HG10008180 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008180
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ATP synthase epsilon chain, chloroplastic
Location	Chr10: 20524042 .. 20524452 (+)
RNA-Seq Expression	HG10008180
Synteny	HG10008180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATAGGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAAGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

mRNA sequence

ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATAGGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAAGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

Coding sequence (CDS)

ATGACCTTAAATCTTAGTGTCCTGACTCCGAATCGAATTATTTGGGATTCAGAAGTGAAAGAAATCATTTTAGTTACGAATAGTGGCCAAATTGGTGTATTACCAGATCACGCACCTATTGCCACAGCTGTAGATATAGGTATTTTGAAAATAGGCCTTACTCCTAATGACGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAAGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCAAGTTAA

Protein sequence

MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

Homology

[Close]

BLAST of HG10008180 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. NCBI nr
Match: YP_009346490.1 (ATP synthase CF1 epsilon subunit [Cucumis x hytivus] >AOW71100.1 ATP synthase CF1 epsilon subunit [Cucumis x hytivus] >QCY72848.1 AtpE [Cucumis hystrix])

HSP 1 Score: 255.4 bits (651), Expect = 2.8e-64
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANL+KAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLKKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 254.6 bits (649), Expect = 4.8e-64
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI L PNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLNPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. NCBI nr
Match: YP_010131100.1 (ATP synthase CF1 epsilon subunit [Benincasa hispida] >QPZ75747.1 ATP synthase CF1 epsilon subunit [Benincasa hispida] >QSQ72316.1 CF1 subunit epsilon [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLR+AQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLREAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAIN VPS
Sbjct: 121 LRRARTRVEAINAVPS 136

[Close]

BLAST of HG10008180 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 250.4 bits (638), Expect = 9.1e-63
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLP+HAPIATAVDIGIL+I LT NDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPNHAPIATAVDIGILRIRLTANDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+I L  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]

BLAST of HG10008180 vs. ExPASy Swiss-Prot
Match: Q2L911 (ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpE PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+I L  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]

BLAST of HG10008180 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 117/134 (87.31%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TN+GQIGVLP+HAPIATAVDIGIL+I L  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNTGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+AEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]

BLAST of HG10008180 vs. ExPASy Swiss-Prot
Match: Q1KXV3 (ATP synthase epsilon chain, chloroplastic OS=Helianthus annuus OX=4232 GN=atpE PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-57
Identity = 118/134 (88.06%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVLP+HAPIATAVDIGIL+I L  ND WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRL--NDQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+T+LVNDAEK+SDIDPQEAQQTLEIAEA LRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITVLVNDAEKSSDIDPQEAQQTLEIAEAALRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEAIN +
Sbjct: 121 LRRARTRVEAINAI 132

[Close]

BLAST of HG10008180 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. ExPASy TrEMBL
Match: A0A1S4EU14 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo OX=3656 GN=atpE PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKI LTPNDGWL
Sbjct: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIRLTPNDGWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGVPS 137
           LRRARTRVEAINGVPS
Sbjct: 121 LRRARTRVEAINGVPS 136

[Close]

BLAST of HG10008180 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-57
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MTLNLSVLTPNRIIWDSEVKEIILVTNSGQIGVLPDHAPIATAVDIGILKIGLTPNDGWL 60
           MTLNL VLTPNRI+WDSEVKEIIL TNSGQIGVL +HAPIATAVDIGILKI L   + WL
Sbjct: 1   MTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLANHAPIATAVDIGILKIRLA--NQWL 60

Query: 61  TMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLA 120
           TMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+GKRQTIEANLA
Sbjct: 61  TMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLA 120

Query: 121 LRRARTRVEAINGV 135
           LRRARTRVEA+N +
Sbjct: 121 LRRARTRVEALNTI 132

The following BLAST results are available for this feature:

BLAST of HG10008180 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841789.1	1.3e-64	99.26	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ...	[more]
YP_009346490.1	2.8e-64	98.53	ATP synthase CF1 epsilon subunit [Cucumis x hytivus] >AOW71100.1 ATP synthase CF...	[more]
ASY96329.1	4.8e-64	98.53	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]	[more]
YP_010131100.1	1.8e-63	97.79	ATP synthase CF1 epsilon subunit [Benincasa hispida] >QPZ75747.1 ATP synthase CF...	[more]
YP_009752081.1	9.1e-63	97.06	CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo...	[more]

BLAST of HG10008180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZG9	1.7e-67	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
A0ZZ41	1.2e-57	88.81	ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp...	[more]
Q2L911	1.2e-57	88.81	ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum OX=3635 GN=atpE ...	[more]
Q49KZ2	2.7e-57	87.31	ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
Q1KXV3	2.7e-57	88.06	ATP synthase epsilon chain, chloroplastic OS=Helianthus annuus OX=4232 GN=atpE P...	[more]

BLAST of HG10008180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG49	6.1e-65	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=...	[more]
G3ETZ1	6.1e-65	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ...	[more]
A0A1X9Q1L0	6.1e-65	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
A0A249RZA2	6.1e-65	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A1S4EU14	6.1e-65	99.26	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo OX=3656 GN=atpE PE=3 S...	[more]

BLAST of HG10008180 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00470.1	7.9e-57	87.31	ATP synthase epsilon chain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	GENE3D	6.10.140.480		coord: 91..135 e-value: 3.5E-25 score: 89.3
None	No IPR available	PANTHER	PTHR13822:SF10	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 1..132
IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	PFAM	PF02823	ATP-synt_DE_N	coord: 3..83 e-value: 3.0E-23 score: 81.5
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 1..89 e-value: 1.4E-24 score: 87.9
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	SUPERFAMILY	51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 1..84
IPR020547	ATP synthase delta/epsilon subunit, C-terminal domain	PFAM	PF00401	ATP-synt_DE	coord: 88..131 e-value: 2.3E-7 score: 30.9
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	TIGRFAM	TIGR01216	TIGR01216	coord: 2..132 e-value: 2.3E-40 score: 135.6
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..132
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	HAMAP	MF_00530	ATP_synth_epsil_bac	coord: 1..130 score: 23.462793
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	CDD	cd12152	F1-ATPase_delta	coord: 3..125 e-value: 9.49812E-40 score: 127.628

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008180.1	HG10008180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism