HG10011273 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10011273
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	HMG-Y-related protein A-like
Location	Chr01: 4280971 .. 4282488 (+)
RNA-Seq Expression	HG10011273
Synteny	HG10011273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCCTTTCCTCTTTATCTCTTCCAATTTCAGATACCCATCTTGGAAAAATGATGATATGTCCTGTTTTTTTCTCTTAATTTTTTTTTCTTGGGTTTGGACCCACTACCTTTAATTTGTTGAATCTACTCTGGGTTTGTGTGTTTATGTGTTAATTTGTTCTTCAATTAGGGTTCCTTGTGATTTGTTTCTGATTTTGTATCTTGTTTAGTGAATTTCGTTTTTTGTTGTTTGATTTTTTATTGTTCTGTGGTGATTTGGTGAACAGGGGAAAAAAAATCCTTCTTTCCTTGTGTTTTCTTTCATTTCTATCTCGAATCTGAGTGTTTCTTTTTCGAAAAAATTTCGAAGGGTTTTTTTTTTCTTTCTTCAATGTCACTAAATTTTGATTGATTCAGCTGAGATTTCTCATTTCTTTAGTTCTTGTTAGAATCTTACTTGTTAGATGCAATTTTTTAAGACAGATAAATGAGCTTCTGATTTATTTCTGCTTCCTCTATTATTTGTTTATATTCTTATTTTCAATTATACTTCACTTCCATCATTCTTTAGGAAGTGGTTTTGAGTTTTGAATTTTGTTTGAATGAGAAGAGAATACTTTTTCTTTTTTCATTTTTTTGCTGGGATGTTCTCGAAAAATGAGAAGTGGTAAAAGATTTGAAGATGTTAGATCTGTTGTTAACTGTGAGGTAAAGCGAAATCTTGAGTAAAAATATGATTTGAAATTATGTTTAATCTCAGATTCAGATCTTTTTACTTCAAAGAGATAACAAACAAAACAAGTTTATTTGAAATGTAATTTGATTTGAATTTTCTTGAAATGCTGGGAAAGTAGAATTCTGATTGATTGGCTATTAAGTTTCTTTTTTAGATCTGCAAATCATTGAAGCTGATAAAAGTGGATCATGAAAATGAAAGGAAAAGGTTGAATTGAAACACCATTTTTTTAAGGAGATGTTTTAAATATTGCAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCGACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGATCTTGTGTTCTGGAAGAACAACTACATGAAGAGAGATCCCACAGCACCTCCCCGGCGAGGACGCGGCAGGCCTCCAAAACCAAAGGGCCCTCTGCCACCCAGTTCTGTTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCACGCCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAAGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

mRNA sequence

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCGACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGATCTTGTGTTCTGGAAGAACAACTACATGAAGAGAGATCCCACAGCACCTCCCCGGCGAGGACGCGGCAGGCCTCCAAAACCAAAGGGCCCTCTGCCACCCAGTTCTGTTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCACGCCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAAGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

Coding sequence (CDS)

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCGACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCCACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGATCTTGTGTTCTGGAAGAACAACTACATGAAGAGAGATCCCACAGCACCTCCCCGGCGAGGACGCGGCAGGCCTCCAAAACCAAAGGGCCCTCTGCCACCCAGTTCTGTTTTATCCCCGCCAAAGCCGAGAGGCCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAACGCCAGTGCAGATGAAGGTATCTTCTGGGACTGGAAAACCAAGAGGACGGCCAAGGAAATTCCCTCGGCCAGCAACCACGCCAGCTCCTCCGGCACCGAGCGGGAGGCCCAGAGGTCGACCTCCTAAGGTGAAAGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

Protein sequence

MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ

Homology

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BLAST of HG10011273 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 330.5 bits (846), Expect = 9.1e-87
Identity = 170/180 (94.44%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFP+ ATTPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

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BLAST of HG10011273 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 5.9e-86
Identity = 168/180 (93.33%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGK RGRPRKFP   T P+PP PSGRPRGRPPKVK  LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

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BLAST of HG10011273 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327.8 bits (839), Expect = 5.9e-86
Identity = 171/183 (93.44%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP SVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPP PVQMKVSSGTGKPRGRPRKFPRPAT PAPP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

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BLAST of HG10011273 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 7.7e-86
Identity = 169/180 (93.89%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SSV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFP+ A+TPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

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BLAST of HG10011273 vs. NCBI nr
Match: XP_031739266.1 (HMG-Y-related protein A isoform X1 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 169/196 (86.22%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPE----------------MIFRAIEALNSDNGSNKSTISKYIEST 60
           MAT+EVNKPPSLPPYPE                MIFRAIEALNSDNGSNKSTISKYIEST
Sbjct: 1   MATQEVNKPPSLPPYPEISLLQRDNKPYKFIIKMIFRAIEALNSDNGSNKSTISKYIEST 60

Query: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSV 120
           YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SSV
Sbjct: 61  YGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSV 120

Query: 121 LSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRG 180
           +S PKPRGRPPKDPNAPPKPP PVQMKVSSGTGKPRGRPRKFP+ A+TPAPPAPSGRPRG
Sbjct: 121 ISSPKPRGRPPKDPNAPPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRG 180

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BLAST of HG10011273 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 124/180 (68.89%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           N MK SG+L F +NNYMK DP APP+RGRGRPPKPK PLPP +V+SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPA-PSGRPRGRPPKVKAPLTEVSVQ 180
           PPK P   + K + G+G+PRGRP+K PR     AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSP---KAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of HG10011273 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.4e-44
Identity = 103/156 (66.03%), Postives = 119/156 (76.28%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SG+L F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNAPPKPPTPVQMKVSSGTGKPRGRPR 144
           P+RGRGRPPKPK PLPP +V+SPP+PRGRPPKDPNAPPK P   + K +  TG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSP---KAKATPATGRPRGRPK 120

Query: 145 KFPRPATTPAPPAPS-GRPRGRPPKVKAPLTEVSVQ 180
           K  R    P+P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of HG10011273 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-34
Identity = 95/178 (53.37%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPK---------GPLPPSSVLS--PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K           +  ++V+S  PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPTPVQMKVSSGTGKPRGRPRKFPR-PATTPAPPAPSG------RPRGRPPKVK 171
            P  P  P Q KV +G+G+PRGRP K PR  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of HG10011273 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.0e-33
Identity = 99/188 (52.66%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGDLVFWKNNYMKRD-PTAPPRRGRGRPPK---PKGPLP-PSSVLSPPKPRGRPP 120
             MK SG+LVF KNNY +   P APP+RGRGRPPK   P  P P P S  S  + RGRPP
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPP 120

Query: 121 KDPNAPPKPPTPVQMK-VSSGTGKPRGRPRK--------FPRPATTPAP----PAPSGRP 171
           K      K P    +K  ++G  KPRGRP K         P P+  PAP      P  R 
Sbjct: 121 K-----AKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRG 180

[Close]

BLAST of HG10011273 vs. ExPASy TrEMBL
Match: A0A5D3DJY3 (HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold428G00090 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.4e-87
Identity = 170/180 (94.44%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFP+ ATTPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of HG10011273 vs. ExPASy TrEMBL
Match: A0A1S3C432 (HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.4e-87
Identity = 170/180 (94.44%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SS +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFP+ ATTPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of HG10011273 vs. ExPASy TrEMBL
Match: A0A6J1J6G8 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 171/183 (93.44%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP SVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPP PVQMKVSSGTGKPRGRPRKFPRPAT PAPP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of HG10011273 vs. ExPASy TrEMBL
Match: A0A6J1F494 (HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.9e-86
Identity = 171/183 (93.44%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLPP SVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPP PVQMKVSSGTGKPRGRPRKFPRPAT PAPP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of HG10011273 vs. ExPASy TrEMBL
Match: A0A0A0LCH9 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.7e-86
Identity = 169/180 (93.89%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120
           NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPK K PLP SSV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPTPVQMKVSSGTGKPRGRPRKFPRPATTPAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPP PVQMKVSSGTGKPRGRPRKFP+ A+TPAPPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of HG10011273 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-35
Identity = 95/178 (53.37%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPK---------GPLPPSSVLS--PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K           +  ++V+S  PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPTPVQMKVSSGTGKPRGRPRKFPR-PATTPAPPAPSG------RPRGRPPKVK 171
            P  P  P Q KV +G+G+PRGRP K PR  + T A P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of HG10011273 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 77/221 (34.84%), Postives = 95/221 (42.99%), Query Frame = 0


Query: 3   TEEVNKPPSL--PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 62
           T  V   PS+  PPY +MI  AI ALN  +GS+K  IS+YIE  Y  +PT H +LLTHHL
Sbjct: 64  TSPVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHL 123

Query: 63  NMMKASGDLVFWKNNY-MKRDPTAPP---------------------------------- 122
             +K SG LV  K +Y +   P  PP                                  
Sbjct: 124 KTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQ 183

Query: 123 --RRGRGRPPKPKGPLPPSSVLSPPK--------PRGRPPKDPNAPPKPPTPVQMKVSSG 172
             +RGRGRPPK K  +     L+  K        P  RP +    PP+ P   Q  V   
Sbjct: 184 TIKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVK-- 243

[Close]

BLAST of HG10011273 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-11
Identity = 70/208 (33.65%), Postives = 88/208 (42.31%), Query Frame = 0


Query: 13  PPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGDLVFW 72
           PPY EMI  AI ALN  +GS+K  IS+YIE  Y  L + H++LLTHHL  +K SG L   
Sbjct: 66  PPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMV 125

Query: 73  KNNY---------------------------------MKRDPTA------PPRRGRGRPP 132
           K +Y                                    DP A      P +RGRGRPP
Sbjct: 126 KKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPP 185

Query: 133 KPKGPLPPSSVLSPP-----KPRGRP---PKDPNAPPKPPTPVQMKVSSGTGKPRGRPRK 172
           KPK    P  +   P     +  G+P    +   +P   PTPV      G G+PR     
Sbjct: 186 KPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSA 245

[Close]

BLAST of HG10011273 vs. TAIR 10
Match: AT5G08780.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 6   VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKA 65
           +++ P  P Y  MIF AI  LN + G+++  IS++I+S Y NLP  H++LL+HHL  +  
Sbjct: 49  LSRTPDHPTYSAMIFIAIMDLNKEGGASEDAISEFIKSKYKNLPFAHTNLLSHHLAKLVE 108

Query: 66  SGDLVFWKNN 76
             +++   NN
Sbjct: 109 KREILCDCNN 118

The following BLAST results are available for this feature:

BLAST of HG10011273 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456999.1	9.1e-87	94.44	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_038878302.1	5.9e-86	93.33	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_022935331.1	5.9e-86	93.44	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_004145857.1	7.7e-86	93.89	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_031739266.1	1.0e-82	86.22	HMG-Y-related protein A isoform X1 [Cucumis sativus]	[more]

BLAST of HG10011273 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	2.1e-57	68.89	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	3.4e-44	66.03	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	9.3e-34	53.37	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	6.0e-33	52.66	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of HG10011273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJY3	4.4e-87	94.44	HMG-Y-related protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C432	4.4e-87	94.44	HMG-Y-related protein A-like OS=Cucumis melo OX=3656 GN=LOC103496787 PE=4 SV=1	[more]
A0A6J1J6G8	2.9e-86	93.44	HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482196 PE=4 SV...	[more]
A0A6J1F494	2.9e-86	93.44	HMG-Y-related protein A-like OS=Cucurbita moschata OX=3662 GN=LOC111442250 PE=4 ...	[more]
A0A0A0LCH9	3.7e-86	93.89	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G284020 PE=4 SV...	[more]

BLAST of HG10011273 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	6.6e-35	53.37	high mobility group A	[more]
AT1G48620.1	1.6e-12	34.84	high mobility group A5	[more]
AT3G18035.1	2.3e-11	33.65	winged-helix DNA-binding transcription factor family protein	[more]
AT5G08780.1	3.1e-08	38.57	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 86..96 score: 69.32 coord: 158..168 score: 68.56 coord: 106..117 score: 61.46
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 137..149 e-value: 10.0 score: 9.6 coord: 86..98 e-value: 140.0 score: 3.1 coord: 160..172 e-value: 2.4 score: 13.2 coord: 108..120 e-value: 0.79 score: 15.8
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 126..145 score: 37.86 coord: 84..96 score: 58.24 coord: 99..110 score: 36.9
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.8E-22 score: 90.0
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 1.6E-9 score: 38.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.828608
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..85 e-value: 1.0E-13 score: 53.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..128
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..175
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..175
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10011273.1	HG10011273.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding