HG10010028 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010028
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	methyltransferase-like protein 13
Location	Chr06: 17238272 .. 17238472 (+)
RNA-Seq Expression	HG10010028
Synteny	HG10010028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTTCAGGATTTTGGAAAATTCTTTGGCCTTCAGCTCAAGGAAGACAGCAACGAAGTGCTTTTTGCTCTTCCCTCAAAGGTCCCTGAGAGCGACGATTTTCTCTCTCGAGCAACTGTCAAGAAACTTTTTGAGTTCAAATACTCAGAAACAGGACACATCACTCTGGATACCATGATGAAGATCAGACCTTTAAAATAA

mRNA sequence

GTGGTTCAGGATTTTGGAAAATTCTTTGGCCTTCAGCTCAAGGAAGACAGCAACGAAGTGCTTTTTGCTCTTCCCTCAAAGGTCCCTGAGAGCGACGATTTTCTCTCTCGAGCAACTGTCAAGAAACTTTTTGAGTTCAAATACTCAGAAACAGGACACATCACTCTGGATACCATGATGAAGATCAGACCTTTAAAATAA

Coding sequence (CDS)

GTGGTTCAGGATTTTGGAAAATTCTTTGGCCTTCAGCTCAAGGAAGACAGCAACGAAGTGCTTTTTGCTCTTCCCTCAAAGGTCCCTGAGAGCGACGATTTTCTCTCTCGAGCAACTGTCAAGAAACTTTTTGAGTTCAAATACTCAGAAACAGGACACATCACTCTGGATACCATGATGAAGATCAGACCTTTAAAATAA

Protein sequence

VVQDFGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRATVKKLFEFKYSETGHITLDTMMKIRPLK

Homology

[Close]

BLAST of HG10010028 vs. NCBI nr
Match: XP_022138562.1 (methyltransferase-like protein 13 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRATVKKLFEFKYSETGHITLDTMMKIRP 64
           FG+ FGLQL+ED NEVLFALPS V  ++D LS+ATV+K  EFKY E GHI +DT+MKIRP
Sbjct: 298 FGQIFGLQLEEDGNEVLFALPSTVAVNEDCLSQATVQKFLEFKYPEIGHIIVDTVMKIRP 357

Query: 65  L 66
           L
Sbjct: 358 L 358

[Close]

BLAST of HG10010028 vs. NCBI nr
Match: KAF8402117.1 (hypothetical protein HHK36_013069 [Tetracentron sinense])

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-06
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRATV--KKLFEFKYSETGHITLDTMMKI 64
           FG  F LQL+ED NEVLFALPS+V   +D    A V  +KLF+FK+ E G   +DT  KI
Sbjct: 733 FGHLFCLQLEEDVNEVLFALPSEVCIKEDCFPEAAVQFQKLFKFKHPERGQSIIDTTQKI 792

Query: 65  RPLK 67
           + LK
Sbjct: 793 KCLK 796

[Close]

BLAST of HG10010028 vs. NCBI nr
Match: XP_019052043.1 (PREDICTED: methyltransferase-like protein 13 [Nelumbo nucifera])

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRAT--VKKLFEFKYSETGHITLDTMMKI 64
           FG  F LQL+ED NEVLFALP +    ++ L +A   ++KL +F  +ETG   LDT  KI
Sbjct: 655 FGHLFSLQLEEDVNEVLFALPRETCIEENSLLKAAPQLEKLLKFTQTETGQNILDTARKI 714

Query: 65  RPLK 67
             LK
Sbjct: 715 TSLK 718

[Close]

BLAST of HG10010028 vs. NCBI nr
Match: DAD23992.1 (TPA_asm: hypothetical protein HUJ06_025455 [Nelumbo nucifera])

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRAT--VKKLFEFKYSETGHITLDTMMKI 64
           FG  F LQL+ED NEVLFALP +    ++ L +A   ++KL +F  +ETG   LDT  KI
Sbjct: 338 FGHLFSLQLEEDVNEVLFALPRETCIEENSLLKAAPQLEKLLKFTQTETGQNILDTARKI 397

Query: 65  RPLK 67
             LK
Sbjct: 398 TSLK 401

[Close]

BLAST of HG10010028 vs. ExPASy TrEMBL
Match: A0A6J1CBG5 (methyltransferase-like protein 13 OS=Momordica charantia OX=3673 GN=LOC111009692 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRATVKKLFEFKYSETGHITLDTMMKIRP 64
           FG+ FGLQL+ED NEVLFALPS V  ++D LS+ATV+K  EFKY E GHI +DT+MKIRP
Sbjct: 298 FGQIFGLQLEEDGNEVLFALPSTVAVNEDCLSQATVQKFLEFKYPEIGHIIVDTVMKIRP 357

Query: 65  L 66
           L
Sbjct: 358 L 358

[Close]

BLAST of HG10010028 vs. ExPASy TrEMBL
Match: A0A1U8PZS1 (methyltransferase-like protein 13 OS=Nelumbo nucifera OX=4432 GN=LOC104590319 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5   FGKFFGLQLKEDSNEVLFALPSKVPESDDFLSRAT--VKKLFEFKYSETGHITLDTMMKI 64
           FG  F LQL+ED NEVLFALP +    ++ L +A   ++KL +F  +ETG   LDT  KI
Sbjct: 655 FGHLFSLQLEEDVNEVLFALPRETCIEENSLLKAAPQLEKLLKFTQTETGQNILDTARKI 714

Query: 65  RPLK 67
             LK
Sbjct: 715 TSLK 718

The following BLAST results are available for this feature:

BLAST of HG10010028 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138562.1	3.8e-14	68.85	methyltransferase-like protein 13 [Momordica charantia]	[more]
KAF8402117.1	4.9e-06	53.13	hypothetical protein HHK36_013069 [Tetracentron sinense]	[more]
XP_019052043.1	4.6e-04	48.44	PREDICTED: methyltransferase-like protein 13 [Nelumbo nucifera]	[more]
DAD23992.1	4.6e-04	48.44	TPA_asm: hypothetical protein HUJ06_025455 [Nelumbo nucifera]	[more]

BLAST of HG10010028 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10010028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBG5	1.8e-14	68.85	methyltransferase-like protein 13 OS=Momordica charantia OX=3673 GN=LOC111009692...	[more]
A0A1U8PZS1	2.2e-04	48.44	methyltransferase-like protein 13 OS=Nelumbo nucifera OX=4432 GN=LOC104590319 PE...	[more]

BLAST of HG10010028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10010028.1	HG10010028.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity