HG10008127 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008127
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 20078575 .. 20079026 (+)
RNA-Seq ExpressionHG10008127
SyntenyHG10008127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCCATCAAACCAGACCACTTTCAACGCCTTATTCACCTCTAAACCAGCAACAAGATGACCTTCAAGACATCGACGAGTCTTATTCCTCAATGGGTGTGGCTGTTTTCGGCTGTTCGGGTTCGGATTCAATCGGAATGGGAAATACGAAGGTAGAAATCTTCTGCAACAGAAACAGGGGAAGGAAGAGGAGTTATGGATGGTGAGGAAATTGAAGAAGTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCGAAATGGAAGAATTTCATTAGAAAAATGGGTGGATATTTGAAAGGGAAGAAACAGAGGAATAGATTTCAGTATGACCCAGAAAGCTATGCTCTGAATTTCGATGGCGGTTTTGATGGAGAAGAAGATGATCATCATCCGCCAATTGGGTTTTCTACGAGGTTTGCTGTGCCTTTGGCTTCAAGGGAACAACATTGA

mRNA sequence

ATGGCGGCCCATCAAACCAGACCACTTTCAACGCCTTATTCACCTCTAAACCAGCAACAAGATGACCTTCAAGACATCGACGAGTCTTATTCCTCAATGGGTGTGGCTGTTTTCGGCTGTTCGGGTTCGGATTCAATCGGAATGGGAAATACGAAGTATGACCCAGAAAGCTATGCTCTGAATTTCGATGGCGGTTTTGATGGAGAAGAAGATGATCATCATCCGCCAATTGGGTTTTCTACGAGGTTTGCTGTGCCTTTGGCTTCAAGGGAACAACATTGA

Coding sequence (CDS)

ATGGCGGCCCATCAAACCAGACCACTTTCAACGCCTTATTCACCTCTAAACCAGCAACAAGATGACCTTCAAGACATCGACGAGTCTTATTCCTCAATGGGTGTGGCTGTTTTCGGCTGTTCGGGTTCGGATTCAATCGGAATGGGAAATACGAAGTATGACCCAGAAAGCTATGCTCTGAATTTCGATGGCGGTTTTGATGGAGAAGAAGATGATCATCATCCGCCAATTGGGTTTTCTACGAGGTTTGCTGTGCCTTTGGCTTCAAGGGAACAACATTGA

Protein sequence

MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGNTKYDPESYALNFDGGFDGEEDDHHPPIGFSTRFAVPLASREQH
Homology
BLAST of HG10008127 vs. NCBI nr
Match: XP_038876901.1 (uncharacterized protein LOC120069255 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23
Identity = 69/150 (46.00%), Postives = 75/150 (50.00%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN---------- 60
           MA HQTRP STPYSPLN+QQDDLQD+DE+  S G   F   G      GN          
Sbjct: 1   MATHQTRPPSTPYSPLNEQQDDLQDVDEAVPSNGCGCFRLFGFGFNRNGNYEPRNLLQQK 60

Query: 61  -----------------------------------------------TKYDPESYALNFD 94
                                                           +YDPESYALNFD
Sbjct: 61  QGREEESWMVRKLKKMKEVSEMVAGPKWKNFVRKMGGYLKGKKQRNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. NCBI nr
Match: XP_011648475.1 (uncharacterized protein LOC105434480 [Cucumis sativus] >KGN65215.1 hypothetical protein Csa_019625 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 69/148 (46.62%), Postives = 75/148 (50.68%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAV-----FGCSGSDSIGMGNT---- 60
           MA HQTRP STPYSPL  QQDDLQDID+S SS G        FG + + +   GN     
Sbjct: 1   MATHQTRPPSTPYSPLTDQQDDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGGNLLQQK 60

Query: 61  ------------------------------------------------KYDPESYALNFD 92
                                                           +YDPESYALNFD
Sbjct: 61  QGREEESWMVKRLKKVREVSEMVAGPKWKNFIRKMGGYLKGKKERNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. NCBI nr
Match: XP_008443900.1 (PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo] >KAA0050037.1 uncharacterized protein E6C27_scaffold675G00120 [Cucumis melo var. makuwa] >TYK03641.1 uncharacterized protein E5676_scaffold1369G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-21
Identity = 71/149 (47.65%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLN-QQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN--------- 60
           MA+HQTRP STPYSPLN QQQDDLQDID+S SS G   F   G  S    N         
Sbjct: 1   MASHQTRPPSTPYSPLNDQQQDDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGANLLQQ 60

Query: 61  ------------------------------------------------TKYDPESYALNF 92
                                                            +YDPESYALNF
Sbjct: 61  KQGREEESWMVKKLKKVKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNF 120

BLAST of HG10008127 vs. NCBI nr
Match: XP_023003195.1 (uncharacterized protein LOC111496880 [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 61/150 (40.67%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN---------- 60
           MA HQTRP  TPYSPLN++Q+ L D DE+  S G A F   G      GN          
Sbjct: 1   MATHQTRPPPTPYSPLNEEQEHLHDTDEAVPSNGCACFQLFGFGFNRNGNYEEGNLLQQQ 60

Query: 61  -----------------------------------------------TKYDPESYALNFD 94
                                                           +YDPESYALNFD
Sbjct: 61  RGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGRKQRNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. NCBI nr
Match: KAG6587852.1 (hypothetical protein SDJN03_16417, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 60/150 (40.00%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN---------- 60
           MA HQTRP  TPYSPLN++Q+ L D DE+  S G + F   G      GN          
Sbjct: 1   MATHQTRPPPTPYSPLNEEQEHLHDTDEAVPSNGCSCFQLFGFGFNRNGNYEEGNLLQQT 60

Query: 61  -----------------------------------------------TKYDPESYALNFD 94
                                                           +YDPESYALNFD
Sbjct: 61  RGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. ExPASy TrEMBL
Match: A0A0A0LTG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265630 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 69/148 (46.62%), Postives = 75/148 (50.68%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAV-----FGCSGSDSIGMGNT---- 60
           MA HQTRP STPYSPL  QQDDLQDID+S SS G        FG + + +   GN     
Sbjct: 1   MATHQTRPPSTPYSPLTDQQDDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGGNLLQQK 60

Query: 61  ------------------------------------------------KYDPESYALNFD 92
                                                           +YDPESYALNFD
Sbjct: 61  QGREEESWMVKRLKKVREVSEMVAGPKWKNFIRKMGGYLKGKKERNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. ExPASy TrEMBL
Match: A0A5A7U6Q0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00700 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.5e-22
Identity = 71/149 (47.65%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLN-QQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN--------- 60
           MA+HQTRP STPYSPLN QQQDDLQDID+S SS G   F   G  S    N         
Sbjct: 1   MASHQTRPPSTPYSPLNDQQQDDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGANLLQQ 60

Query: 61  ------------------------------------------------TKYDPESYALNF 92
                                                            +YDPESYALNF
Sbjct: 61  KQGREEESWMVKKLKKVKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNF 120

BLAST of HG10008127 vs. ExPASy TrEMBL
Match: A0A1S3B8N4 (uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.5e-22
Identity = 71/149 (47.65%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLN-QQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN--------- 60
           MA+HQTRP STPYSPLN QQQDDLQDID+S SS G   F   G  S    N         
Sbjct: 1   MASHQTRPPSTPYSPLNDQQQDDLQDIDDSISSNGCGCFQLFGFGSNRNRNYEGANLLQQ 60

Query: 61  ------------------------------------------------TKYDPESYALNF 92
                                                            +YDPESYALNF
Sbjct: 61  KQGREEESWMVKKLKKVKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNF 120

BLAST of HG10008127 vs. ExPASy TrEMBL
Match: A0A6J1KR34 (uncharacterized protein LOC111496880 OS=Cucurbita maxima OX=3661 GN=LOC111496880 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 61/150 (40.67%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN---------- 60
           MA HQTRP  TPYSPLN++Q+ L D DE+  S G A F   G      GN          
Sbjct: 1   MATHQTRPPPTPYSPLNEEQEHLHDTDEAVPSNGCACFQLFGFGFNRNGNYEEGNLLQQQ 60

Query: 61  -----------------------------------------------TKYDPESYALNFD 94
                                                           +YDPESYALNFD
Sbjct: 61  RGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGRKQRNRFQYDPESYALNFD 120

BLAST of HG10008127 vs. ExPASy TrEMBL
Match: A0A6J1EGU0 (uncharacterized protein LOC111433973 OS=Cucurbita moschata OX=3662 GN=LOC111433973 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 60/150 (40.00%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 1   MAAHQTRPLSTPYSPLNQQQDDLQDIDESYSSMGVAVFGCSGSDSIGMGN---------- 60
           MA HQTRP  TPYSPLN++Q+ L D DE+  S G + F   G      GN          
Sbjct: 1   MATHQTRPPPTPYSPLNEEQEHLHDTDEAIPSNGCSCFQLFGFGFNRNGNYEEGNLLQQQ 60

Query: 61  -----------------------------------------------TKYDPESYALNFD 94
                                                           +YDPESYALNFD
Sbjct: 61  RGREEEFWMVKKLKKLKEVSEMVAGPKWKNFIRKMGGYLKGKKQRNRFQYDPESYALNFD 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876901.16.3e-2346.00uncharacterized protein LOC120069255 [Benincasa hispida][more]
XP_011648475.11.2e-2146.62uncharacterized protein LOC105434480 [Cucumis sativus] >KGN65215.1 hypothetical ... [more]
XP_008443900.11.5e-2147.65PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo] >KAA0050037.1 unc... [more]
XP_023003195.11.3e-1540.67uncharacterized protein LOC111496880 [Cucurbita maxima][more]
KAG6587852.13.7e-1540.00hypothetical protein SDJN03_16417, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTG05.7e-2246.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265630 PE=4 SV=1[more]
A0A5A7U6Q07.5e-2247.65Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B8N47.5e-2247.65uncharacterized protein LOC103487383 OS=Cucumis melo OX=3656 GN=LOC103487383 PE=... [more]
A0A6J1KR346.1e-1640.67uncharacterized protein LOC111496880 OS=Cucurbita maxima OX=3661 GN=LOC111496880... [more]
A0A6J1EGU01.8e-1540.00uncharacterized protein LOC111433973 OS=Cucurbita moschata OX=3662 GN=LOC1114339... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008127.1HG10008127.1mRNA