HG10008160 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008160
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	F-box protein
Location	Chr10: 20409941 .. 20410426 (+)
RNA-Seq Expression	HG10008160
Synteny	HG10008160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGGAATTGGAAGGAAATAAATCCGCTTCTTCATTACGCTTTGACGGGGACTGGTCCAGGATCACACTTCAATTCCTGCAATGGCCTTCTGCTTATTTGTAAAAGAAATTTAAGAAATTTTGACAGCATTTGTGGTGGCGTATTCAATCCGATGACTAATGAGTTTTTCGAAGTTCCTCAAATGTATGAAGATATTTACGCTTACGCCTTTGGTGCAGTTGGATTAGGTTTCATTCCTACGACGAAGCAATATAAATTGTTTAGAGCTACCCTTCTTTCAAATCAACCTGTTTCCATAATGGATGTTTTCACATTTGGAATCAACCCTAAACAAAACCAATGGAGGCATCTTTACTCTCTACCTTACCACATCAAAGGTTGTGGTGTTTATATGAATGGAGTCATCTATTGGTTGGTAAAAGAAGAACATGGTGAGCCTGTCATATATGCTCTTGATGTTGAAACTGAAAAATTGAATTAA

mRNA sequence

ATGGTTCGGAATTGGAAGGAAATAAATCCGCTTCTTCATTACGCTTTGACGGGGACTGGTCCAGGATCACACTTCAATTCCTGCAATGGCCTTCTGCTTATTTGTAAAAGAAATTTAAGAAATTTTGACAGCATTTGTGGTGGCGTATTCAATCCGATGACTAATGAGTTTTTCGAAGTTCCTCAAATGTATGAAGATATTTACGCTTACGCCTTTGGTGCAGTTGGATTAGGTTTCATTCCTACGACGAAGCAATATAAATTGTTTAGAGCTACCCTTCTTTCAAATCAACCTGTTTCCATAATGGATGTTTTCACATTTGGAATCAACCCTAAACAAAACCAATGGAGGCATCTTTACTCTCTACCTTACCACATCAAAGGTTGTGGTGTTTATATGAATGGAGTCATCTATTGGTTGGTAAAAGAAGAACATGGTGAGCCTGTCATATATGCTCTTGATGTTGAAACTGAAAAATTGAATTAA

Coding sequence (CDS)

ATGGTTCGGAATTGGAAGGAAATAAATCCGCTTCTTCATTACGCTTTGACGGGGACTGGTCCAGGATCACACTTCAATTCCTGCAATGGCCTTCTGCTTATTTGTAAAAGAAATTTAAGAAATTTTGACAGCATTTGTGGTGGCGTATTCAATCCGATGACTAATGAGTTTTTCGAAGTTCCTCAAATGTATGAAGATATTTACGCTTACGCCTTTGGTGCAGTTGGATTAGGTTTCATTCCTACGACGAAGCAATATAAATTGTTTAGAGCTACCCTTCTTTCAAATCAACCTGTTTCCATAATGGATGTTTTCACATTTGGAATCAACCCTAAACAAAACCAATGGAGGCATCTTTACTCTCTACCTTACCACATCAAAGGTTGTGGTGTTTATATGAATGGAGTCATCTATTGGTTGGTAAAAGAAGAACATGGTGAGCCTGTCATATATGCTCTTGATGTTGAAACTGAAAAATTGAATTAA

Protein sequence

MVRNWKEINPLLHYALTGTGPGSHFNSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRATLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVKEEHGEPVIYALDVETEKLN

Homology

[Close]

BLAST of HG10008160 vs. NCBI nr
Match: XP_031742179.1 (F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 28  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYK 87
           CNGLL +CK  L   +++C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYK
Sbjct: 118 CNGLLFVCKSKL---NTMCHGIFNPTTNEFYHVPEVFYDIYHF-----GLGYIPSTKQYK 177

Query: 88  LFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVKEEH 147
           LFR   +    +P++I+DVF FG    +NQWR L+SLPY I+G G+YM+GVIY+LVK ++
Sbjct: 178 LFRLAHSKTQQEPITIIDVFHFG----RNQWRQLHSLPYIIEGGGIYMDGVIYFLVKVKN 237

Query: 148 --GEPVIYALDVETEKL 161
              +  IYALDVETE++
Sbjct: 238 KPNDYAIYALDVETEEI 242

[Close]

BLAST of HG10008160 vs. NCBI nr
Match: KAE8652959.1 (hypothetical protein Csa_017750 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-30
Identity = 72/137 (52.55%), Postives = 100/137 (72.99%), Query Frame = 0


Query: 28  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYK 87
           CNGLL +CK  L   +++C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYK
Sbjct: 121 CNGLLFVCKSKL---NTMCHGIFNPTTNEFYHVPEVFYDIYHF-----GLGYIPSTKQYK 180

Query: 88  LFRA--TLLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVKEEH 147
           LFR   +    +P++I+DVF FG    +NQWR L+SLPY I+G G+YM+GVIY+LVK ++
Sbjct: 181 LFRLAHSKTQQEPITIIDVFHFG----RNQWRQLHSLPYIIEGGGIYMDGVIYFLVKVKN 240

Query: 148 --GEPVIYALDVETEKL 161
              +  IYALDVETE++
Sbjct: 241 KPNDYAIYALDVETEEI 245

[Close]

BLAST of HG10008160 vs. NCBI nr
Match: XP_038879760.1 (uncharacterized protein LOC120071509 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 3.0e-28
Identity = 80/145 (55.17%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 27  SCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQY 86
           SCNGLLLI K     F   C G+FNPMTNEFF VP+   D   Y +   G GFIPTTK Y
Sbjct: 114 SCNGLLLISK---STFYCSCMGIFNPMTNEFFRVPRDNFDANKYVY---GFGFIPTTKHY 173

Query: 87  KLFRATLLSNQP--VSIMDVFTF---GINP----KQNQWRHLYSLPYHIKGCGVYMNGVI 146
           KLFR T + ++P   S M+V TF   GINP     QNQWRHLYS+P  I   G Y NG+I
Sbjct: 174 KLFRIT-IEDEPSYSSRMEVLTFGRGGINPNPKQSQNQWRHLYSIPSDICCKGAYFNGII 233

Query: 147 YWL--VKEEHGEPVIYALDVETEKL 161
           YWL   K+E  E VIY LDVE+EK+
Sbjct: 234 YWLGREKDEQNEYVIYTLDVESEKI 251

[Close]

BLAST of HG10008160 vs. NCBI nr
Match: XP_031742187.1 (F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-28
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 28  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYK 87
           CNGLL +CK  L   +++C G+FNP TNEF  VP+++ DIY +     GLG+IP+TK+YK
Sbjct: 117 CNGLLFVCKSKL---NTVCHGIFNPTTNEFHHVPKIFCDIYHF-----GLGYIPSTKEYK 176

Query: 88  LFRAT------------LLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNG 147
           LFRAT             +  +P++I+DVF FG    +N+WR L+SLPY I   G+YM+G
Sbjct: 177 LFRATRSDLIMCRTQQESIRQRPITIIDVFDFG----RNKWRQLHSLPYLIDDGGIYMDG 236

Query: 148 VIYWL--VKEEHGEPVIYALDVETEKL 161
           V+Y++  VK +  +  IYALDVETEK+
Sbjct: 237 VVYFVGKVKNKPNDYAIYALDVETEKI 251

[Close]

BLAST of HG10008160 vs. NCBI nr
Match: KAE8652961.1 (hypothetical protein Csa_017749 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-28
Identity = 70/147 (47.62%), Postives = 98/147 (66.67%), Query Frame = 0


Query: 28  CNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYK 87
           CNGLL +CK  L   +++C G+FNP TNEF  VP+++ DIY +     GLG+IP+TK+YK
Sbjct: 120 CNGLLFVCKSKL---NTVCHGIFNPTTNEFHHVPKIFCDIYHF-----GLGYIPSTKEYK 179

Query: 88  LFRAT------------LLSNQPVSIMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNG 147
           LFRAT             +  +P++I+DVF FG    +N+WR L+SLPY I   G+YM+G
Sbjct: 180 LFRATRSDLIMCRTQQESIRQRPITIIDVFDFG----RNKWRQLHSLPYLIDDGGIYMDG 239

Query: 148 VIYWL--VKEEHGEPVIYALDVETEKL 161
           V+Y++  VK +  +  IYALDVETEK+
Sbjct: 240 VVYFVGKVKNKPNDYAIYALDVETEKI 254

[Close]

BLAST of HG10008160 vs. ExPASy TrEMBL
Match: A0A0A0LSE0 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.6e-27
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 26  NSCNGLLLICKRNL--RNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTT 85
           NSCNGLLLI K  L       +  G+FNPMTNEFF+VP  +++I  Y +   G GFIP T
Sbjct: 114 NSCNGLLLIYKLPLCFPGEFLLRVGIFNPMTNEFFQVP--HDEIVEYHY---GFGFIPAT 173

Query: 86  KQYKLFRATLLSN------QPVSIMDVFTFG----INPKQNQWRHLYSLPYHIKGCGVYM 145
           KQYKLFR     N        VS +DV TFG    I+PKQ+QWR LYSLP  ++  G ++
Sbjct: 174 KQYKLFRVNFPLNVRPEEPNSVSHLDVLTFGRSEIIDPKQSQWRRLYSLPGGVENHGAHV 233

Query: 146 NGVIYWLVK-EEHGEPVIYALDVETEKL 161
           NGVIYWL + +E  E V+Y LDVETEK+
Sbjct: 234 NGVIYWLGEGKEQNEYVVYTLDVETEKI 256

[Close]

BLAST of HG10008160 vs. ExPASy TrEMBL
Match: A0A5A7T7C6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 72/141 (51.06%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 26  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQ 85
           NSCNGLL ICK     FDS+C G+ NPMTNEF E+PQ   ++  +   ++G GF P TKQ
Sbjct: 49  NSCNGLLYICK---FTFDSLCEGILNPMTNEFMEIPQPEIELDVH---SIGFGFSPRTKQ 108

Query: 86  YKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLV 145
           YKLFR    +L N      IM++FTF    K  QWRH   LP+ +   G Y+NGVIYW+ 
Sbjct: 109 YKLFRTEPEVLENLKKCHYIMEIFTFDNGYK--QWRHFERLPFVVFHHGQYLNGVIYWIG 168

Query: 146 K--EEHGEPVIYALDVETEKL 161
           K  E+ GE VIYALDV+TE++
Sbjct: 169 KKLEKEGEAVIYALDVDTEQM 181

[Close]

BLAST of HG10008160 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 72/141 (51.06%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 26  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQ 85
           NSCNGLL ICK     FDS+C G+ NPMTNEF E+PQ   ++  +   ++G GF P TKQ
Sbjct: 116 NSCNGLLYICK---FTFDSLCEGILNPMTNEFMEIPQPEIELDVH---SIGFGFSPRTKQ 175

Query: 86  YKLFRA--TLLSNQPVS--IMDVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLV 145
           YKLFR    +L N      IM++FTF    K  QWRH   LP+ +   G Y+NGVIYW+ 
Sbjct: 176 YKLFRTEPEVLENLKKCHYIMEIFTFDNGYK--QWRHFERLPFVVFHHGQYLNGVIYWIG 235

Query: 146 K--EEHGEPVIYALDVETEKL 161
           K  E+ GE VIYALDV+TE++
Sbjct: 236 KKLEKEGEAVIYALDVDTEQM 248

[Close]

BLAST of HG10008160 vs. ExPASy TrEMBL
Match: A0A0A0LYU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 45  ICGGVFNPMTNEFFEVPQMYEDIYAYAFGAVGLGFIPTTKQYKLFRA--TLLSNQPVSIM 104
           +C G+FNP TNEF+ VP+++ DIY +     GLG+IP+TKQYKLFR   +    +P++I+
Sbjct: 1   MCHGIFNPTTNEFYHVPEVFYDIYHF-----GLGYIPSTKQYKLFRLAHSKTQQEPITII 60

Query: 105 DVFTFGINPKQNQWRHLYSLPYHIKGCGVYMNGVIYWLVKEEH--GEPVIYALDVETEKL 161
           DVF FG    +NQWR L+SLPY I   G+YM+GVIY+LVK ++   +  IYALDVETE++
Sbjct: 61  DVFHFG----RNQWRQLHSLPYLIDDGGIYMDGVIYFLVKVKNKPNDYAIYALDVETEEI 111

[Close]

BLAST of HG10008160 vs. ExPASy TrEMBL
Match: A0A5A7TE00 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 72/147 (48.98%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 26  NSCNGLLLICKRNLRNFDSICGGVFNPMTNEFFEVP--QMYEDIYAYAFGAVGLGFIPTT 85
           NSCNGL+ ICK     F + C G+FNPMTNEFF++P  ++  DIY+Y      LGF PTT
Sbjct: 114 NSCNGLVFICK---CAFFTRCDGIFNPMTNEFFQIPRGELDGDIYSYE-----LGFSPTT 173

Query: 86  KQYKLFRATLL------SNQPVSIMDVFTF----GINPKQNQWRHLYSLPYHIKGCGVYM 145
           KQYKLFR T        ++   SIMDV TF      N   +QWR L+SLP  I   G Y+
Sbjct: 174 KQYKLFRVTESFFLDGDADNNSSIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHN-GAYL 233

Query: 146 NGVIYWL--VKEEHGEPVIYALDVETE 159
           NGVIYW+   +++  E +IYA++VETE
Sbjct: 234 NGVIYWIGTKEDKENEYIIYAVNVETE 251

The following BLAST results are available for this feature:

BLAST of HG10008160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742179.1	2.4e-30	52.55	F-box protein At3g07870-like [Cucumis sativus]	[more]
KAE8652959.1	2.4e-30	52.55	hypothetical protein Csa_017750 [Cucumis sativus]	[more]
XP_038879760.1	3.0e-28	55.17	uncharacterized protein LOC120071509 [Benincasa hispida]	[more]
XP_031742187.1	6.6e-28	47.62	F-box protein At3g07870-like [Cucumis sativus]	[more]
KAE8652961.1	6.6e-28	47.62	hypothetical protein Csa_017749 [Cucumis sativus]	[more]

BLAST of HG10008160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSE0	4.6e-27	52.03	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G011590 PE=4 ...	[more]
A0A5A7T7C6	1.3e-26	51.06	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850...	[more]
A0A1S3CB99	1.3e-26	51.06	F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1	[more]
A0A0A0LYU1	3.3e-25	52.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1	[more]
A0A5A7TE00	1.6e-24	48.98	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130...	[more]

BLAST of HG10008160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017451	F-box associated interaction domain	TIGRFAM	TIGR01640	TIGR01640	coord: 26..161 e-value: 3.6E-16 score: 57.2
None	No IPR available	PANTHER	PTHR47993:SF20	F-BOX FAMILY PROTEIN	coord: 24..160
None	No IPR available	PANTHER	PTHR47993	OS09G0372900 PROTEIN-RELATED	coord: 24..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008160.1	HG10008160.1	mRNA