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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGGGCGATCAAATTGTGGAGTACGAGGCAATAGTGATTCCTGGAACAATCGAAATAAACATCAGTGTCAAATATGTACCAAGTTTGGGCATCCCGCATGAAGATGCTTCTTTCATTATGCTCCATGGACTAACCTCCTGGTCAAGGTTCTTCCCAAACAATTTTAATTTTGTTCCTAATGGTTCTCCCTTTCATCAGATGAACACAATGGTAGCTACTTCTGACCTGAATATGGATAGTTGTTGGTATCTAGATTCGGGTGCAACAAGTCACCTCACTCACAAGTCACAATATCACTAA mRNA sequence ATGGAGGGCGATCAAATTGTGGAGTACGAGGCAATAGTGATTCCTGGAACAATCGAAATAAACATCAGTGTCAAATATGTACCAAGTTTGGGCATCCCGCATGAAGATGCTTCTTTCATTATGCTCCATGGACTAACCTCCTGGTCAAGGTTCTTCCCAAACAATTTTAATTTTGTTCCTAATGGTTCTCCCTTTCATCAGATGAACACAATGGTAGCTACTTCTGACCTGAATATGGATAGTTGTTGGTATCTAGATTCGGGTGCAACAAGTCACCTCACTCACAAGTCACAATATCACTAA Coding sequence (CDS) ATGGAGGGCGATCAAATTGTGGAGTACGAGGCAATAGTGATTCCTGGAACAATCGAAATAAACATCAGTGTCAAATATGTACCAAGTTTGGGCATCCCGCATGAAGATGCTTCTTTCATTATGCTCCATGGACTAACCTCCTGGTCAAGGTTCTTCCCAAACAATTTTAATTTTGTTCCTAATGGTTCTCCCTTTCATCAGATGAACACAATGGTAGCTACTTCTGACCTGAATATGGATAGTTGTTGGTATCTAGATTCGGGTGCAACAAGTCACCTCACTCACAAGTCACAATATCACTAA Protein sequence MEGDQIVEYEAIVIPGTIEINISVKYVPSLGIPHEDASFIMLHGLTSWSRFFPNNFNFVPNGSPFHQMNTMVATSDLNMDSCWYLDSGATSHLTHKSQYH
Homology
BLAST of HG10009786 vs. ExPASy TrEMBL
Match: A0A5D3D5W5 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001320 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 5.8e-04 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 0 Query: 66 HQMNTMVATSDLNMDSCWYLDSGATSHLTH 96 HQM+ MVAT DLN+DS WY DSGAT+HLTH Sbjct: 40 HQMSAMVATPDLNIDSNWYTDSGATNHLTH 69
BLAST of HG10009786 vs. ExPASy TrEMBL
Match: A0A5A7VFQ6 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00150 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.9e-04 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 0 Query: 66 HQMNTMVATSDLNMDSCWYLDSGATSHLTH 96 HQM+ MVAT DLN+DS WY DSGAT+HLTH Sbjct: 40 HQMSAMVATPDLNIDSNWYPDSGATNHLTH 69
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D5W5 | 5.8e-04 | 76.67 | Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... | [more] |
A0A5A7VFQ6 | 9.9e-04 | 76.67 | Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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