HG10008170 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008170
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein sumv-1 like
Location	Chr10: 20475418 .. 20475678 (-)
RNA-Seq Expression	HG10008170
Synteny	HG10008170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGATCACAGCAAGTTAATGCCGCCGCTGATGGAATGAAGGGTCCATCTCCGGCTCAGCACAGCACCGAGGTTCTTCACCAGCGCAAGAAACTCCCTGTTTGTCCGATGAGAATGGCGATCGGCGGTTTTGCCATCGCCGCCACACTAGGTTACTTTGTCCTCTACACGAAGAAGAAGCCGGAAGCTTCCGCTCTTGATGTCGCGAAAGTTACCGCCGGTATCTCTACTCCGGAGAATACCCGTCCTCGCATGTAG

mRNA sequence

ATGGCAGGATCACAGCAAGTTAATGCCGCCGCTGATGGAATGAAGGGTCCATCTCCGGCTCAGCACAGCACCGAGGTTCTTCACCAGCGCAAGAAACTCCCTGTTTGTCCGATGAGAATGGCGATCGGCGGTTTTGCCATCGCCGCCACACTAGGTTACTTTGTCCTCTACACGAAGAAGAAGCCGGAAGCTTCCGCTCTTGATGTCGCGAAAGTTACCGCCGGTATCTCTACTCCGGAGAATACCCGTCCTCGCATGTAG

Coding sequence (CDS)

ATGGCAGGATCACAGCAAGTTAATGCCGCCGCTGATGGAATGAAGGGTCCATCTCCGGCTCAGCACAGCACCGAGGTTCTTCACCAGCGCAAGAAACTCCCTGTTTGTCCGATGAGAATGGCGATCGGCGGTTTTGCCATCGCCGCCACACTAGGTTACTTTGTCCTCTACACGAAGAAGAAGCCGGAAGCTTCCGCTCTTGATGTCGCGAAAGTTACCGCCGGTATCTCTACTCCGGAGAATACCCGTCCTCGCATGTAG

Protein sequence

MAGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKKKPEASALDVAKVTAGISTPENTRPRM

Homology

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BLAST of HG10008170 vs. NCBI nr
Match: KAA0035091.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MAGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60
          M GSQQVNA  D MKGPSPAQH+TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTAGISTPENTRPR 86
          KPEASALDVAKVT GISTP+NT PR
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPR 85

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BLAST of HG10008170 vs. NCBI nr
Match: XP_022134574.1 (uncharacterized protein LOC111006810 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   MAGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60
           MAGSQQ+N       GPSPAQH+TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL TKK
Sbjct: 66  MAGSQQMN-------GPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKK 125

Query: 61  KPEASALDVAKVTAGISTPENTRPR 86
           KPEASALDVAKVTAG++TPENTRPR
Sbjct: 126 KPEASALDVAKVTAGVATPENTRPR 143

[Close]

BLAST of HG10008170 vs. NCBI nr
Match: KAE8126076.1 (hypothetical protein FH972_020822 [Carpinus fangiana])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MAGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTK 60
          MAG QQV A  A+ MKGPSP QHSTEVLHQR+KLP CPMRMAIGGFAI A LGY VLY+K
Sbjct: 1  MAGPQQVKAVGAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSK 60

Query: 61 KKPEASALDVAKVTAGISTPENTRPR 86
          KKPEASA DVAKV  G+S PENT PR
Sbjct: 61 KKPEASAADVAKVVVGVSHPENTHPR 86

[Close]

BLAST of HG10008170 vs. NCBI nr
Match: PQP98417.1 (hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MAGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYT 60
          MAG QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LYT
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYT 60

Query: 61 KKKPEASALDVAKVTAGISTPENTRPR 86
          KKKPEASALDVAKV  G S PENT PR
Sbjct: 61 KKKPEASALDVAKVATGFSNPENTHPR 87

[Close]

BLAST of HG10008170 vs. NCBI nr
Match: PQP99204.1 (hypothetical protein Pyn_32198 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MAGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYT 60
          MAG QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LYT
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYT 60

Query: 61 KKKPEASALDVAKVTAGISTPENTRPR 86
          KKKPEASALDVAKV  G S PENT PR
Sbjct: 61 KKKPEASALDVAKVVTGFSHPENTHPR 87

[Close]

BLAST of HG10008170 vs. ExPASy TrEMBL
Match: A0A5D3BA37 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00570 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.1e-35
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MAGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60
          M GSQQVNA  D MKGPSPAQH+TEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK
Sbjct: 1  MTGSQQVNATGDRMKGPSPAQHTTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60

Query: 61 KPEASALDVAKVTAGISTPENTRPR 86
          KPEASALDVAKVT GISTP+NT PR
Sbjct: 61 KPEASALDVAKVTTGISTPDNTHPR 85

[Close]

BLAST of HG10008170 vs. ExPASy TrEMBL
Match: A0A6J1BZ44 (uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006810 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-29
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   MAGSQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKK 60
           MAGSQQ+N       GPSPAQH+TEVL QRKKLPVCPM+MA+GGF IAATLGYFVL TKK
Sbjct: 66  MAGSQQMN-------GPSPAQHTTEVLSQRKKLPVCPMKMAVGGFVIAATLGYFVLCTKK 125

Query: 61  KPEASALDVAKVTAGISTPENTRPR 86
           KPEASALDVAKVTAG++TPENTRPR
Sbjct: 126 KPEASALDVAKVTAGVATPENTRPR 143

[Close]

BLAST of HG10008170 vs. ExPASy TrEMBL
Match: A0A314Y3C0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_22000 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MAGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYT 60
          MAG QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LYT
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYT 60

Query: 61 KKKPEASALDVAKVTAGISTPENTRPR 86
          KKKPEASALDVAKV  G S PENT PR
Sbjct: 61 KKKPEASALDVAKVATGFSNPENTHPR 87

[Close]

BLAST of HG10008170 vs. ExPASy TrEMBL
Match: A0A5N6RUE0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MAGSQQVNA-AADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTK 60
          MAG QQV A  A+ MKGPSP QHSTEVLHQR+KLP CPMRMAIGGFAI A LGY VLY+K
Sbjct: 1  MAGPQQVKAVGAEAMKGPSPGQHSTEVLHQRRKLPFCPMRMAIGGFAITAALGYLVLYSK 60

Query: 61 KKPEASALDVAKVTAGISTPENTRPR 86
          KKPEASA DVAKV  G+S PENT PR
Sbjct: 61 KKPEASAADVAKVVVGVSHPENTHPR 86

[Close]

BLAST of HG10008170 vs. ExPASy TrEMBL
Match: A0A314XVK0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32198 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MAGSQQVNAA--ADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYT 60
          MAG QQV AA  A GMKGPSPAQHSTEVLHQ  KL  CPMRMA+GGFA+  T+GYF LYT
Sbjct: 1  MAGPQQVKAAAGAQGMKGPSPAQHSTEVLHQTSKLSFCPMRMALGGFAVIVTIGYFTLYT 60

Query: 61 KKKPEASALDVAKVTAGISTPENTRPR 86
          KKKPEASALDVAKV  G S PENT PR
Sbjct: 61 KKKPEASALDVAKVVTGFSHPENTHPR 87

[Close]

BLAST of HG10008170 vs. TAIR 10
Match: AT4G31830.1 (unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-12
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 4  SQQVNAAADGMKGPSPAQHSTEVLHQRKKLPVCPMRMAIGGFAIAATLGYFVLYTKKKPE 63
          S+ V AA        P  +   VLHQR+ LP     MA+ G AI+  + Y V+Y KKKPE
Sbjct: 18 SEGVKAAGVESSKRPPGSNPGGVLHQRRNLPYSYTTMALAGLAISGAIMYTVMYAKKKPE 77

Query: 64 ASALDVAKVTAGISTPENTRPR 86
          A+A DVAK   G + PE+T PR
Sbjct: 78 ATATDVAKAATGTAKPEDTHPR 99

The following BLAST results are available for this feature:

BLAST of HG10008170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035091.1	1.5e-34	90.59	putative transmembrane protein [Cucumis melo var. makuwa] >TYJ95987.1 putative t...	[more]
XP_022134574.1	1.2e-28	81.18	uncharacterized protein LOC111006810 [Momordica charantia]	[more]
KAE8126076.1	1.3e-27	77.91	hypothetical protein FH972_020822 [Carpinus fangiana]	[more]
PQP98417.1	1.3e-27	77.01	hypothetical protein Pyn_22000 [Prunus yedoensis var. nudiflora]	[more]
PQP99204.1	2.3e-27	77.01	hypothetical protein Pyn_32198 [Prunus yedoensis var. nudiflora]	[more]

BLAST of HG10008170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA37	7.1e-35	90.59	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1BZ44	5.8e-29	81.18	uncharacterized protein LOC111006810 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A314Y3C0	6.5e-28	77.01	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_220...	[more]
A0A5N6RUE0	6.5e-28	77.91	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020822 PE=4 SV=1	[more]
A0A314XVK0	1.1e-27	77.01	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_321...	[more]

BLAST of HG10008170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31830.1	2.2e-12	45.12	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR33919:SF7	BNACNNG59810D PROTEIN	coord: 1..85
None	No IPR available	PANTHER	PTHR33919	OS09G0127700 PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008170.1	HG10008170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane