HG10010840 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010840
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ycf20-like protein
Location	Chr06: 26381381 .. 26385119 (+)
RNA-Seq Expression	HG10010840
Synteny	HG10010840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTCAATGAGGTTGTTATCCACATTTCCAAGAACTAGTAAGCTTCAGTCTCCAAATTATGCGAAAACAAAAGTTTCAGTGCCAGGCCTCGTAGCATGCTTTTACAACACTTATGTGCTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTGACCAAACCTTCAGTGCTAAAGAACTTCAAGTAAGTTACCATGTGATGGTGGACATCCTATTGTCTACTTAAGGTAGTTGTAGTTGATAGGTTCTATATTACTTATGCTATTCTTTTATGGTGTTAGGAGCATCGAAATGTTGAATTTGACGCATATGATTATTCCCATCAATTTCAAATTTGTTCAAGAAATGAAAATGATTAAGTCGGTCGAGTAGCTTCTTGCCTTCTCTGCATCTCTCAATCATTGTGCTATACAAATTGTACTCTACAGTTTCATACTTGGTAGAACTTAAACGTCACAAGTTCATTGCAAAGCGTGTGATAAAATTTCTCTTGGGCCCTTGGAAACTCAAGGGAATTAATGATGTTATACTTAAGGATTCACATCCAAGGGAACACAGCGATATGTCATATGTTAAACAAATATTCTCAAAGCCTCCACAGGCATAAATGTTTAAGCTACATTTAACAACACTTGAGAAGAGTCATTACAATTAGTCTATGTTCGTAATTTGCTATTATTCTTCTTGGTACAGGAAGATGGCGTTGTCCATTAGGGGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAACTCCAATGGCAGAACGAGACTGATACGCATTATTCAAGCTATTCAAACCAAGTTGAATGCAAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTCTGAACAAGATTAAAGACCTAATAATCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGTAATTCATATAATTTATTAACACATTCAAATTCATGGCTGTATATCTACAAATTCCATTAACTTGGCTTTATATTTTTTCAAGCTCTGAGTACAGGGGATGGCACATCCAGTTCATGGATCTGAAGCCCTGGGACAAACATGGTTGCTGTTCGAAGGCTTTCTAAGAACTGTGAGTAACTTAAGAAAGCTTTTGGATACCCGTTGTCTAACCTACTAGCTGGATCTTCTGACTTATGAATTGTAGGGTCTTTGGTAAAATGCTGTAGTTATTGAAATTAACTACAATATTCCTAGAAAAACAAAGGTTTAAATACTACTTTCATCCCCACACTTTTAAAATGTTCGTTTTGGTTCATATATTTTAAACTTTGGTTCATTTTGGTCCCTATACTCTCAAAATATTCATTTTGGTCAATATACTTTCAACTTTGGTTTATTTTAGTCCCTACATTTTTAAAAGGTCATCATTTTTTCTCCTTAAAAATGAAAATGAATATTTTGATTTTGAAAGTGTAAGGACTAAAATGAATAAAAAATTAAAAGTACATGGACAAAATTAACTAAATTCTAAAATACAACGTCTGAAATAGTATTTAAACCAAAACAAATATGCGGAGTTAAGTGGTAGCTGTAGAGAAGAAGTATGGATGTGTAAATGGGCTGGACCTGCAGTGAGGCCCATCAATAGGTAAGCCCAATTCCAGGTTCCCCTTTAGATTAAAACCCTAGCGCCGCCGGCTGTCGCTTTGCTTGCTTTACAAAGAAAGTTGGCTTTGCCACACGCGAGAAAGTAGCTCCTTGAGGCGCGTGATTGCGTTTTGTATTTTTGCCTGTCAAATAAAGGCGTATGGGCCCACATCCCACAAAAAAAAACCCAAGAATTTGATTTTCTTAAAAATATATGTAGTTGGTTGTTTCAATAAAGTTAAAAAATATGCAAATAATTTACTCTTTAAACTTAAATTAGTTTTATGAACTTTTAAATTTGTAACAATTAACTATTTAATTTTTATATTTTAAAATTTGTATCAAATTAGTATTTATCTTGAAAGTTTTGATTTTAAATCAGTTTATCGGTCCATATGTATAAAATTTCAGTAAACTTTAATAATATTTTTCACTAAAGGAATTAAATCGTCATACATGGTTAAAGTACAATAACTAAATTGTTACTTATTAGAGTTTAAGGACTAAATCATCACTAACCAAAATTTAAAGATTACATTATTGCTTTCATACATGCTGGGGTACCAAAAGTGTTTTTTAATCTTTTAATAAAAATAATGTCATATTTTGCTCTCAAACTTTCAAAATATCAAATTTAGTCTATAACCAATATAAAAGCAAACTCTATGAACTTTGTCATATGTTCAGAAAAATACTTTCACGCTTTCAAAAGTTGCAATATTAATCTTGATCTTTCACAAATGTTTCAAAACTATAATTGAAGTAAACATTTTATAGAAATTGGAACAATGTAGCAATGACCTCTAACAATAGTATTACAATGTTTGAAGGAATATAAATACTTTTGAAACAAAGTGTAAAGTTTTGGAGTATTTTTATAATCTAGCTAACATCTATTTTAGTTTTAACTTAAATATATCTCAACTAGTTAAAACATGAATTTTCGACTAAAAAGTTAAATAGTTGAATCACTACCCTCACATATCGTTGAACTAAAAAAAATTAAAATTATTTTAGTCTTTGAACTTTTATATCGAATTTTAGTCACTAAACTTTAAAAGACAATCATTTAAGTAATTGATGTATTATTTTGTAACCTAATATTCATTGACTCAATACATGATTTAACCTATGTAGCCTAAATACACGTGGATGTGAATAAGCTAAGATAAATGCTTGTACCCATGTTGGCAATTTGCTAAAAAAAAAAAAAAAAAAAAAAGACTATAAAAGGTAAAGACTAAAATAAGTTTTTCCTCCCTCTAAATGCTGTTGAACTGAAACCAAAAAATGTAATTTCTAAATTTATTTAATAAAATTCTCTAAAGTTTCCCTTTAGAAAATTCCTTTCAAAAGACAAAGTCCCTTAGGAAAAAAAAAAATTATATCAGATGTCTATCTAAACTTTTTTTTTACCTCTATCTAATCTTTGGCTTTCAAAAATAACACAGAACTAATAAAAATTATCAACCATAAAAAAATTTGAAAATTTAAAATAGTAAGGATTAAGTTTAAACTATCCGGCTATCCCCAATTTACATGACCAAATTTATAATTTAACTATTTTTATTTTACATAATTGTATTTTTTTTGCCTGAAAAATATAATTGTTATTCTACTAATTTTGCTAAAAATTAATTTTGTGGACTAAACTTGAATAAAAATTGAATATTTTGAAAATACAATGGCAAAATGTTATTTTAAGCATTATTTTAATTGCCGCTTTTTAACTGTCACGGCCCACGGGGCAGCAATTGGAAAGCGTGCTCTTCCACAGTGCTTAGCTTATTTTATTGGCTCACTCTCCGTTACTTATTCCATTTCCAAATTTTCATTCCTTCGCACATTTTTCAGCTCTCCGCTACCTCCATCAACTCCCTCGCTCTTCCTCAGTAG

mRNA sequence

ATGGCAATTTCAATGAGGTTGTTATCCACATTTCCAAGAACTAGTAAGCTTCAGTCTCCAAATTATGCGAAAACAAAAGTTTCAGTGCCAGGCCTCGTAGCATGCTTTTACAACACTTATGTGCTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTGACCAAACCTTCAGTGCTAAAGAACTTCAAGAAGATGGCGTTGTCCATTAGGGGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAACTCCAATGGCAGAACGAGACTGATACGCATTATTCAAGCTATTCAAACCAAGTTGAATGCAAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTCTGAACAAGATTAAAGACCTAATAATCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGGGATGGCACATCCAGTTCATGGATCTGAAGCCCTGGGACAAACATGGTTGCTGTTCGAAGGCTTTCTAAGAACTCTCTCCGCTACCTCCATCAACTCCCTCGCTCTTCCTCAGTAG

Coding sequence (CDS)

ATGGCAATTTCAATGAGGTTGTTATCCACATTTCCAAGAACTAGTAAGCTTCAGTCTCCAAATTATGCGAAAACAAAAGTTTCAGTGCCAGGCCTCGTAGCATGCTTTTACAACACTTATGTGCTCCATGGTCAACTTCACCATCAGTGTTGTTCCTTCTATGTGACCAAACCTTCAGTGCTAAAGAACTTCAAGAAGATGGCGTTGTCCATTAGGGGCAGTGTGGAAGGGAGTCCATTTGATCCTCCTTCAAATAACTCCAATGGCAGAACGAGACTGATACGCATTATTCAAGCTATTCAAACCAAGTTGAATGCAAGAATCAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTCTGAACAAGATTAAAGACCTAATAATCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGGGATGGCACATCCAGTTCATGGATCTGAAGCCCTGGGACAAACATGGTTGCTGTTCGAAGGCTTTCTAAGAACTCTCTCCGCTACCTCCATCAACTCCCTCGCTCTTCCTCAGTAG

Protein sequence

MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSVLKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLENGMAHPVHGSEALGQTWLLFEGFLRTLSATSINSLALPQ

Homology

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BLAST of HG10010840 vs. NCBI nr
Match: KAG6574801.1 (Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 422.2 bits (1084), Expect = 3.2e-114
Identity = 215/243 (88.48%), Postives = 222/243 (91.36%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA  MRLLST+PRTSKLQSP YAKT+VSVPGL ACFYNTYVLHGQLHHQ  SFYVTKPSV
Sbjct: 350 MAFPMRLLSTYPRTSKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFYVTKPSV 409

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIR SVE SPFDPPSN+SNGRTRL RII AIQTKLNARINELRKNLPLKIL
Sbjct: 410 LKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKIL 469

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWDVLSAALAV VVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 470 FFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFN 529

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLENGMAHPVHGSEALGQTWLLFEGFLRT 240
           YWKAGLSMGLFLDSFK+EMDDIFGLHNLFHLYLEN M  P++GSEALGQT LLFEGF + 
Sbjct: 530 YWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENRMEPPIYGSEALGQTLLLFEGFPKN 589

Query: 241 LSA 244
             A
Sbjct: 590 CDA 592

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BLAST of HG10010840 vs. NCBI nr
Match: XP_004145006.1 (ycf20-like protein [Cucumis sativus])

HSP 1 Score: 407.1 bits (1045), Expect = 1.1e-109
Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA SMRLLST+PRTSKLQSPNY +T+VSVPGLVACFY+TYVLHG LHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEG+PFDPPS+NSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWD+LSAALAVVVVEGIGALMYRASLPLLNKIKDLI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYL N
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHN 215

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BLAST of HG10010840 vs. NCBI nr
Match: KGN46257.2 (hypothetical protein Csa_004976 [Cucumis sativus])

HSP 1 Score: 407.1 bits (1045), Expect = 1.1e-109
Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA SMRLLST+PRTSKLQSPNY +T+VSVPGLVACFY+TYVLHG LHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEG+PFDPPS+NSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWD+LSAALAVVVVEGIGALMYRASLPLLNKIKDLI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYL N
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHN 215

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BLAST of HG10010840 vs. NCBI nr
Match: XP_038875296.1 (ycf20-like protein isoform X2 [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 5.9e-108
Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MAIS RLLST+PRTSKLQSPNYAKT+ SV GLVACFY+TYVLHGQLHHQ CS YVTKPSV
Sbjct: 1   MAISTRLLSTYPRTSKLQSPNYAKTRGSVSGLVACFYDTYVLHGQLHHQYCSCYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 215

[Close]

BLAST of HG10010840 vs. NCBI nr
Match: XP_038875295.1 (uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 5.9e-108
Identity = 205/215 (95.35%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MAIS RLLST+PRTSKLQSPNYAKT+ SV GLVACFY+TYVLHGQLHHQ CS YVTKPSV
Sbjct: 41  MAISTRLLSTYPRTSKLQSPNYAKTRGSVSGLVACFYDTYVLHGQLHHQYCSCYVTKPSV 100

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 101 LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 160

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 161 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFN 220

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN
Sbjct: 221 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 255

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BLAST of HG10010840 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 5.5e-24
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 52  SFYVTKPSVLKNFKKMALSIRGSVEGSPFDPPSNNSN----GRTRLIRIIQAIQTKLNAR 111
           SF + +P+    F   AL    S+ G   +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 112 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYR--AS 171
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 172 LPLLNKIKDLIIMFNYWKAGLSMGLFLDSFK 197
                K++  ++  N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

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BLAST of HG10010840 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.0e-14
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 91  TRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALA 150
           TRL      I   L+++I     N P+KIL  L+GF+ AT  ATV GQTGDWDVL A + 
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 151 VVVVEGIGALMYRASLPLLNKIKDL----IIMFNYWKAGLSMGLFLDSFK 197
           V ++E +G  MY        ++ D+    +I  NY K GL  GLF+D+FK
Sbjct: 64  VAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

[Close]

BLAST of HG10010840 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 90  RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 149
           +TRL      +   LN ++      L   ++  L+GF+ +T  +T+ GQTGDW +++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 150 AVVVVEGIGALMYRASLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFK 197
            V   E    ++Y +   L  KI     +FN +K G++ GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIKIN----LFNNFKIGITYGLFVDAFK 105

[Close]

BLAST of HG10010840 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 97  IQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEG 156
           +Q + ++L   +NEL   L    +  L+GF+ +T  +T+ GQTGDW +++A+L V  +E 
Sbjct: 14  VQNLSSRLYYSLNELTAGL----ISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIEL 73

Query: 157 IGALMYRASLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFK 197
           +  ++Y        K    I + N  K G++ GLF+D+FK
Sbjct: 74  VSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

[Close]

BLAST of HG10010840 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 90  RTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 149
           RTRL  I++    +L+       + + L +L FL GF+  TA AT  GQ   WDV+ AA 
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 150 AVVVVEGIGALMYRASLPLLNKIKDL-IIMFNYWKAGLSMGLFLDSFK 197
            ++  E +    YR  +    K+ DL   + N +K G+S  LFL++FK
Sbjct: 63  ILLFCELVNRWFYRRGV----KMGDLQAEVLNIFKMGVSYSLFLEAFK 106

[Close]

BLAST of HG10010840 vs. ExPASy TrEMBL
Match: A0A0A0K9U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.2e-110
Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA SMRLLST+PRTSKLQSPNY +T+VSVPGLVACFY+TYVLHG LHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYPRTRVSVPGLVACFYDTYVLHGHLHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEG+PFDPPS+NSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWD+LSAALAVVVVEGIGALMYRASLPLLNKIKDLI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYL N
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLHN 215

[Close]

BLAST of HG10010840 vs. ExPASy TrEMBL
Match: A0A6J1H7K4 (uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC111460299 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.6e-105
Identity = 198/215 (92.09%), Postives = 202/215 (93.95%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA  MRLLST+PRTSKLQSP YAKT+VSVPGL ACFYNTYVLHGQLHHQ  SFYVTKPSV
Sbjct: 1   MAFPMRLLSTYPRTSKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIR SVE SPFDPPSN+SNGRTRL RII AIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWDVLSAALAV VVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFK+EMDDIFGLHNLFHLYLEN
Sbjct: 181 YWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 215

[Close]

BLAST of HG10010840 vs. ExPASy TrEMBL
Match: A0A6J1L1A0 (uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498957 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.1e-103
Identity = 196/215 (91.16%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA  MRLLS +PRTSKLQSP YAKT+VSVPGL ACFYNTYVLHGQLHH   SFYVTKPSV
Sbjct: 1   MAFPMRLLSPYPRTSKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHHSFSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIR SVE SPFDPPSN+SNGRTRL RII AIQTKLNARINELRKNLPLKIL
Sbjct: 61  LKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWDVLSAALAV VVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFK+EMDDIFGLHNLFHLYLEN
Sbjct: 181 YWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 215

[Close]

BLAST of HG10010840 vs. ExPASy TrEMBL
Match: A0A1S3CBS0 (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.8e-102
Identity = 194/215 (90.23%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MAISMRLLSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSV 60
           MA SMRLLST+PRTSKLQSPNY +T+VSVPGLVACF+        LHHQCCSFYVTKPSV
Sbjct: 1   MATSMRLLSTYPRTSKLQSPNYQRTRVSVPGLVACFH--------LHHQCCSFYVTKPSV 60

Query: 61  LKNFKKMALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKIL 120
           LKNFKKMALSIRGSVEGSPFDPPS+NSNGRTRLIRIIQAIQTKLNARINELRKNLP KIL
Sbjct: 61  LKNFKKMALSIRGSVEGSPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPFKIL 120

Query: 121 FFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFN 180
           FFLVGFYSATAFATVIGQTGDWD+LSAALAVVVVEGIGALMYRASLPLLNKIK LI MFN
Sbjct: 121 FFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFN 180

Query: 181 YWKAGLSMGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           YWKAGLSMGLFLDSFKFEMDDIFG+HNLFHLYL N
Sbjct: 181 YWKAGLSMGLFLDSFKFEMDDIFGIHNLFHLYLHN 207

[Close]

BLAST of HG10010840 vs. ExPASy TrEMBL
Match: A0A6J1DQ25 (ycf20-like protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022766 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.5e-90
Identity = 174/208 (83.65%), Postives = 186/208 (89.42%), Query Frame = 0


Query: 8   LSTFPRTSKLQSPNYAKTKVSVPGLVACFYNTYVLHGQLHHQCCSFYVTKPSVLKNFKKM 67
           LST+PRT  LQSP    +++SVPGL  CFY+T+V  G+ HHQC SF V KPSVLKNFKKM
Sbjct: 7   LSTYPRTIMLQSPKGVTSRLSVPGLAECFYDTHVFCGKHHHQCYSFSVAKPSVLKNFKKM 66

Query: 68  ALSIRGSVEGSPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFY 127
           ALSIR SVEGSPFDPP N+SNG TRLIRIIQAIQTKL+A+INELRKNLPLKI FFLVGFY
Sbjct: 67  ALSIRSSVEGSPFDPPPNSSNGGTRLIRIIQAIQTKLDAKINELRKNLPLKIFFFLVGFY 126

Query: 128 SATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKDLIIMFNYWKAGLS 187
           SATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIK LI MFNYWKAGLS
Sbjct: 127 SATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLS 186

Query: 188 MGLFLDSFKFEMDDIFGLHNLFHLYLEN 216
           MGLFLDSFK+EMDDIFGLHN F L+LEN
Sbjct: 187 MGLFLDSFKYEMDDIFGLHNFFPLFLEN 214

[Close]

BLAST of HG10010840 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-42
Identity = 88/155 (56.77%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 50  CCSFYVTKPSVLKNFKKMA-LSIRGSVEGSPFDP----PSNNSNGRTRLIRIIQAIQTKL 109
           C   +  +P ++++ ++M+  +I+ SV G  FDP     SNNS+   RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 110 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRA 169
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV+VVE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 170 SLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFKFEM 200
           S+PL+NK++  I MFNYWK GL++GLFLDSFK+E+
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190

[Close]

BLAST of HG10010840 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-42
Identity = 88/153 (57.52%), Postives = 117/153 (76.47%), Query Frame = 0


Query: 50  CCSFYVTKPSVLKNFKKMA-LSIRGSVEGSPFDP----PSNNSNGRTRLIRIIQAIQTKL 109
           C   +  +P ++++ ++M+  +I+ SV G  FDP     SNNS+   RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 110 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRA 169
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV+VVE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 170 SLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFKF 198
           S+PL+NK++  I MFNYWK GL++GLFLDSFKF
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKF 188

[Close]

BLAST of HG10010840 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-42
Identity = 88/153 (57.52%), Postives = 117/153 (76.47%), Query Frame = 0


Query: 50  CCSFYVTKPSVLKNFKKMA-LSIRGSVEGSPFDP----PSNNSNGRTRLIRIIQAIQTKL 109
           C   +  +P ++++ ++M+  +I+ SV G  FDP     SNNS+   RLI+ IQ +++KL
Sbjct: 36  CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query: 110 NARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYRA 169
             +I E++K+LP K+ F LVGFYSATAF+T IGQTGDWDVLSA LAV+VVE IGALMYRA
Sbjct: 96  LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query: 170 SLPLLNKIKDLIIMFNYWKAGLSMGLFLDSFKF 198
           S+PL+NK++  I MFNYWK GL++GLFLDSFKF
Sbjct: 156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKF 188

[Close]

BLAST of HG10010840 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 112.8 bits (281), Expect = 3.9e-25
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 52  SFYVTKPSVLKNFKKMALSIRGSVEGSPFDPPSNNSN----GRTRLIRIIQAIQTKLNAR 111
           SF + +P+    F   AL    S+ G   +    N +    G TRL RI  A   +L  +
Sbjct: 47  SFQIRRPNRKIAF---ALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGK 106

Query: 112 INELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVVVVEGIGALMYR--AS 171
           IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A + V  +EGIG LMY+  +S
Sbjct: 107 INSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSS 166

Query: 172 LPLLNKIKDLIIMFNYWKAGLSMGLFLDSFK 197
                K++  ++  N+WKAG+ +GLF+D+FK
Sbjct: 167 SMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

The following BLAST results are available for this feature:

BLAST of HG10010840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574801.1	3.2e-114	88.48	Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004145006.1	1.1e-109	94.42	ycf20-like protein [Cucumis sativus]	[more]
KGN46257.2	1.1e-109	94.42	hypothetical protein Csa_004976 [Cucumis sativus]	[more]
XP_038875296.1	5.9e-108	95.35	ycf20-like protein isoform X2 [Benincasa hispida]	[more]
XP_038875295.1	5.9e-108	95.35	uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida]	[more]

BLAST of HG10010840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	5.5e-24	42.38	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	4.0e-14	42.73	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	1.9e-08	32.71	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	1.6e-07	33.00	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	2.7e-07	35.19	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of HG10010840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U0	5.2e-110	94.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1	[more]
A0A6J1H7K4	8.6e-105	92.09	uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1L1A0	2.1e-103	91.16	uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CBS0	6.8e-102	90.23	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1	[more]
A0A6J1DQ25	3.5e-90	83.65	ycf20-like protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022766 PE=...	[more]

BLAST of HG10010840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56830.1	2.1e-42	56.77	Protein of unknown function (DUF565)	[more]
AT3G56830.2	4.6e-42	57.52	Protein of unknown function (DUF565)	[more]
AT3G56830.3	4.6e-42	57.52	Protein of unknown function (DUF565)	[more]
AT1G65420.1	3.9e-25	42.38	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 138..196 e-value: 3.0E-16 score: 59.6
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..205
None	No IPR available	PANTHER	PTHR33787:SF3	YCF20-LIKE PROTEIN	coord: 1..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010840.1	HG10010840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005516	calmodulin binding