HG10010399 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010399
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L29
Location	Chr06: 21869679 .. 21871862 (+)
RNA-Seq Expression	HG10010399
Synteny	HG10010399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGGTATGTGTTTTACTCATACAATCACTTCTGTTCTTGTTCAATCCATTGTTTTCTTCTCTTTTTTAATAGTTTTAATTCTTTGTCTCGTCGATTTGTCGATTTGTGTATAGATGGATCCGAAGTTCCTTAGGAATCAAAGGTACGCGAAGAAACACAATAACAAGAGTGGAGAAAATGCTTCTGAGGAAGAGTAAAGTAGAATGCGCCAAGTTTAGGGTTTTTATAATTTAAGTTTTTCTTATATTGAATCTTTTGTTATCGCTTTTCTTTTTGTTCAGTAGACTTGCTATTTTGACTCAATGTGGAAACTGATGCTTCTGAGGCCTGTTTTTCGACAATACATTATCTGATCTGCATTTTTAAGGCTTGAACTATTGGTTACATCTACATATAGAATCAATTTGTGCCATTGATATTCTTTTCACTCAGCAAAGACATTATCTTCGTTTTAATGGTTGGTTTGATTACAAGTTTATAGTCCCCTTACTCTGATTGATGAATTATGTTCGTGCTTTGTGCTTTTTTGGTTATTGAACTTTTAATTTTGTCAATTATGTCTTTGATATTTAAAGTTTAGGAACAAATAGACAAGAACTTCTAAGTTTAAGGAACTAGACTTGAAATTTGACGTAATGGTTTCAATGGTGTCAATCTTGCTGCGAAGCATTTGACTTGTAGTTTTAGTTTAGTTTTCTATGGTATAATGGGATGAGGGCTTGATTTATTGGGCAACAAGCTTCACAAATTAACCATCATAGGTTGGCCTAACTATAAATAAGGAACATGACTTTAATAAAGGCTAAGAGGTCAAGTTTATCCATAGGAGCCACTTATGAGTTTTCCGGACTCCCAAATGTTGTAAGGTCAGGCGGATTGTGTCGAGATGTGGGTAAGTTGAATCGAACACTCATGAATATAAAAGGAAAAAAATAAGCTTCACAAATTTGACTAAATTTGACTTGTTGATATATGGATAGAACCATTATCGCCGTCTGCTGAGATATTTTCAGAGATGTTTGGATGGAAATTCCCAGATTTTGGATATTATATATTGTATAGTTTCCTTGGAACCCCCTTTCTAATGGGGTTTTTAGGATTATTCCGGCTGAATTTTGCTAATGGAATTTTCTTTTCATAGTAAAATTGCCTAAAAAATTATATTTTTTTTCTCTTCCCTCTCTTCTTTGTGTGTGCTTTATTTACTTCGATTGAATATTTCTGGGCTTCTTTGTATAGAATGTTATGCTACATTAACAAGTTTTTTGTGCCTTTGTAACTGAAAAGAGGTAAAAAAAGCTTTTGAGATAATGTGCTCAAAAAGCTTGATTGTCATATTTTTGGGTTCCAAATTTTATCGGTTCATACTAATGTTTTTTAAAACTCCATGTTATAGTATCAACTTCTTGTCCTGTTTTATTGTTTTATGTGATATATATATATATATATGTTATCAACGAGTTGGTTTGAATCGAGGTTTAAATGTATTGAAAAATTGATAAATTGTTAAGGTAGATTGATATATTTTAAACAATAATAATATATTTAAATTATCAATTTATTTCACCTTTTTAAAAAAAATAATAATAATAAGTTAACATATTTGTCATAATATTAGATCCACATTTGTTATATATATTTTTAAATATTTTGTTATTTTCCCATCATAATCATGTTGAATCTAGCATCCTCAAATACATATATTAGAAAATAGTTAATCACTAATTAGATTCTAAACTTTGAGATTTATATCTATTTTGTTTTCAAACTAGTCTTCTGTCATTTCATTTTCAAACTAGTCTTCTGACTGAATTTCAATGTTTTCCAAAATTCATGGATCTACTAGATGAAAGTTTATTATTTATTAATTTTTCAAATTTTCTTTGAGAATATATGGTTGGTACTTGGTAGTACATACTATTTTCATTATTTCACAAATGCATGTTAAGGTCATTTGAAGTTGCTTGCTTTTTTGTTTCATATATATATATATACATACAATTTAAGATTCGAGCCACAAACTTTGTGATCACTAATACATATCAAGAAGGTAATTTGAATACTCAGTCCAGCAGACAGACATAA

mRNA sequence

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATTCGAGCCACAAACTTTGTGATCACTAATACATATCAAGAAGGTAATTTGAATACTCAGTCCAGCAGACAGACATAA

Coding sequence (CDS)

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCACGCAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACTTCCACCAAAGGGATTCGAGCCACAAACTTTGTGATCACTAATACATATCAAGAAGGTAATTTGAATACTCAGTCCAGCAGACAGACATAA

Protein sequence

MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGIRATNFVITNTYQEGNLNTQSSRQT

Homology

[Close]

BLAST of HG10010399 vs. NCBI nr
Match: XP_038875325.1 (60S ribosomal protein L29-1-like [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. NCBI nr
Match: XP_038875270.1 (60S ribosomal protein L29-1 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. NCBI nr
Match: XP_023000055.1 (60S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal protein L29-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. NCBI nr
Match: XP_022930218.1 (60S ribosomal protein L29-1 [Cucurbita moschata] >KAG7026348.1 60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. NCBI nr
Match: XP_023514068.1 (60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. ExPASy Swiss-Prot
Match: Q9M7X7 (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

[Close]

BLAST of HG10010399 vs. ExPASy Swiss-Prot
Match: Q84WM0 (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

[Close]

BLAST of HG10010399 vs. ExPASy Swiss-Prot
Match: Q24154 (60S ribosomal protein L29 OS=Drosophila melanogaster OX=7227 GN=RpL29 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-07
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGIRATNFVITNTY-QEGNLNTQSS 57
          MAKSKNHT HNQ++KAH+NGIK+P + RH ST G+    F+I   Y ++GNL+ + S
Sbjct: 1  MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGM-DVKFLINQRYARKGNLSREES 56

[Close]

BLAST of HG10010399 vs. ExPASy Swiss-Prot
Match: P05747 (60S ribosomal protein L29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL29 PE=1 SV=3)

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-07
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQ+RKAH+NGIKKP+ +++ S KG+
Sbjct: 1  MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGV 35

[Close]

BLAST of HG10010399 vs. ExPASy Swiss-Prot
Match: Q58DW3 (60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHT HNQSRK H+NGIKKPR  R+ S KG+
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGV 35

[Close]

BLAST of HG10010399 vs. ExPASy TrEMBL
Match: A0A6J1L4P4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. ExPASy TrEMBL
Match: A0A6J1H4N3 (60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. ExPASy TrEMBL
Match: A0A6J1KET9 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. ExPASy TrEMBL
Match: A0A6J1KHA4 (60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. ExPASy TrEMBL
Match: A0A6J1CB13 (60S ribosomal protein L29 OS=Momordica charantia OX=3673 GN=LOC111009591 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQSRKAH+NGIKKPRKHRHTSTKG+
Sbjct: 1  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGM 35

[Close]

BLAST of HG10010399 vs. TAIR 10
Match: AT3G06680.1 (Ribosomal L29e protein family )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 23 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 57

[Close]

BLAST of HG10010399 vs. TAIR 10
Match: AT3G06700.1 (Ribosomal L29e protein family )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

[Close]

BLAST of HG10010399 vs. TAIR 10
Match: AT3G06700.2 (Ribosomal L29e protein family )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

[Close]

BLAST of HG10010399 vs. TAIR 10
Match: AT3G06700.3 (Ribosomal L29e protein family )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

[Close]

BLAST of HG10010399 vs. TAIR 10
Match: AT3G06680.2 (Ribosomal L29e protein family )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MAKSKNHTAHNQSRKAHKNGIKKPRKHRHTSTKGI 36
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+G+
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGM 35

The following BLAST results are available for this feature:

BLAST of HG10010399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875325.1	1.2e-08	97.14	60S ribosomal protein L29-1-like [Benincasa hispida]	[more]
XP_038875270.1	1.2e-08	97.14	60S ribosomal protein L29-1 [Benincasa hispida]	[more]
XP_023000055.1	2.8e-08	94.29	60S ribosomal protein L29-1 [Cucurbita maxima] >XP_023514069.1 60S ribosomal pro...	[more]
XP_022930218.1	2.8e-08	94.29	60S ribosomal protein L29-1 [Cucurbita moschata] >KAG7026348.1 60S ribosomal pro...	[more]
XP_023514068.1	2.8e-08	94.29	60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10010399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M7X7	1.5e-09	85.71	60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1	[more]
Q84WM0	1.5e-09	85.71	60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2	[more]
Q24154	5.4e-07	54.39	60S ribosomal protein L29 OS=Drosophila melanogaster OX=7227 GN=RpL29 PE=1 SV=1	[more]
P05747	7.1e-07	71.43	60S ribosomal protein L29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...	[more]
Q58DW3	1.6e-06	74.29	60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3	[more]

BLAST of HG10010399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L4P4	1.3e-08	94.29	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111499112 PE=3 SV=1	[more]
A0A6J1H4N3	1.3e-08	94.29	60S ribosomal protein L29 OS=Cucurbita moschata OX=3662 GN=LOC111460442 PE=3 SV=...	[more]
A0A6J1KET9	1.3e-08	94.29	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494363 PE=3 SV=1	[more]
A0A6J1KHA4	1.3e-08	94.29	60S ribosomal protein L29 OS=Cucurbita maxima OX=3661 GN=LOC111494362 PE=3 SV=1	[more]
A0A6J1CB13	1.3e-08	94.29	60S ribosomal protein L29 OS=Momordica charantia OX=3673 GN=LOC111009591 PE=3 SV...	[more]

BLAST of HG10010399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06680.1	1.1e-10	85.71	Ribosomal L29e protein family	[more]
AT3G06700.1	1.1e-10	85.71	Ribosomal L29e protein family	[more]
AT3G06700.2	1.1e-10	85.71	Ribosomal L29e protein family	[more]
AT3G06700.3	1.1e-10	85.71	Ribosomal L29e protein family	[more]
AT3G06680.2	1.1e-10	85.71	Ribosomal L29e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1730		coord: 1..59 e-value: 2.4E-19 score: 71.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR12884:SF31	60S RIBOSOMAL PROTEIN L29	coord: 1..44
IPR002673	Ribosomal protein L29e	PFAM	PF01779	Ribosomal_L29e	coord: 3..36 e-value: 2.3E-16 score: 59.8
IPR002673	Ribosomal protein L29e	PANTHER	PTHR12884	60S RIBOSOMAL PROTEIN L29	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010399.1	HG10010399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome