g39920 isoform X3 [Benincasa hispida][more]
XP_038891286.17.8e-2282.35uncharacterized protein At2g39920 isoform X1 [Benincasa hispida] >XP_038891287.1... [more]
XP_038891289.17.8e-2282.35uncharacterized protein At2g39920 isoform X2 [Benincasa hispida][more]
XP_023538463.14.0e-1874.24uncharacterized protein At2g39920 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023538446.14.0e-1874.24uncharacterized protein At2g39920 isoform X1 [Cucurbita pepo subsp. pepo] >XP_02... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ISF39.6e-1872.73uncharacterized protein At2g39920 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1IKM39.6e-1872.73uncharacterized protein At2g39920 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1GZB66.2e-1771.21uncharacterized protein At2g39920 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1GY166.2e-1771.21uncharacterized protein At2g39920 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1DWF64.0e-1665.22uncharacterized protein At2g39920 OS=Momordica charantia OX=3673 GN=LOC111023752... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31284ACID PHOSPHATASE-LIKE PROTEINcoord: 1..59
NoneNo IPR availablePANTHERPTHR31284:SF22ACID PHOSPHATASE-LIKE PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10011483.1HG10011483.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane