Homology
BLAST of HG10009872 vs. NCBI nr
Match:
XP_038907228.1 (mediator of RNA polymerase II transcription subunit 1 isoform X2 [Benincasa hispida])
HSP 1 Score: 1060.8 bits (2742), Expect = 4.4e-306
Identity = 579/615 (94.15%), Postives = 592/615 (96.26%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGD+WDRDS DPLGKI
Sbjct: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDSWDRDSPDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSN+IDKDALRRSHSMVSRK GERELFHRR ATELK+HNNS+GILSGTSV SSIQKAVFE
Sbjct: 121 LSNKIDKDALRRSHSMVSRKLGERELFHRRAATELKNHNNSNGILSGTSVSSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR 300
TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARA PQLSVKTQRLEELAIKQSR
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARATPQLSVKTQRLEELAIKQSR 300
Query: 301 QLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDA 360
QLIPVTPSM KAMVLN SDKSKPKLASRTGELNV IKGGQ PLSVHANQSRGG VKSDA
Sbjct: 301 QLIPVTPSMTKAMVLNPSDKSKPKLASRTGELNVTIKGGQQQPLSVHANQSRGGLVKSDA 360
Query: 361 QKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
QK +HGKFLVLKPVRENG+SLAAKDVSSPTSNANSMA NSQFALA +V HAPLRSPNNTN
Sbjct: 361 QKSAHGKFLVLKPVRENGISLAAKDVSSPTSNANSMAVNSQFALASAVAHAPLRSPNNTN 420
Query: 421 VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSP 480
VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTS+ SSAVLSDSCSSVKSP
Sbjct: 421 VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSM-SSAVLSDSCSSVKSP 480
Query: 481 SIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEE 540
SI S+ELTREE DMPASPRVIENG VENRNGD SEEVRASCD+GEKTESHV AESLDEE
Sbjct: 481 SISHSNELTREETDMPASPRVIENGAVENRNGDGSEEVRASCDTGEKTESHVAAESLDEE 540
Query: 541 EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSK 600
EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCI+PKIFVPSESHEDSK
Sbjct: 541 EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIKPKIFVPSESHEDSK 600
Query: 601 DGGAGSELSSSDSEA 616
D GAGSELSSSDSEA
Sbjct: 601 D-GAGSELSSSDSEA 613
BLAST of HG10009872 vs. NCBI nr
Match:
XP_008460470.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cucumis melo])
HSP 1 Score: 1057.4 bits (2733), Expect = 4.8e-305
Identity = 574/615 (93.33%), Postives = 592/615 (96.26%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR 300
GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQLSVKTQRLEELAIKQSR
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQLSVKTQRLEELAIKQSR 300
Query: 301 QLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDA 360
QLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP P SVHANQSR GHVK DA
Sbjct: 301 QLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDA 360
Query: 361 QKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
QK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN
Sbjct: 361 QKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
Query: 421 VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSP 480
VSSVERKIASLDLK+GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSP
Sbjct: 421 VSSVERKIASLDLKTGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSP 480
Query: 481 SIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEE 540
SIGQS+ELT EE+ +PASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEE
Sbjct: 481 SIGQSNELTSEEMGIPASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEE 540
Query: 541 EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSK 600
EAAFLRSLGWDE+CGEDEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSK
Sbjct: 541 EAAFLRSLGWDESCGEDEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSK 600
Query: 601 DGGAGSELSSSDSEA 616
D GAGSELSSSDSEA
Sbjct: 601 DDGAGSELSSSDSEA 613
BLAST of HG10009872 vs. NCBI nr
Match:
XP_038907227.1 (mediator of RNA polymerase II transcription subunit 1 isoform X1 [Benincasa hispida])
HSP 1 Score: 1055.4 bits (2728), Expect = 1.8e-304
Identity = 579/618 (93.69%), Postives = 592/618 (95.79%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGD+WDRDS DPLGKI
Sbjct: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDSWDRDSPDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSN+IDKDALRRSHSMVSRK GERELFHRR ATELK+HNNS+GILSGTSV SSIQKAVFE
Sbjct: 121 LSNKIDKDALRRSHSMVSRKLGERELFHRRAATELKNHNNSNGILSGTSVSSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAIK 300
TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARA PQ LSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARATPQVSELSVKTQRLEELAIK 300
Query: 301 QSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVK 360
QSRQLIPVTPSM KAMVLN SDKSKPKLASRTGELNV IKGGQ PLSVHANQSRGG VK
Sbjct: 301 QSRQLIPVTPSMTKAMVLNPSDKSKPKLASRTGELNVTIKGGQQQPLSVHANQSRGGLVK 360
Query: 361 SDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
SDAQK +HGKFLVLKPVRENG+SLAAKDVSSPTSNANSMA NSQFALA +V HAPLRSPN
Sbjct: 361 SDAQKSAHGKFLVLKPVRENGISLAAKDVSSPTSNANSMAVNSQFALASAVAHAPLRSPN 420
Query: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSV 480
NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTS+ SSAVLSDSCSSV
Sbjct: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSM-SSAVLSDSCSSV 480
Query: 481 KSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESL 540
KSPSI S+ELTREE DMPASPRVIENG VENRNGD SEEVRASCD+GEKTESHV AESL
Sbjct: 481 KSPSISHSNELTREETDMPASPRVIENGAVENRNGDGSEEVRASCDTGEKTESHVAAESL 540
Query: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHE 600
DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCI+PKIFVPSESHE
Sbjct: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIKPKIFVPSESHE 600
Query: 601 DSKDGGAGSELSSSDSEA 616
DSKD GAGSELSSSDSEA
Sbjct: 601 DSKD-GAGSELSSSDSEA 616
BLAST of HG10009872 vs. NCBI nr
Match:
XP_008460469.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo] >KAA0067384.1 mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo var. makuwa] >TYK26525.1 mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 1052.0 bits (2719), Expect = 2.0e-303
Identity = 574/618 (92.88%), Postives = 592/618 (95.79%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAIK 300
GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQ LSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300
Query: 301 QSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVK 360
QSRQLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP P SVHANQSR GHVK
Sbjct: 301 QSRQLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVK 360
Query: 361 SDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
DAQK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN
Sbjct: 361 PDAQKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
Query: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSV 480
NTNVSSVERKIASLDLK+GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSV
Sbjct: 421 NTNVSSVERKIASLDLKTGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSV 480
Query: 481 KSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESL 540
KSPSIGQS+ELT EE+ +PASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESL
Sbjct: 481 KSPSIGQSNELTSEEMGIPASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESL 540
Query: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHE 600
DEEEAAFLRSLGWDE+CGEDEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES E
Sbjct: 541 DEEEAAFLRSLGWDESCGEDEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESRE 600
Query: 601 DSKDGGAGSELSSSDSEA 616
DSKD GAGSELSSSDSEA
Sbjct: 601 DSKDDGAGSELSSSDSEA 616
BLAST of HG10009872 vs. NCBI nr
Match:
XP_011655200.1 (mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cucumis sativus] >KGN51281.2 hypothetical protein Csa_009411 [Cucumis sativus])
HSP 1 Score: 1039.6 bits (2687), Expect = 1.0e-299
Identity = 568/615 (92.36%), Postives = 588/615 (95.61%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSV GG N NHHFPSSSSHSDVPSLSQSRNRISKTTGDFD+SRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVAGGGNPNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDSSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR 300
TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR 300
Query: 301 QLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDA 360
QLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP PL VHANQSR GHVK DA
Sbjct: 301 QLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPLLVHANQSRVGHVKPDA 360
Query: 361 QKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
QK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNN N
Sbjct: 361 QKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNIN 420
Query: 421 VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSP 480
VSS+ERKIASLDLK+GTTLEKRPSLSQVQSRNDFF LIKKKTS++SSAVLSDSCSSVKSP
Sbjct: 421 VSSMERKIASLDLKTGTTLEKRPSLSQVQSRNDFFKLIKKKTSMNSSAVLSDSCSSVKSP 480
Query: 481 SIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEE 540
SIGQS+ELT EE+ ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEE
Sbjct: 481 SIGQSNELTSEEMG-TASPRVIENGAVENRNGNSSEEVQVSRDSGEKTESHVAAESLDEE 540
Query: 541 EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSK 600
EAAFLRSLGWDE+CGEDEGLTEEEINSFYREY+NLKPSLK+GRCIQPKIFVPSES DSK
Sbjct: 541 EAAFLRSLGWDESCGEDEGLTEEEINSFYREYVNLKPSLKIGRCIQPKIFVPSESRVDSK 600
Query: 601 DGGAGSELSSSDSEA 616
D GAGSELSSSDSEA
Sbjct: 601 DDGAGSELSSSDSEA 612
BLAST of HG10009872 vs. ExPASy TrEMBL
Match:
A0A1S3CC42 (mediator of RNA polymerase II transcription subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499274 PE=4 SV=1)
HSP 1 Score: 1057.4 bits (2733), Expect = 2.3e-305
Identity = 574/615 (93.33%), Postives = 592/615 (96.26%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEELAIKQSR 300
GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQLSVKTQRLEELAIKQSR
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQLSVKTQRLEELAIKQSR 300
Query: 301 QLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVKSDA 360
QLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP P SVHANQSR GHVK DA
Sbjct: 301 QLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVKPDA 360
Query: 361 QKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
QK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN
Sbjct: 361 QKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPNNTN 420
Query: 421 VSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSVKSP 480
VSSVERKIASLDLK+GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSVKSP
Sbjct: 421 VSSVERKIASLDLKTGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSVKSP 480
Query: 481 SIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESLDEE 540
SIGQS+ELT EE+ +PASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESLDEE
Sbjct: 481 SIGQSNELTSEEMGIPASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESLDEE 540
Query: 541 EAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHEDSK 600
EAAFLRSLGWDE+CGEDEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES EDSK
Sbjct: 541 EAAFLRSLGWDESCGEDEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESREDSK 600
Query: 601 DGGAGSELSSSDSEA 616
D GAGSELSSSDSEA
Sbjct: 601 DDGAGSELSSSDSEA 613
BLAST of HG10009872 vs. ExPASy TrEMBL
Match:
A0A5D3DT29 (Mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001070 PE=4 SV=1)
HSP 1 Score: 1052.0 bits (2719), Expect = 9.8e-304
Identity = 574/618 (92.88%), Postives = 592/618 (95.79%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAIK 300
GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQ LSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300
Query: 301 QSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVK 360
QSRQLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP P SVHANQSR GHVK
Sbjct: 301 QSRQLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVK 360
Query: 361 SDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
DAQK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN
Sbjct: 361 PDAQKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
Query: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSV 480
NTNVSSVERKIASLDLK+GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSV
Sbjct: 421 NTNVSSVERKIASLDLKTGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSV 480
Query: 481 KSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESL 540
KSPSIGQS+ELT EE+ +PASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESL
Sbjct: 481 KSPSIGQSNELTSEEMGIPASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESL 540
Query: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHE 600
DEEEAAFLRSLGWDE+CGEDEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES E
Sbjct: 541 DEEEAAFLRSLGWDESCGEDEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESRE 600
Query: 601 DSKDGGAGSELSSSDSEA 616
DSKD GAGSELSSSDSEA
Sbjct: 601 DSKDDGAGSELSSSDSEA 616
BLAST of HG10009872 vs. ExPASy TrEMBL
Match:
A0A1S3CDT9 (mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499274 PE=4 SV=1)
HSP 1 Score: 1052.0 bits (2719), Expect = 9.8e-304
Identity = 574/618 (92.88%), Postives = 592/618 (95.79%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSVTGG NSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVTGGGNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAIK 300
GSSSFQQTVPATSGAGPLS+TAGLNMAEALVQ+PSR R APQ LSVKTQRLEELAIK
Sbjct: 241 PGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQSPSRTRTAPQVSELSVKTQRLEELAIK 300
Query: 301 QSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVK 360
QSRQLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP P SVHANQSR GHVK
Sbjct: 301 QSRQLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPSSVHANQSRVGHVK 360
Query: 361 SDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
DAQK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN
Sbjct: 361 PDAQKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
Query: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSV 480
NTNVSSVERKIASLDLK+GTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSSV
Sbjct: 421 NTNVSSVERKIASLDLKTGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSSV 480
Query: 481 KSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESL 540
KSPSIGQS+ELT EE+ +PASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESL
Sbjct: 481 KSPSIGQSNELTSEEMGIPASPRVIENGAVENRNGNSSEEVQISRDSGEKTESHVAAESL 540
Query: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHE 600
DEEEAAFLRSLGWDE+CGEDEGLTEEEINSFYREYMNLKPSLK+GRCIQPKIFVPSES E
Sbjct: 541 DEEEAAFLRSLGWDESCGEDEGLTEEEINSFYREYMNLKPSLKIGRCIQPKIFVPSESRE 600
Query: 601 DSKDGGAGSELSSSDSEA 616
DSKD GAGSELSSSDSEA
Sbjct: 601 DSKDDGAGSELSSSDSEA 616
BLAST of HG10009872 vs. ExPASy TrEMBL
Match:
A0A0A0KN63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387430 PE=4 SV=1)
HSP 1 Score: 1034.2 bits (2673), Expect = 2.1e-298
Identity = 568/618 (91.91%), Postives = 588/618 (95.15%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLRSTGSV GG N NHHFPSSSSHSDVPSLSQSRNRISKTTGDFD+SRS
Sbjct: 1 MERSEPTLVPEWLRSTGSVAGGGNPNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDSSRS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
+FLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRD+HDPLGKI
Sbjct: 61 SFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDAHDPLGKI 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSHNNSDGILSGTSVGSSIQKAVFE 180
LSNRIDKDALRRSHSMVSRKQG ELFHRR TELKSHN+S+GILSGTSVGSSIQKAVFE
Sbjct: 121 LSNRIDKDALRRSHSMVSRKQG--ELFHRRVGTELKSHNSSNGILSGTSVGSSIQKAVFE 180
Query: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGNT 240
KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIG+T
Sbjct: 181 KDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGST 240
Query: 241 TGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAIK 300
TGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQ LSVKTQRLEELAIK
Sbjct: 241 TGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQVSELSVKTQRLEELAIK 300
Query: 301 QSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHVK 360
QSRQLIPVTPSMPKAMVL+SSDKSKPKLASRTGELN IKGGQP PL VHANQSR GHVK
Sbjct: 301 QSRQLIPVTPSMPKAMVLSSSDKSKPKLASRTGELNATIKGGQPQPLLVHANQSRVGHVK 360
Query: 361 SDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
DAQK SHGKFLVLKPVRENG+SLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN
Sbjct: 361 PDAQKSSHGKFLVLKPVRENGVSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSPN 420
Query: 421 NTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSSV 480
N NVSS+ERKIASLDLK+GTTLEKRPSLSQVQSRNDFF LIKKKTS++SSAVLSDSCSSV
Sbjct: 421 NINVSSMERKIASLDLKTGTTLEKRPSLSQVQSRNDFFKLIKKKTSMNSSAVLSDSCSSV 480
Query: 481 KSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAESL 540
KSPSIGQS+ELT EE+ ASPRVIENG VENRNG+SSEEV+ S DSGEKTESHV AESL
Sbjct: 481 KSPSIGQSNELTSEEMG-TASPRVIENGAVENRNGNSSEEVQVSRDSGEKTESHVAAESL 540
Query: 541 DEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESHE 600
DEEEAAFLRSLGWDE+CGEDEGLTEEEINSFYREY+NLKPSLK+GRCIQPKIFVPSES
Sbjct: 541 DEEEAAFLRSLGWDESCGEDEGLTEEEINSFYREYVNLKPSLKIGRCIQPKIFVPSESRV 600
Query: 601 DSKDGGAGSELSSSDSEA 616
DSKD GAGSELSSSDSEA
Sbjct: 601 DSKDDGAGSELSSSDSEA 615
BLAST of HG10009872 vs. ExPASy TrEMBL
Match:
A0A6J1FM76 (uncharacterized protein LOC111445235 OS=Cucurbita moschata OX=3662 GN=LOC111445235 PE=4 SV=1)
HSP 1 Score: 997.7 bits (2578), Expect = 2.2e-287
Identity = 551/619 (89.01%), Postives = 574/619 (92.73%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
MERSEPTLVPEWLR+TGSVTGG NSNHHF S S HSDVPS SQ RNR SKTTGDFDTSR
Sbjct: 1 MERSEPTLVPEWLRNTGSVTGGGNSNHHFQSPSPHSDVPSQSQPRNRTSKTTGDFDTSRP 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSSFNRGHRDKDREKEKDRLNFGDNWDRDSHDPLGKI 120
AFLDRT+SSNSRRSSSNGS+KHAYSSFNRGHRDKDREKEKDR NFGDNWDRDSHDPLGK+
Sbjct: 61 AFLDRTASSNSRRSSSNGSAKHAYSSFNRGHRDKDREKEKDRFNFGDNWDRDSHDPLGKL 120
Query: 121 LSNRIDKDALRRSHSMVSRKQGERELFHRRGATELKSH-NNSDGILSGTSVGSSIQKAVF 180
L NR+DKDALRRSHSMVSRKQ ELFHRR AT+LK+ N+S+G+ G SVGSSIQKAVF
Sbjct: 121 LPNRVDKDALRRSHSMVSRKQD--ELFHRRVATDLKAGVNSSNGMPPGISVGSSIQKAVF 180
Query: 181 EKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVPSMIGN 240
EKDFPSLGSEEKQGASEIGRVSSPGLSS VQSLPIGNSALIVGGEGWTSALAEVPSMIG+
Sbjct: 181 EKDFPSLGSEEKQGASEIGRVSSPGLSSSVQSLPIGNSALIVGGEGWTSALAEVPSMIGS 240
Query: 241 TTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQ---LSVKTQRLEELAI 300
TTGSSSFQQTVPATSGAGPLS+TAGLNMAEALVQAPSRARAAPQ LSVKTQRLEELAI
Sbjct: 241 TTGSSSFQQTVPATSGAGPLSVTAGLNMAEALVQAPSRARAAPQASELSVKTQRLEELAI 300
Query: 301 KQSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSVHANQSRGGHV 360
KQSRQLIPVTPSMPKA LNSSDKSKPKLASRTGELNV +KGGQP P SVHANQSRGGHV
Sbjct: 301 KQSRQLIPVTPSMPKASALNSSDKSKPKLASRTGELNVTVKGGQPLPSSVHANQSRGGHV 360
Query: 361 KSDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPHAPLRSP 420
KSDAQK SHGKFLVLKP RENG+S AKDVSSPTSN ANSQFALAPSVPHAPLRSP
Sbjct: 361 KSDAQKSSHGKFLVLKPARENGVSPTAKDVSSPTSN-----ANSQFALAPSVPHAPLRSP 420
Query: 421 NNTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAVLSDSCSS 480
NN+NV+SVERK+ASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTS+SSSAVLSDSCSS
Sbjct: 421 NNSNVASVERKMASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSMSSSAVLSDSCSS 480
Query: 481 VKSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTESHVTAES 540
VKSPSIGQS+ELTREEID PASP V+ENG VEN NGDSSEEVR+SCDSGEKTE+HV AES
Sbjct: 481 VKSPSIGQSNELTREEIDTPASPHVLENGVVENTNGDSSEEVRSSCDSGEKTETHVAAES 540
Query: 541 LDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSLKMGRCIQPKIFVPSESH 600
LDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYM+LKPSLKMGR IQPKI VPSESH
Sbjct: 541 LDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMSLKPSLKMGRSIQPKISVPSESH 600
Query: 601 EDSKDGGAGSELSSSDSEA 616
EDSKD GAGSELSSSDSEA
Sbjct: 601 EDSKD-GAGSELSSSDSEA 611
BLAST of HG10009872 vs. TAIR 10
Match:
AT1G36990.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). )
HSP 1 Score: 413.3 bits (1061), Expect = 3.4e-115
Identity = 295/588 (50.17%), Postives = 370/588 (62.93%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLS-QSRNRISKTTGDFDTSR 60
M++ E +L PEWLRS+G +GG +SNH SSSSHSD SL SRNR S++ D D+
Sbjct: 1 MDKGEHSLAPEWLRSSGHASGGGSSNHLLVSSSSHSDSASLQYNSRNRNSRSKSDVDSIH 60
Query: 61 SAFLDRTSSSNSRRSSSNGSSKHAYSS--FNRGHRDKDREKEKDRLNFGDNWDRDSHDPL 120
S FLDR+SS+NSRR SSNGS+KHAYSS FNR RDKDR ++KDR+++ D WD D+ PL
Sbjct: 61 SPFLDRSSSTNSRRGSSNGSAKHAYSSFNFNRSQRDKDRSRDKDRVSYVDPWDLDTSIPL 120
Query: 121 GKILSNRIDKDALRRSHSMVSRKQGE---RELFHRRGATELKSHNNSDGILSGTSVGSSI 180
IL+ R D D LRRSHSMV+RKQGE R L + N +G+LSG S+G+S
Sbjct: 121 RTILTGR-DPDPLRRSHSMVTRKQGEHLSRGLTVGLNNGGSSNSYNGNGLLSGPSIGNSF 180
Query: 181 QKAVFEKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEVP 240
Q+ F+KDFPSLG+EEKQ ++ RVSSPG+SS VQ+LP+GNSALI GGEGWTSALAEVP
Sbjct: 181 QRTGFDKDFPSLGAEEKQNGQDVVRVSSPGISSVVQNLPVGNSALI-GGEGWTSALAEVP 240
Query: 241 SMIGNTTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEEL 300
++I S A S AG L+ +GLNMAEALVQAP+R PQ SVKTQRLE+L
Sbjct: 241 NVIEKACTGSLTSPKANAVS-AGTLTGPSGLNMAEALVQAPARTHTPPQGSVKTQRLEDL 300
Query: 301 AIKQSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGG---QPPPLSVHANQS 360
AIKQSRQLIPV PS PK + LNSSDKSK K RTGE +A QP L +
Sbjct: 301 AIKQSRQLIPVVPSAPKGLSLNSSDKSKTKQVVRTGETCLAPSRNALQQPAVLLGSFQSN 360
Query: 361 RGGHVKSDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQ-FALAPSVPH 420
G +K + K LVLKP RENG+S A K+ SP++N N+ AA+SQ + S
Sbjct: 361 PSGQIKPEK------KLLVLKPARENGVS-AVKESGSPSANTNTRAASSQLMSNTQSTQS 420
Query: 421 APLRSPNNTNVSSVERKIAS-LDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAV 480
AP+RS N S E K AS + SG T+EK+PS +Q QSR+ F++ +K+K + S+S +
Sbjct: 421 APVRSTN----SPKELKGASAFSMISGQTIEKKPSAAQAQSRSAFYSALKQKQTASTS-I 480
Query: 481 LSDSCSSVKSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTE 540
+D SS S S +L + + + P + S EV S T
Sbjct: 481 TTDPVSSSTSASSSVEVKLNSSKDLIASDP--------SSSQATSGVEVTDSVQVASHTS 540
Query: 541 SHVTAESLDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKP 578
++ DEEEA FLRSLGW EN GE E LTEEEI+SF +Y L+P
Sbjct: 541 GFEATDTPDEEEAQFLRSLGWVENNGE-EYLTEEEIDSFLEQYKELRP 564
BLAST of HG10009872 vs. TAIR 10
Match:
AT4G08510.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36990.1); Has 888 Blast hits to 321 proteins in 121 species: Archae - 0; Bacteria - 120; Metazoa - 86; Fungi - 24; Plants - 79; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). )
HSP 1 Score: 307.0 bits (785), Expect = 3.4e-83
Identity = 247/590 (41.86%), Postives = 332/590 (56.27%), Query Frame = 0
Query: 1 MERSEPTLVPEWLRSTGSVTGGSNSNHHFPSSSSHSDVPSLSQSRNRISKTTGDFDTSRS 60
ME+ EP+LVPEWLRS+G +G +SN S SD SL S+NR +++ D D+ S
Sbjct: 1 MEKREPSLVPEWLRSSGHGSGVGSSN-------SLSD--SLRNSKNRNARSRSDADSVGS 60
Query: 61 AFLDRTSSSNSRRSSSNGSSKHAYSS--FNRGHRDKDREKEKDRLNFGDNWDRDSHDPLG 120
FLDR+SS+N+RR SSNGS+KHAYSS FNR +RDKDR +EKDR+++ D WD DS P G
Sbjct: 61 PFLDRSSSTNTRRGSSNGSTKHAYSSFNFNRSNRDKDRSREKDRMSYMDPWDNDSSMPFG 120
Query: 121 KILSNRIDKDALRRSHSMVSRKQGER-----ELFHRRGATELKSHNNSDGILSGTSVGSS 180
L R ++ LRRSHSM +RKQG + ++ G + N GIL GTS S
Sbjct: 121 TFLIGR-GEEPLRRSHSMTTRKQGNHLAQGFTVGYKNGGN--INTFNGHGILPGTSPVKS 180
Query: 181 IQKAVFEKDFPSLGSEEKQGASEIGRVSSPGLSSPVQSLPIGNSALIVGGEGWTSALAEV 240
++ F KDFP L EE+ G ++ R+SSPG S QSL + N ALI+ GEGWTSALAEV
Sbjct: 181 SKRMGFNKDFPLLRGEERNGGPDVVRISSPGRSPTAQSLSVANPALII-GEGWTSALAEV 240
Query: 241 PSMIGNTTGSSSFQQTVPATSGAGPLSMTAGLNMAEALVQAPSRARAAPQLSVKTQRLEE 300
P++I + G+ S + + +GP A NMAEALVQAP R PQ Q LE+
Sbjct: 241 PNVIEKSGGAESHANVGNSATLSGP----ACRNMAEALVQAPGRTGTPPQ----AQTLED 300
Query: 301 LAIKQSRQLIPVTPSMPKAMVLNSSDKSKPKLASRTGELNVAIKGGQPPPLSV---HANQ 360
AI+QSRQLIPV PS PK V NSSDKSK K R+GE +A SV +
Sbjct: 301 RAIRQSRQLIPVVPSAPKGSVHNSSDKSKTKPMFRSGETGLASSRNTQQQSSVMLGNMQS 360
Query: 361 SRGGHVKSDAQKISHGKFLVLKPVRENGLSLAAKDVSSPTSNANSMAANSQFALAPSVPH 420
+ G +K D K K ++LKP RENG V + S NS A SQ APS
Sbjct: 361 NPGSQIKPDTTK----KLVILKPARENG-------VVAGGSPPNSRVAASQPTTAPSTQF 420
Query: 421 -APLRSPNNTNVSSVERKIASLDLKSGTTLEKRPSLSQVQSRNDFFNLIKKKTSLSSSAV 480
A +RS N + + AS+++ +G EK+ SL+Q QSR+ F++ +K+KT + S
Sbjct: 421 TASVRSTNGPR----DLRGASVNMLAGKAAEKKLSLAQTQSRHAFYSALKQKTCTNISTD 480
Query: 481 LSDSCSSVKSPSIGQSSELTREEIDMPASPRVIENGTVENRNGDSSEEVRASCDSGEKTE 540
S + S + S Q++ P+SP+ E + E V + E+
Sbjct: 481 PSKTSSCILSSVEEQANSSKELVASDPSSPQAAERDEI-------MESVEKVSNVAERIS 540
Query: 541 SHVTAESLDEEEAAFLRSLGWDENCGEDEGLTEEEINSFYREYMNLKPSL 580
+A D +EAAFL+SLGWDEN ++ T EE+ + +++ KPSL
Sbjct: 541 RFESAVRPDPKEAAFLKSLGWDENDSDEYTHTMEEMREWCKKF---KPSL 544
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038907228.1 | 4.4e-306 | 94.15 | mediator of RNA polymerase II transcription subunit 1 isoform X2 [Benincasa hisp... | [more] |
XP_008460470.1 | 4.8e-305 | 93.33 | PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cuc... | [more] |
XP_038907227.1 | 1.8e-304 | 93.69 | mediator of RNA polymerase II transcription subunit 1 isoform X1 [Benincasa hisp... | [more] |
XP_008460469.1 | 2.0e-303 | 92.88 | PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Cuc... | [more] |
XP_011655200.1 | 1.0e-299 | 92.36 | mediator of RNA polymerase II transcription subunit 1 isoform X2 [Cucumis sativu... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CC42 | 2.3e-305 | 93.33 | mediator of RNA polymerase II transcription subunit 1 isoform X2 OS=Cucumis melo... | [more] |
A0A5D3DT29 | 9.8e-304 | 92.88 | Mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo... | [more] |
A0A1S3CDT9 | 9.8e-304 | 92.88 | mediator of RNA polymerase II transcription subunit 1 isoform X1 OS=Cucumis melo... | [more] |
A0A0A0KN63 | 2.1e-298 | 91.91 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387430 PE=4 SV=1 | [more] |
A0A6J1FM76 | 2.2e-287 | 89.01 | uncharacterized protein LOC111445235 OS=Cucurbita moschata OX=3662 GN=LOC1114452... | [more] |
Match Name | E-value | Identity | Description | |
AT1G36990.1 | 3.4e-115 | 50.17 | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXP... | [more] |
AT4G08510.1 | 3.4e-83 | 41.86 | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... | [more] |