HG10009940 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009940
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 14937052 .. 14937385 (-)
RNA-Seq Expression	HG10009940
Synteny	HG10009940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCGATGACAGCTACCAAGCGATGGCTGACGACGACTATCAAGTGGCGACTAATGACGACTATGGGCAGTCGGAGGAAGAGGATTACAGGAAGCCAAGCTATGAGTGGTGTGATGAGGATGAGGAGCGTCGATATGGGTATATGGAAGAAGGATATGGGTGAAAGAAATACATAAGCTATAACTCAATTTTCAATGGAATAAATTTAGAAATGATGAGATTTGGAAGATTTTGTTGTATTGATATTTGTGGATTTTTTTATTTGTAGGGTGGGGATTCCGACGAGGAGGAAAAGCACGGCCGTCGGAACTATGAGGATAAGTGGGTGA

mRNA sequence

ATGACCACCGATGACAGCTACCAAGCGATGGCTGACGACGACTATCAAGTGGCGACTAATGACGACTATGGGCAGTCGGAGGAAGAGGATTACAGGAAGCCAAGCTATGAGTGGTGTGATGAGGATGAGGAGCGTCGATATGGGTATATGGAAGAAGGATATGGGGTGGGGATTCCGACGAGGAGGAAAAGCACGGCCGTCGGAACTATGAGGATAAGTGGGTGA

Coding sequence (CDS)

ATGACCACCGATGACAGCTACCAAGCGATGGCTGACGACGACTATCAAGTGGCGACTAATGACGACTATGGGCAGTCGGAGGAAGAGGATTACAGGAAGCCAAGCTATGAGTGGTGTGATGAGGATGAGGAGCGTCGATATGGGTATATGGAAGAAGGATATGGGGTGGGGATTCCGACGAGGAGGAAAAGCACGGCCGTCGGAACTATGAGGATAAGTGGGTGA

Protein sequence

MTTDDSYQAMADDDYQVATNDDYGQSEEEDYRKPSYEWCDEDEERRYGYMEEGYGVGIPTRRKSTAVGTMRISG

Homology

[Close]

BLAST of HG10009940 vs. NCBI nr
Match: XP_004136693.1 (uncharacterized protein At5g39570 [Cucumis sativus] >KGN59544.1 hypothetical protein Csa_001323 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 23  YGQSEEEDYRKPSYEWCDEDEERRYGYMEEGYG 56
           YG+SEEEDYRKPSYE  DEDEERRYGY EEGYG
Sbjct: 262 YGRSEEEDYRKPSYERRDEDEERRYGYGEEGYG 294

[Close]

BLAST of HG10009940 vs. NCBI nr
Match: XP_038905403.1 (uncharacterized protein At5g39570 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 3.6e-05
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 23  YGQSEEEDYRKPSYEWCDEDEERRYGYMEEGYG 56
           YG+SEEEDYRKPSYE  DEDEER+YGY EEGYG
Sbjct: 249 YGRSEEEDYRKPSYERRDEDEERQYGYGEEGYG 281

[Close]

BLAST of HG10009940 vs. ExPASy TrEMBL
Match: A0A0A0LF79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824890 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.0e-06
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 23  YGQSEEEDYRKPSYEWCDEDEERRYGYMEEGYG 56
           YG+SEEEDYRKPSYE  DEDEERRYGY EEGYG
Sbjct: 262 YGRSEEEDYRKPSYERRDEDEERRYGYGEEGYG 294

The following BLAST results are available for this feature:

BLAST of HG10009940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136693.1	1.2e-05	87.88	uncharacterized protein At5g39570 [Cucumis sativus] >KGN59544.1 hypothetical pro...	[more]
XP_038905403.1	3.6e-05	84.85	uncharacterized protein At5g39570 [Benincasa hispida]	[more]

BLAST of HG10009940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF79	6.0e-06	87.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824890 PE=4 SV=1	[more]

BLAST of HG10009940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009940.1	HG10009940.1	mRNA