HG10010832 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010832
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase sigma factor
Location	Chr06: 26313438 .. 26317483 (+)
RNA-Seq Expression	HG10010832
Synteny	HG10010832

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTTTCAATTCAATTCAAGACCGCGGCTAATTATTCTCACCATCATACCTTTCTTCCCACTGCCAATTCCAGTTACAGTGAGTGTTTTCCTCTCTCATTTTCTCTTTTTCGACCTTTTGTTTTGTGTTGTTCAAATGGGTTTTTGGTGTTTTGGGTTGCTTAATTGTCAAGCTGGGTTAAAATGGCTTGTGAGTAGTTGCTAAGTTCAGCTATATGTTCAAGTTTTTGAGTTGGATTGCTTGAATTGCTGTCCTGAGATTCTTTGTTTTAGGTGGCGCTAGGATTTGAAAATGTGGTTGTTAAGTTCTGGTTTACATTAAAGCATTTCCCAAATGGTGCTGATATTGATGTTGTAGTGTTTGATGATGATTGAAACTTAAATTTCCCTTTTCAAATAATATTGTGCAAGTTTTAAATGGCAGAACGTTCTTCTTGCTACTTGAAATACTAGGTTGTGTTATGGTGCCCAATGGAGTGATTGGGAAATATGTCCAATCCAATTTTCAGAGAAAAAAATTCTAGTAAAAAAACAAAAAGAAACCATAAGGCAAAATATTGATGGAAGTAGTTGATTAAACCAGGCATTCAATTAGTCTATACTTTACCCAAATTATCATTGGTTTGAAGTTCAACAACATGTGGGGTGAAGTGGAGAGATTCAAACATTTGATCGCTTGGTTGAAAGTATATGTCTTAATCAGTTCAGCATAACACTCTAATTATCATTGATGATGTATATAATAGTAGTTGAACAGAATGTTGGCAAGATGTAGCTCTGTCAGTGACAGATCAAATATAGTCACACACAAGGTATCCAACAATGCAGAACAAAAGGGGATTCAGACCAACTTTGGAACTCCTGAAGACCATTGAAAGGCCTCCTTTCCTCTCTTTAAACATATAGTTACCTGTTTCCACATCAGTCTTGAGTTGGTATTTCTTATCTACAGTGGTAAGTAGAATGGAGAAGGAAAGTCTCAAGTATATGAAATTTGGAACAATTTTTTGCTCCGGATGGTGATAGAGCAAGAAGTGAGGTTTTCTGTGTCAATTTCTACTTTTATGGGAAACACTCTTAAAACAACTGATTTCTCATTAGGGTTTCCGTCTGGATGATTAAAGTTTTAGTGGATGAAATTATATTGATGATCCATCTTTACCAAGGGACTGTTTGAATTGACTTTTTTAGTGCTTAAAAACTTTTCTTTTCTCTTAAATACACTTTTTTTAGCATTTAGAAGTCAATCCAAATAGGCCCTAAGTCTATAACCAAGAAGTTCATTCAGGGCGAATAGTGCCATAAATTTTTGTTGAAATTTTTTCTTATACAATTTTGAATCTTGCAGCTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGGCTGGAACGGCTACAACATTCAACGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATAGCAACTCTTCCAGAGCAGGAACAAAATCTCAATCTTCTCCCATACATTTCAAATGGGCCCAATTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCCGTGGAAGGCGATGCTTTGCAACCAAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAATTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACCAGAGCAGCAGAGAAGACTGCTACTAGTGTCGTGTCATTGAAGTCCAGTTCTAGCAGCCGGAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCCGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTCGATTTTCAGTCATTTAACTATTTCCTACAATCATGTCTTTCTAACAGGATCAAATACCACATTGCACTTAGAAAGTGAACATTAATCTGCCAGTAAAAATCTAATTAAATCAACTCATCCAGGCCTTCATTAAATTCAGCTGTAAGAACTCAATTTTACAGTCGATACTAAATCTGGATTTGGTTGTTTGTAACCAAGAAACATAATTTCAAATAACTTTTATAGTCCATCTCAATTGGATAAAATTTTCAAGATAAATTGGGAGTAGAAAAGGTGAAGCAAATGAAGTGGATATACTCAATCCATAGAGAATGAATTTAGCTTTATCCTATTTTACCTAGCTGTTCTCTTCAATTTCGAAGAAGATATGCAGACAAACCTCGGTGAAAGGGCCCCCCATGGCAGTATTAGTTTAAGATTACTGATTGCACTATTATGTTCGTTAAAACTTCCAATAAGTTGTCTGATCCAGCTTCTAAATGGAATCTAATTGTAGTTTCCTTTCTTGAATTTGATTCTCTAATGGAATGCATAGATTGATGCTATTGATCAACATCAAAGGCTCTTTAGATGGTGATTTTGGGTTAATTTTAATATCCTGATTTATTCCTTATATTCCACGTTTTGTGTTTGATTACTGACGTTTGTTCCAACTATTTCCTAATCCAGGACTTACTGAAACTGGAACGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGTACTTTTTCGTTGTTGCACGCCAGCCAAAATGCTTATGAATGGAAACTGAAATTATGAATGTCTTGTTTTAATTTCGAATTACTCATTGCTTGTGTTGTAACGGGCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAGAAATTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCAGTATGTCTCTTTTTACCAGAATTTGTTTGATAAAAAGAAATAAATTACTTTGTCAAATTCATTATAGAACACAAAGGAGAAAAAATATAGCCTATGAAAAGTCCCAATGAACTTGCTAATTGAAGAGATTTCTTTACTCACACTTCTCCAATAATCAACGTTGATGAATTGGCAGTTTCACATGGTGGAAGCAACTTACAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTTAAACCGTCGGTCCGTCTTATTGCTACTTGGTTTCTTTTCTCGTTTCTCATTGCAATATCACCATCTTTGACCTATTTGATTCTCATGCTCTTTTCCAGGAAGTCATTTCCGACCCCGAGGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

mRNA sequence

ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTTTCAATTCAATTCAAGACCGCGGCTAATTATTCTCACCATCATACCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGGCTGGAACGGCTACAACATTCAACGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATAGCAACTCTTCCAGAGCAGGAACAAAATCTCAATCTTCTCCCATACATTTCAAATGGGCCCAATTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCCGTGGAAGGCGATGCTTTGCAACCAAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAATTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACCAGAGCAGCAGAGAAGACTGCTACTAGTGTCGTGTCATTGAAGTCCAGTTCTAGCAGCCGGAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCCGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACTTACTGAAACTGGAACGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAGAAATTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTACAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTTAAACCGTCGGAAGTCATTTCCGACCCCGAGGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Coding sequence (CDS)

ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTTTCAATTCAATTCAAGACCGCGGCTAATTATTCTCACCATCATACCTTTCTTCCCACTGCCAATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGGCTGGAACGGCTACAACATTCAACGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATAGCAACTCTTCCAGAGCAGGAACAAAATCTCAATCTTCTCCCATACATTTCAAATGGGCCCAATTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCCGTGGAAGGCGATGCTTTGCAACCAAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAATTCTCTGAGAGTATAACTGTAAGGTCAAAGCGTCAAACGGAAAGGAAAGCCAGAAGAACCAGAGCAGCAGAGAAGACTGCTACTAGTGTCGTGTCATTGAAGTCCAGTTCTAGCAGCCGGAAGAAGCGTAATTCTTTACAAGAAGTGGACTACTCCGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACTTACTGAAACTGGAACGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCTAGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAGAAATTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAAAGTCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTACAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACATCCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTTAAACCGTCGGAAGTCATTTCCGACCCCGAGGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

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BLAST of HG10010832 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 1043.5 bits (2697), Expect = 6.8e-301
Identity = 560/581 (96.39%), Postives = 567/581 (97.59%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYS-HHHTFLPTANSSYTKVRDPHSLRTQCILSAASP 60
           MSCLLPQFKCHPETFSIQFKTAANY+ HHHTFLPTANSSYTKVRDPHSLRTQCILSAASP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYAPHHHTFLPTANSSYTKVRDPHSLRTQCILSAASP 60

Query: 61  PTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120
           PTS GTATT NVDRL LPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA
Sbjct: 61  PTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120

Query: 121 EAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEP 180
           EAV LAKAAVKVARDAALLANNSNSSRAG KS+SSP    +HFKWAQFMESERADIIGEP
Sbjct: 121 EAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESERADIIGEP 180

Query: 181 VGVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAE 240
           VGVNNRP+E DALQPSTT+SDDMEPTSEELELLQDE SESITVRSKRQTERKARRTRAAE
Sbjct: 181 VGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE 240

Query: 241 KTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           KTATSVVSLKS SSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLL
Sbjct: 241 KTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 581

[Close]

BLAST of HG10010832 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1031.6 bits (2666), Expect = 2.7e-297
Identity = 551/580 (95.00%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDD+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of HG10010832 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 1030.8 bits (2664), Expect = 4.5e-297
Identity = 549/580 (94.66%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANYSHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQSSP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDDMEPTSEELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSV+S KS SSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of HG10010832 vs. NCBI nr
Match: XP_008460093.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo])

HSP 1 Score: 987.6 bits (2552), Expect = 4.4e-284
Identity = 534/580 (92.07%), Postives = 545/580 (93.97%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDD+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of HG10010832 vs. NCBI nr
Match: XP_022155781.1 (RNA polymerase sigma factor sigB [Momordica charantia])

HSP 1 Score: 981.9 bits (2537), Expect = 2.4e-282
Identity = 530/587 (90.29%), Postives = 545/587 (92.84%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHHH FLPTANSS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TS GTATTFNV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NNSNSS+ G KSQSS     +HFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKAR 240
           DIIG PVGVNNRP EGDALQ  T ESD  +PT+EELELLQDE S +I VRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK ATSVVS+KS SSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of HG10010832 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 655.6 bits (1690), Expect = 5.2e-187
Identity = 372/588 (63.27%), Postives = 454/588 (77.21%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T+     H+             +     + QC +S     +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKHN-------------KGSVFFQPQCAVST----S 62

Query: 62  SAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            A   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  PALLTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADII 181
            + AAAAEAV LA+AAVKVA+DA L  N++N++     S ++    KW QF E ERA I+
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNL--LTSSTADKRSKWDQFTEKERAGIL 182

Query: 182 GEPVGVNNRPVEGDALQPSTTESD---DME-PTSEELELLQDEFSESITVRSKRQTERKA 241
           G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQTERKA
Sbjct: 183 GH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA 242

Query: 242 RRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS 301
           RR +  EKTA+ + S+K+ SS +KKR   QEVD++DPLRYLR TTS+S+LLT  EE ELS
Sbjct: 243 RRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELS 302

Query: 302 EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 361
            GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMIKSNIR
Sbjct: 303 AGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIR 362

Query: 362 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 421
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 363 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSD 422

Query: 422 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 481
           QSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PR
Sbjct: 423 QSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPR 482

Query: 482 SLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGM 541
           SL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGM
Sbjct: 483 SLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGM 542

Query: 542 EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           EDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 EDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of HG10010832 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-76
Identity = 153/328 (46.65%), Postives = 223/328 (67.99%), Query Frame = 0


Query: 247 SSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAE 306
           ++ SR++  S ++    D +R         RLL A EE+EL+  I DLL+LER++E L+E
Sbjct: 63  AAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 122

Query: 307 RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQD 366
           +   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G++ QD
Sbjct: 123 KLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 182

Query: 367 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV 426
           L+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+
Sbjct: 183 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRI 242

Query: 427 KEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVI 486
           K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +  + I
Sbjct: 243 KKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI 302

Query: 487 SDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVS 546
            + + ET ED + K  +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I  V+
Sbjct: 303 -ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVT 362

Query: 547 RERIRQIESCAFRKLKNKKRTKHLQQYL 575
           RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 363 RERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of HG10010832 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 273.9 bits (699), Expect = 4.3e-72
Identity = 161/386 (41.71%), Postives = 241/386 (62.44%), Query Frame = 0


Query: 202 SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSL-------------KSSS 261
           ++  ELL      + T ++KR + +KA  T A  + AT++                +   
Sbjct: 17  TQATELLDPALKPAET-KAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDED 76

Query: 262 SSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERY 321
           ++ K +  +++    D +R         RLL A EE+EL+  I DLL LER+++EL E+ 
Sbjct: 77  AAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQL 136

Query: 322 GNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 381
              P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+
Sbjct: 137 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 196

Query: 382 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 441
           QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+
Sbjct: 197 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 256

Query: 442 ARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD 501
             K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +  + I +
Sbjct: 257 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 316

Query: 502 PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRE 561
            + ET ED + K  +++DLE VL +L+PRER V+R R+G++DGRMKTL+EIG++  V+RE
Sbjct: 317 ADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRE 376

Query: 562 RIRQIESCAFRKLKNKKRTKHLQQYL 575
           RIRQIE+ A RKL++  R   L++Y+
Sbjct: 377 RIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of HG10010832 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-65
Identity = 158/417 (37.89%), Postives = 233/417 (55.88%), Query Frame = 0


Query: 197 DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNS 256
           D +   E++EL  +E S+S   +  R+     RR  A +K  T                 
Sbjct: 23  DEDFDDEDIELELEETSDSNDGKKTRRLASARRRDAARKKPYT----------------- 82

Query: 257 LQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE------------- 316
                  D +R         RLL A EE+EL+  I DLLKLER++E+             
Sbjct: 83  ------EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQV 142

Query: 317 ---------LAERYGNEPTFA-----------------QWAAAAGVNQRTLRKRLNYGTL 376
                    + E+   EP  +                 +W A +       ++RL +G  
Sbjct: 143 FLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRR 202

Query: 377 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 436
            K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WW
Sbjct: 203 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 262

Query: 437 IKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRL 496
           I+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R P +EEIA    +++++L
Sbjct: 263 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKL 322

Query: 497 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 556
             +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLE VLD+L+PR
Sbjct: 323 RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPR 382

Query: 557 ERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 575
           ER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 383 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[Close]

BLAST of HG10010832 vs. ExPASy Swiss-Prot
Match: P74565 (RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sigA PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-64
Identity = 145/375 (38.67%), Postives = 219/375 (58.40%), Query Frame = 0


Query: 245 KSSSSSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE 304
           K     + +++++++  Y+ D +R         RLL A EE+EL+  I DLL+LE +++ 
Sbjct: 51  KEKKVRKIRKDAVKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARQIADLLELELIRDN 110

Query: 305 LAERYGNEPTFA--------------------------------------------QWAA 364
           L  +   +P+                                              +W+ 
Sbjct: 111 LTLQLERQPSELEWGKQVWKLETAKQRLVGDKKKEPKKKDIDSYLANPDNELSLENEWSQ 170

Query: 365 AAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 424
               N    R+RL      KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R A
Sbjct: 171 QPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 230

Query: 425 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 484
           EKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R
Sbjct: 231 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRR 290

Query: 485 HPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI 544
            P +EEIAE   +++++L  +  + + P SLE  IG  ++ +  + I + + ET ED + 
Sbjct: 291 KPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVS 350

Query: 545 KQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFR 575
           K  +++DLE VLD+L+PRER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A R
Sbjct: 351 KNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 410

[Close]

BLAST of HG10010832 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1031.6 bits (2666), Expect = 1.3e-297
Identity = 551/580 (95.00%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDD+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of HG10010832 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 1030.8 bits (2664), Expect = 2.2e-297
Identity = 549/580 (94.66%), Postives = 562/580 (96.90%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANYSHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQSSP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDDMEPTSEELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSV+S KS SSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of HG10010832 vs. ExPASy TrEMBL
Match: A0A1S3CBA5 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 987.6 bits (2552), Expect = 2.1e-284
Identity = 534/580 (92.07%), Postives = 545/580 (93.97%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDD+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of HG10010832 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 981.9 bits (2537), Expect = 1.2e-282
Identity = 530/587 (90.29%), Postives = 545/587 (92.84%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T ANYSHHH FLPTANSS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TS GTATTFNV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NNSNSS+ G KSQSS     +HFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKAR 240
           DIIG PVGVNNRP EGDALQ  T ESD  +PT+EELELLQDE S +I VRS+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK ATSVVS+KS SSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of HG10010832 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 975.3 bits (2520), Expect = 1.1e-280
Identity = 521/548 (95.07%), Postives = 530/548 (96.72%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEK 240
           GVN RP+EGDAL+PSTTESDD+EPTSEELELLQDE SESITV+SKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           T TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMG 545
           QEIGEIMG
Sbjct: 541 QEIGEIMG 548

[Close]

BLAST of HG10010832 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 655.6 bits (1690), Expect = 3.7e-188
Identity = 372/588 (63.27%), Postives = 454/588 (77.21%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T+     H+             +     + QC +S     +
Sbjct: 3   SCLLPQFKCPPDSFSIHFRTSFCAPKHN-------------KGSVFFQPQCAVST----S 62

Query: 62  SAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            A   +  +V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  PALLTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADII 181
            + AAAAEAV LA+AAVKVA+DA L  N++N++     S ++    KW QF E ERA I+
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNL--LTSSTADKRSKWDQFTEKERAGIL 182

Query: 182 GEPVGVNNRPVEGDALQPSTTESD---DME-PTSEELELLQDEFSESITVRSKRQTERKA 241
           G  + V++  +  D +  S +  +   D+E    EE+ELL+++ S S+ VRS RQTERKA
Sbjct: 183 GH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA 242

Query: 242 RRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS 301
           RR +  EKTA+ + S+K+ SS +KKR   QEVD++DPLRYLR TTS+S+LLT  EE ELS
Sbjct: 243 RRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELS 302

Query: 302 EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 361
            GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMIKSNIR
Sbjct: 303 AGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIR 362

Query: 362 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 421
           LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 363 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSD 422

Query: 422 QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPR 481
           QSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PR
Sbjct: 423 QSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPR 482

Query: 482 SLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGM 541
           SL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGM
Sbjct: 483 SLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGM 542

Query: 542 EDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 577
           EDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 EDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of HG10010832 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 245.0 bits (624), Expect = 1.5e-64
Identity = 150/391 (38.36%), Postives = 225/391 (57.54%), Query Frame = 0


Query: 183 VEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVV 242
           V+     PS    D +  TS  + L +    +   VRSKRQ ER+A+  RA +       
Sbjct: 158 VDDTEANPSDNIKDSLS-TSSSMSLPE----KGNIVRSKRQLERRAKNRRAPKSNDVDDE 217

Query: 243 SLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 302
                 +S KK+   Q  D  D L+       T +LLTA EE EL   IQ LLKLE+++ 
Sbjct: 218 GYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKT 277

Query: 303 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGM 362
           +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+
Sbjct: 278 KLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGL 337

Query: 363 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 422
           N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++RKS+   SRTIRLP ++   
Sbjct: 338 NFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 397

Query: 423 TYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 482
             +V EARK    E    P  EE+A   G+S ++L  +L   + P S++Q I  +Q+   
Sbjct: 398 LGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTF 457

Query: 483 SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI 542
            E+  D   ET    + KQ M+  +  +L+ L+P+ER++I+ RFG++ G+ ++L EIGEI
Sbjct: 458 QEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEI 517

Query: 543 MGVSRERIRQIESCAFRKLKNKKRTKHLQQY 574
            G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 518 YGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of HG10010832 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-53
Identity = 124/374 (33.16%), Postives = 225/374 (60.16%), Query Frame = 0


Query: 202 SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVD 261
           S+  EL+    ++ + V S+R+ ++KARR+     TA +          R   N++    
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSV---TAENGDQSSLPIGLRTTWNNIDVPR 263

Query: 262 YSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAA 321
              P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAAA
Sbjct: 264 VRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAA 323

Query: 322 GVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 381
           G+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE+
Sbjct: 324 GMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAER 383

Query: 382 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RH 441
           FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G ++
Sbjct: 384 FDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKY 443

Query: 442 PDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIK 501
             DEEIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ +++
Sbjct: 444 AADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMR 503

Query: 502 QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRK 561
           Q  ++D+  +L+ L PRE+QV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  K
Sbjct: 504 QSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAK 563

Query: 562 LKNKKRTKHLQQYL 575
           L+++   + L+ YL
Sbjct: 564 LRDQPNAEDLRYYL 569

[Close]

BLAST of HG10010832 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-46
Identity = 110/303 (36.30%), Postives = 175/303 (57.76%), Query Frame = 0


Query: 274 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 333
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 334 YGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 393
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 394 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLS 453
            +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 454 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDS 513
           +  +   +   ++P SL++    N  +   E++  P+    E+M+ ++ MK ++E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 514 LNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 573
           L  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 417

Query: 574 LMS 577
             S
Sbjct: 418 YSS 417

[Close]

BLAST of HG10010832 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 156.4 bits (394), Expect = 7.0e-38
Identity = 117/360 (32.50%), Postives = 196/360 (54.44%), Query Frame = 0


Query: 227 KARRTRAAEKT-ATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEEL 286
           + RR  A +KT  T V ++   SS ++ R  ++ V   D             +L+  E +
Sbjct: 160 RQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-------------VLSHVEVV 219

Query: 287 ELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 346
            LS+ I+  L+L+  +  L +R G EP+  Q A +  +++  L+  L    L ++K+  S
Sbjct: 220 RLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMS 279

Query: 347 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 406
           N+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++
Sbjct: 280 NVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRA 339

Query: 407 LSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPK 466
           L D SRT+RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K++        
Sbjct: 340 LVDNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVS 399

Query: 467 APRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLN 526
              SL++    + N  P E     I+D   E       +D+     +K+++ K++  +L 
Sbjct: 400 KVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLG 459

Query: 527 PRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 576
            RE+++IR  +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  ++
Sbjct: 460 EREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

The following BLAST results are available for this feature:

BLAST of HG10010832 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875580.1	6.8e-301	96.39	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]
XP_008460092.1	2.7e-297	95.00	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_004154029.1	4.5e-297	94.66	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
XP_008460093.1	4.4e-284	92.07	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]	[more]
XP_022155781.1	2.4e-282	90.29	RNA polymerase sigma factor sigB [Momordica charantia]	[more]

BLAST of HG10010832 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	5.2e-187	63.27	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.3e-76	46.65	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	4.3e-72	41.71	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	3.0e-65	37.89	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
P74565	1.5e-64	38.67	RNA polymerase sigma factor SigA OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]

BLAST of HG10010832 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD00	1.3e-297	95.00	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A0A0K917	2.2e-297	94.66	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A1S3CBA5	2.1e-284	92.07	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A6J1DSR7	1.2e-282	90.29	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A5A7T955	1.1e-280	95.07	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of HG10010832 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	3.7e-188	63.27	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.5e-64	38.36	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	2.7e-53	33.16	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	1.1e-46	36.30	sigma factor 4	[more]
AT1G64860.1	7.0e-38	32.50	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 550..561 score: 59.57 coord: 366..379 score: 52.4 coord: 535..550 score: 54.92 coord: 390..398 score: 82.44 coord: 514..526 score: 50.02
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 535..561
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 342..411 e-value: 1.5E-18 score: 66.3
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 264..296 e-value: 7.7E-5 score: 22.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 497..576 e-value: 1.7E-28 score: 100.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 415..492 e-value: 1.0E-14 score: 56.7
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 179..414 e-value: 1.4E-38 score: 135.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..204
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 39..575
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 39..575
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 504..562 e-value: 1.40328E-14 score: 66.359
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 421..497 e-value: 3.5E-17 score: 62.3
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..576 e-value: 1.6E-189 score: 629.4
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 510..562 e-value: 1.5E-20 score: 72.5
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 340..564 e-value: 4.6E-33 score: 112.1
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 474..573
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 410..461
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 263..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010832.1	HG10010832.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity