HG10010602 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010602
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	BnaCnng29530D protein
Location	Chr06: 23880761 .. 23880982 (-)
RNA-Seq Expression	HG10010602
Synteny	HG10010602

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTTGGTGGGAAAGAGAAAGCTGATACATCCAATTGAAGGCTATGAAGGATTGAGAACTTCGAGGCCTTTGAGGATCAAAGTAGTGATGACTCGAAACAAGCTGAAGGAGCTCATGGCTATGGCTGAGCTCACATTAAATGATGATTTAGGCAGCTTGATCTTTCAAGAATGCTGCCAAGGTAAATTGGATGCTCGTGTTCTTACTTGTGTTTGA

mRNA sequence

ATGGGAAATTTGGTGGGAAAGAGAAAGCTGATACATCCAATTGAAGGCTATGAAGGATTGAGAACTTCGAGGCCTTTGAGGATCAAAGTAGTGATGACTCGAAACAAGCTGAAGGAGCTCATGGCTATGGCTGAGCTCACATTAAATGATGATTTAGGCAGCTTGATCTTTCAAGAATGCTGCCAAGGTAAATTGGATGCTCGTGTTCTTACTTGTGTTTGA

Coding sequence (CDS)

ATGGGAAATTTGGTGGGAAAGAGAAAGCTGATACATCCAATTGAAGGCTATGAAGGATTGAGAACTTCGAGGCCTTTGAGGATCAAAGTAGTGATGACTCGAAACAAGCTGAAGGAGCTCATGGCTATGGCTGAGCTCACATTAAATGATGATTTAGGCAGCTTGATCTTTCAAGAATGCTGCCAAGGTAAATTGGATGCTCGTGTTCTTACTTGTGTTTGA

Protein sequence

MGNLVGKRKLIHPIEGYEGLRTSRPLRIKVVMTRNKLKELMAMAELTLNDDLGSLIFQECCQGKLDARVLTCV

Homology

[Close]

BLAST of HG10010602 vs. NCBI nr
Match: KAG7013803.1 (hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 3.2e-22
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-SRPLRIKVVMTRNKLKELMAMAELTLNDDLGSLIFQE 60
          MGN +GKR++IHPIEG+EGLR+ SRPLRIKVVMTRN+LKELMAMA+L+L DDL SLI QE
Sbjct: 1  MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMADLSLCDDLASLILQE 60

Query: 61 CCQGKLDARVLTCV 74
          CC+GK DAR+LT V
Sbjct: 61 CCRGKFDARLLTSV 74

[Close]

BLAST of HG10010602 vs. NCBI nr
Match: KAF3963623.1 (hypothetical protein CMV_012006 [Castanea mollissima])

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-SRPLRIKVVMTRNKLKELMAMAELTL-NDDLGSLIFQ 60
          MGN  G++K +HP++  +G+R  S  LRI+V M++ +LKE+M   +LT  N DLG LI Q
Sbjct: 1  MGNSFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRELKEMMDQVDLTQGNSDLGGLIMQ 60

Query: 61 ECCQGKLDARVL 71
          EC +G+L+AR L
Sbjct: 61 ECLEGRLNARAL 72

[Close]

BLAST of HG10010602 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-07
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPI---EGYEGLRTSRPLRIKVVMTRNKLKELMAMAELT----LNDDLG 60
          MGN VGK + +HP+   EG  G+ ++  +RIK+ MT+ +LKELMA  ++T     +++LG
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 61 SLIFQECCQGKLDARVL 71
           LI +EC +G+L ARV+
Sbjct: 61 GLILKECLEGRLCARVV 77

[Close]

BLAST of HG10010602 vs. NCBI nr
Match: PQQ16064.1 (hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-06
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIE------GYEGLRTSRPLRIKVVMTRNKLKELMAMAELT----LND 60
          MGN VG+ K +HP E      G     +S  LRIKV MT  KLKELMA  ++T     N 
Sbjct: 1  MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60

Query: 61 DLGSLIFQECCQGKLDARVLTCV 74
          +LG LI +EC +G+  ARV+  V
Sbjct: 61 ELGRLILRECLEGRSRARVVAAV 83

[Close]

BLAST of HG10010602 vs. NCBI nr
Match: VVA25556.1 (PREDICTED: POPTR_0014s10080g [Prunus dulcis])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-----SRPLRIKVVMTRNKLKELMAMAELT----LNDD 60
          MGN VG+ K +HP E     RT     S  LRIKV MT  + KELMA  + T     N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 61 LGSLIFQECCQGKLDARVLTCV 74
          LG LI +EC +G+  ARV+  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

[Close]

BLAST of HG10010602 vs. ExPASy TrEMBL
Match: A0A7N2MCT3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.8e-10
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-SRPLRIKVVMTRNKLKELMAMAELTL-NDDLGSLIFQ 60
          MGN  G++K +HP++  +G+R  S  LRI+V M++ KLKE+MA  +LT  N DLG LI Q
Sbjct: 1  MGNFFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRKLKEMMAQVDLTQGNSDLGGLIMQ 60

Query: 61 ECCQGKLDARVL 71
          EC +G+L+AR L
Sbjct: 61 ECLEGRLNARAL 72

[Close]

BLAST of HG10010602 vs. ExPASy TrEMBL
Match: A0A314ZEY0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19127 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIE------GYEGLRTSRPLRIKVVMTRNKLKELMAMAELT----LND 60
          MGN VG+ K +HP E      G     +S  LRIKV MT  KLKELMA  ++T     N 
Sbjct: 1  MGNWVGRYKGVHPTEDQAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSNS 60

Query: 61 DLGSLIFQECCQGKLDARVLTCV 74
          +LG LI +EC +G+  ARV+  V
Sbjct: 61 ELGRLILRECLEGRSRARVVAAV 83

[Close]

BLAST of HG10010602 vs. ExPASy TrEMBL
Match: A0A5E4FCA7 (PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-----SRPLRIKVVMTRNKLKELMAMAELT----LNDD 60
          MGN VG+ K +HP E     RT     S  LRIKV MT  + KELMA  + T     N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 61 LGSLIFQECCQGKLDARVLTCV 74
          LG LI +EC +G+  ARV+  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

[Close]

BLAST of HG10010602 vs. ExPASy TrEMBL
Match: A0A6J5WG25 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS16000 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-------SRPLRIKVVMTRNKLKELMAMAELT----LN 60
          MGN VG+ K +HP E     RT       S  LRIKV MT  KLKELM   ++T     N
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSSSNSLRIKVRMTAKKLKELMTEVDVTKSPNSN 60

Query: 61 DDLGSLIFQECCQGKLDARVLTCV 74
           +LG LI +EC +G+  AR +  V
Sbjct: 61 SELGRLILRECLEGRSRARFVAVV 84

[Close]

BLAST of HG10010602 vs. ExPASy TrEMBL
Match: A0A6J5U2C9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS16415 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPIEGYEGLRT-------SRPLRIKVVMTRNKLKELMAMAELT----LN 60
          MGN VG+ K +HP E     RT       S  LRIKV MT  KLKELM   ++T     N
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSSSNSLRIKVRMTAKKLKELMTEVDVTKSPNSN 60

Query: 61 DDLGSLIFQECCQGKLDARVLTCV 74
           +LG LI +EC +G+  AR +  V
Sbjct: 61 SELGRLILRECLEGRSRARFVAVV 84

[Close]

BLAST of HG10010602 vs. TAIR 10
Match: AT3G61930.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 1  MGNLVGKRKLIHPI--EGYEGLRTSRP-------LRIKVVMTRNKLKELMAMAELTLNDD 60
          MGN + +   +HP   +G  G     P       +RIKV M R++L+EL+ +A      D
Sbjct: 1  MGNFLRRSCAVHPASGDGGRGRHVDEPPQQRPSSVRIKVRMRRDQLEELLYLARRGDQSD 60

Query: 61 ----LGSLIFQECCQGKLDARVL 71
              +G LI +EC +G+L A VL
Sbjct: 61 DGGKIGFLILKECMEGRLPASVL 83

The following BLAST results are available for this feature:

BLAST of HG10010602 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013803.1	3.2e-22	77.03	hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF3963623.1	4.5e-08	48.61	hypothetical protein CMV_012006 [Castanea mollissima]	[more]
XP_024197720.1	3.8e-07	44.16	uncharacterized protein LOC112200945 [Rosa chinensis]	[more]
PQQ16064.1	3.2e-06	45.78	hypothetical protein Pyn_19127 [Prunus yedoensis var. nudiflora]	[more]
VVA25556.1	4.6e-05	45.12	PREDICTED: POPTR_0014s10080g [Prunus dulcis]	[more]

BLAST of HG10010602 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010602 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7N2MCT3	8.8e-10	51.39	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A314ZEY0	1.6e-06	45.78	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_191...	[more]
A0A5E4FCA7	2.2e-05	45.12	PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV...	[more]
A0A6J5WG25	2.9e-05	44.05	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS16000 PE=...	[more]
A0A6J5U2C9	2.9e-05	44.05	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS16415 PE=4 S...	[more]

BLAST of HG10010602 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61930.1	2.5e-04	34.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010602.1	HG10010602.1	mRNA