HG10010310 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010310
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Low-density receptor-like protein
Location	Chr06: 20975583 .. 20975957 (-)
RNA-Seq Expression	HG10010310
Synteny	HG10010310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTTTGTTAATTGAATGCTAAATTTGCATGTTTATGCTTGTCTGAGTTCTGAATGGAGTTTGAATTCTTCGTTCTGGACGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

mRNA sequence

ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

Coding sequence (CDS)

ATGGCGTCATCGACGGCAAGGATTACGTTTCGCGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGACGGAAATGATGGAAAGAAGGCCGGATCGGTTGCTATTCGGAAGCTTCTTCATCAGGTTTTGTGA

Protein sequence

MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL

Homology

[Close]

BLAST of HG10010310 vs. NCBI nr
Match: XP_038875265.1 (uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTARITFRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGSVAIR+LLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQVL 95

[Close]

BLAST of HG10010310 vs. NCBI nr
Match: XP_038875268.1 (uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTARITFRVIMVV LLLV FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTARITFRVIMVVFLLLVFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRRLLHQL 94

[Close]

BLAST of HG10010310 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]

BLAST of HG10010310 vs. NCBI nr
Match: XP_011656653.1 (uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.0e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDGNDGKKAGS AIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQM 94

[Close]

BLAST of HG10010310 vs. NCBI nr
Match: XP_008458516.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 5.2e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]

BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A0A0KBE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQVL 96
          SVGWYHDESDSGVHDGNDGKKAGS AIR+LLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]

BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A1S3C994 (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]

BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A1S3C7I8 (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.5e-41
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGV DGNDGKKAGSVAIR+LLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]

BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A6J1EUV5 (uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGSVA R+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]

BLAST of HG10010310 vs. ExPASy TrEMBL
Match: A0A6J1EWN5 (uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111436812 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.1e-40
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSVAIRKLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGSVA R+LLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQM 94

[Close]

BLAST of HG10010310 vs. TAIR 10
Match: AT5G18850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 2  ASSTARITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T RI FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSVAIRKLL 92
          VGWYHDESDSG  +G++ KK+G    R+LL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

The following BLAST results are available for this feature:

BLAST of HG10010310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875265.1	3.6e-42	96.84	uncharacterized protein LOC120067764 isoform X1 [Benincasa hispida]	[more]
XP_038875268.1	2.3e-41	95.74	uncharacterized protein LOC120067764 isoform X2 [Benincasa hispida]	[more]
XP_008458514.1	2.3e-41	96.81	PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo]	[more]
XP_011656653.1	4.0e-41	95.74	uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]	[more]
XP_008458516.1	5.2e-41	95.74	PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo]	[more]

BLAST of HG10010310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBE9	3.0e-42	96.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1	[more]
A0A1S3C994	1.1e-41	96.81	uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C7I8	2.5e-41	95.74	uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1EUV5	4.8e-40	90.43	uncharacterized protein LOC111436812 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EWN5	8.1e-40	90.43	uncharacterized protein LOC111436812 isoform X5 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of HG10010310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18850.1	1.4e-28	65.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010310.1	HG10010310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane