HG10008116 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008116
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic
Location	Chr10: 19993963 .. 19995498 (+)
RNA-Seq Expression	HG10008116
Synteny	HG10008116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTTCCGCCATTAAACCTTCACTTCCACTTTCTCCTTCTTTCAATTACCCATCTCTCTCACCCATTTCATGGAGTTTTTGCAGACCCATTTCAGATTCTTCCCCTTCTTGCCCTATTTCCATCTCCTCTCGGCATCGACGACAAGTATCTGCCTCGGTTGCCTTCAATCCTTCCGGAAATTTCGACCTCTCTTTGCAAGATGATGATGATGGTAACTCCTCAATCTATTCCTGCTTTAGTTTCTGAATTTGTTCTGTACCCATTTCGATTTGTTCATTCCAGAATTAGTTGAAATCAGAATTGTGATGATTGAGGAAAGGGGAAGGGGGGAATTTTCTTTTCAATCCATGAGCATTGGATGAATTGCGTAGGTCGATTATTTGGTTGTTTGAATGCTTTGAATTTATTTTCTGTGGCTTCCCTGTTGATATTTATGTTATTTACGTTTTTTTGCCTAAGAGTTTAGACGGGTGCGCGTTAACACATGAACCACGTAAATCTCTATATCAATTTCTCTACTCTTTACCTTTTCTGTGTTGCTTTGATTGTCGATTTCTTAACATTTGGATTGGTAAATGATCAGTCATTTAAAGAGAATTGCCCTGTTCTTTGATGATATTCAAATTCATTGCTGTCTTTCGGAGAAAAGAAAAGTATAAACTGTTAGGGAAGATTTGACTAACTTTCCCTTGAAATGCTATGGAAACAAAAGAAAAGAAAGAACTATTGTGGTGGTTATGTATATATCTAGAGAGTTCTTGAAATTTTGATGAGTTTTAACTGATTGTTAAGAACAGATTCTCCTAAAGTTGCACCTCCAATGCCACCCACTGAAGGTCGATTCGACGTGGTTATAGACAACGATGCAATTCGTCGTCTAGACTTATCATCATTTCAGAAAACAACTGGAATAATTTCACCTTTAGCTAGTAAGTTTTGGGTTGGTTGATAGGTTTATATCATTGTTTTGAAATTAGTTCTGTGATCCCTGTCCCTGATGAGTTCTCTTTCCTAGTATTGTTACAGCTGAGCCAAAACAATTCCTTGAAAGTACAATTGGTTTTACCATTAATTATACCCGAGAAGATCCTTACGATCGACGTGAATTATCTGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCTATCTATCCATGGTTACCTGTTCTGTTGGACTGGAGAGCCGGAGAGCTTGCTCGATATGCAGCGATGCTCGTCCCTCACCAGGTGATGCTATTGCTAGTGATGAAATGCTATGAAAATGTTGATATTAAGGAGTGTGAGAGACTTATTTTTGGGATCATTTTGGTTGCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAAGCTTTGGAGTTGTTTGTGATGAAGAAAGTTTTTATTGTGTATTCATGGTTGAAGGAACATGAGATTCCAAAGCCAAGATTGAAGACAGCTAATATGGCTAGGATGCTTGGGTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCTCCACCATGA

mRNA sequence

ATGTCCACTTCCGCCATTAAACCTTCACTTCCACTTTCTCCTTCTTTCAATTACCCATCTCTCTCACCCATTTCATGGAGTTTTTGCAGACCCATTTCAGATTCTTCCCCTTCTTGCCCTATTTCCATCTCCTCTCGGCATCGACGACAAGTATCTGCCTCGGTTGCCTTCAATCCTTCCGGAAATTTCGACCTCTCTTTGCAAGATGATGATGATGATTCTCCTAAAGTTGCACCTCCAATGCCACCCACTGAAGGTCGATTCGACGTGGTTATAGACAACGATGCAATTCGTCGTCTAGACTTATCATCATTTCAGAAAACAACTGGAATAATTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAAAGTACAATTGGTTTTACCATTAATTATACCCGAGAAGATCCTTACGATCGACGTGAATTATCTGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCTATCTATCCATGGTTACCTGTTCTGTTGGACTGGAGAGCCGGAGAGCTTGCTCGATATGCAGCGATGCTCGTCCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAAGCTTTGGAGTTGTTTGTGATGAAGAAAGTTTTTATTGTGTATTCATGGTTGAAGGAACATGAGATTCCAAAGCCAAGATTGAAGACAGCTAATATGGCTAGGATGCTTGGGTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCTCCACCATGA

Coding sequence (CDS)

ATGTCCACTTCCGCCATTAAACCTTCACTTCCACTTTCTCCTTCTTTCAATTACCCATCTCTCTCACCCATTTCATGGAGTTTTTGCAGACCCATTTCAGATTCTTCCCCTTCTTGCCCTATTTCCATCTCCTCTCGGCATCGACGACAAGTATCTGCCTCGGTTGCCTTCAATCCTTCCGGAAATTTCGACCTCTCTTTGCAAGATGATGATGATGATTCTCCTAAAGTTGCACCTCCAATGCCACCCACTGAAGGTCGATTCGACGTGGTTATAGACAACGATGCAATTCGTCGTCTAGACTTATCATCATTTCAGAAAACAACTGGAATAATTTCACCTTTAGCTACTGAGCCAAAACAATTCCTTGAAAGTACAATTGGTTTTACCATTAATTATACCCGAGAAGATCCTTACGATCGACGTGAATTATCTGAATACCCTGACATAAGGCTGTGGTTTGTGAGGCTTGATTCTATCTATCCATGGTTACCTGTTCTGTTGGACTGGAGAGCCGGAGAGCTTGCTCGATATGCAGCGATGCTCGTCCCTCACCAGATAAGTATGAGAATGGGAATTGTGTTCAATCCTGAAGCTTTGGAGTTGTTTGTGATGAAGAAAGTTTTTATTGTGTATTCATGGTTGAAGGAACATGAGATTCCAAAGCCAAGATTGAAGACAGCTAATATGGCTAGGATGCTTGGGTTTGGGATTGGAGATGAACTTTTTGACTTGATAGATCAACATCCAGTTGCTCCACCATGA

Protein sequence

MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPSGNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPKQFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGDELFDLIDQHPVAPP

Homology

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BLAST of HG10008116 vs. NCBI nr
Match: XP_038876902.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Benincasa hispida])

HSP 1 Score: 504.6 bits (1298), Expect = 5.0e-139
Identity = 247/254 (97.24%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MSTSAIKPSLPL PSFN+PS SPISWSFCRPISDSSPS PIS SSRHRRQVSASVAFNPS
Sbjct: 1   MSTSAIKPSLPLPPSFNHPSRSPISWSFCRPISDSSPSFPISTSSRHRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK
Sbjct: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDS+YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           ML+PHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLIPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. NCBI nr
Match: XP_022987841.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-131
Identity = 235/254 (92.52%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST AIKP LPLSPSFN+PS SPISWSFCRPISDSSPSC I  SSR RRQVSASVAFNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPSCSIFSSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           G FDLSLQDD+DDSPKV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSPKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKKHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPV PP
Sbjct: 241 ELFDLIDQHPVVPP 254

[Close]

BLAST of HG10008116 vs. NCBI nr
Match: XP_022921932.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 476.1 bits (1224), Expect = 1.9e-130
Identity = 234/254 (92.13%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST AIKP LPLSPSFN+PS SPISWSFCRPISDSSP C I  SSR RRQVSASVAFNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPFCSIFTSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           G FDLSLQDD+DDS KV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. NCBI nr
Match: XP_011655753.1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucumis sativus] >KGN65205.1 hypothetical protein Csa_020038 [Cucumis sativus])

HSP 1 Score: 475.7 bits (1223), Expect = 2.5e-130
Identity = 233/254 (91.73%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST  IKPS PLSPSFN+PS SPISWSF RPISDSSPS  IS SSRHRRQ+SASV+FNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           GNFDLS QDDDDDS KVAPPMPPTEGRFDVVIDNDAIR LDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDPYDRRELSEYPDIRLWFVRLDS+YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. NCBI nr
Match: KAG6589804.1 (Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 473.0 bits (1216), Expect = 1.6e-129
Identity = 233/254 (91.73%), Postives = 239/254 (94.09%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST AIKP LPLSPSFN+ S SPISWSFCRPISDSSP C I  SSR RRQVSASVAFNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHSSRSPISWSFCRPISDSSPFCSIFTSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           G FDLSLQDD+DDS KV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. ExPASy Swiss-Prot
Match: O82258 (Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR6 PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 6.0e-87
Identity = 166/253 (65.61%), Postives = 197/253 (77.87%), Query Frame = 0


Query: 1   MSTSAIKPSLP-LSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNP 60
           M+T A+   LP L PS  + SL P+      P  +++  C   +  R    V+ SVAFNP
Sbjct: 1   MATKAV--LLPWLIPSPRHVSLFPV---VQLPALETAGWC---VRKRRAEDVAVSVAFNP 60

Query: 61  SGNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISP---LA 120
           SGNFD+S  ++D DS KV PPMPPT GR++VVIDND+I RLDLS FQ+  GI SP     
Sbjct: 61  SGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGV 120

Query: 121 TEPKQFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELA 180
            EPK++L+ TIGFTINY REDP D RELSEYPD+RLWFVRLD++YPWLP+LLDWRAGELA
Sbjct: 121 AEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELA 180

Query: 181 RYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGF 240
           RYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK H +PKPRLKT++MARMLGF
Sbjct: 181 RYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGF 240

Query: 241 GIGDELFDLIDQH 250
           GIGDELFDLID +
Sbjct: 241 GIGDELFDLIDHN 245

[Close]

BLAST of HG10008116 vs. ExPASy TrEMBL
Match: A0A6J1JFH1 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485264 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 235/254 (92.52%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST AIKP LPLSPSFN+PS SPISWSFCRPISDSSPSC I  SSR RRQVSASVAFNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPSCSIFSSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           G FDLSLQDD+DDSPKV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSPKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKKHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPV PP
Sbjct: 241 ELFDLIDQHPVVPP 254

[Close]

BLAST of HG10008116 vs. ExPASy TrEMBL
Match: A0A6J1E1R8 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430041 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 9.2e-131
Identity = 234/254 (92.13%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST AIKP LPLSPSFN+PS SPISWSFCRPISDSSP C I  SSR RRQVSASVAFNPS
Sbjct: 1   MSTPAIKPLLPLSPSFNHPSRSPISWSFCRPISDSSPFCSIFTSSRQRRQVSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           G FDLSLQDD+DDS KV+PPMPPTEGRFDVVIDND IR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GKFDLSLQDDEDDSSKVSPPMPPTEGRFDVVIDNDVIRHLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDP+DRRELSEYPDIRLWFVRLDS YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPHDRRELSEYPDIRLWFVRLDSEYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLKTANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKTANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. ExPASy TrEMBL
Match: A0A0A0LTF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264560 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130
Identity = 233/254 (91.73%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST  IKPS PLSPSFN+PS SPISWSF RPISDSSPS  IS SSRHRRQ+SASV+FNPS
Sbjct: 1   MSTPTIKPSFPLSPSFNHPSRSPISWSFSRPISDSSPSSLISTSSRHRRQLSASVSFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           GNFDLS QDDDDDS KVAPPMPPTEGRFDVVIDNDAIR LDLSSFQ TTGI+SPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSSKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQTTTGIVSPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDPYDRRELSEYPDIRLWFVRLDS+YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 254

[Close]

BLAST of HG10008116 vs. ExPASy TrEMBL
Match: A0A1S3B982 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487393 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.8e-130
Identity = 234/254 (92.13%), Postives = 239/254 (94.09%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           MST  IKP LPLSPSFN+PS SPISWSF RPI   SPS PIS SSRHR Q+SASVAFNPS
Sbjct: 1   MSTPTIKPPLPLSPSFNHPSRSPISWSFSRPI---SPSSPISTSSRHRPQLSASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           GNFDLS QDDDDDSPKVAPPMPPTEGRFDVVIDNDAIR LDLSSFQKTTGIISPLATEPK
Sbjct: 61  GNFDLSFQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRCLDLSSFQKTTGIISPLATEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDPYDRRELSEYPDIRLWFVRLDS+YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLK+H+IPKPRLK ANMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKQHDIPKPRLKAANMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQHPVAPP
Sbjct: 241 ELFDLIDQHPVAPP 251

[Close]

BLAST of HG10008116 vs. ExPASy TrEMBL
Match: A0A6J1C097 (protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007292 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.3e-121
Identity = 218/254 (85.83%), Postives = 228/254 (89.76%), Query Frame = 0


Query: 1   MSTSAIKPSLPLSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNPS 60
           M+T AIKP LPLSPS N PS SP SWSFCRP              RHRRQV+ASVAFNPS
Sbjct: 1   MTTPAIKPLLPLSPSINQPSRSPASWSFCRP-----------TFPRHRRQVAASVAFNPS 60

Query: 61  GNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISPLATEPK 120
           GNF+LSLQDD+DDSPKVAPPMPPT+GRFDVVIDND IRRLDLS FQKTTGIISPL+TEPK
Sbjct: 61  GNFELSLQDDEDDSPKVAPPMPPTDGRFDVVIDNDTIRRLDLSPFQKTTGIISPLSTEPK 120

Query: 121 QFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAA 180
           QFLE TIGFTINYTREDPYDRRELSEYPDIRLWFVRLDS+YPWLPVLLDWRAGELARYAA
Sbjct: 121 QFLERTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSVYPWLPVLLDWRAGELARYAA 180

Query: 181 MLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGD 240
           MLVPHQISMRMGIVFNPEALELFVM KVF VYSWLK+H+IPKPRLKT NMARMLGFGIGD
Sbjct: 181 MLVPHQISMRMGIVFNPEALELFVMNKVFTVYSWLKQHDIPKPRLKTGNMARMLGFGIGD 240

Query: 241 ELFDLIDQHPVAPP 255
           ELFDLIDQ+PVAPP
Sbjct: 241 ELFDLIDQNPVAPP 243

[Close]

BLAST of HG10008116 vs. TAIR 10
Match: AT2G47910.1 (chlororespiratory reduction 6 )

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-88
Identity = 166/253 (65.61%), Postives = 197/253 (77.87%), Query Frame = 0


Query: 1   MSTSAIKPSLP-LSPSFNYPSLSPISWSFCRPISDSSPSCPISISSRHRRQVSASVAFNP 60
           M+T A+   LP L PS  + SL P+      P  +++  C   +  R    V+ SVAFNP
Sbjct: 1   MATKAV--LLPWLIPSPRHVSLFPV---VQLPALETAGWC---VRKRRAEDVAVSVAFNP 60

Query: 61  SGNFDLSLQDDDDDSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISP---LA 120
           SGNFD+S  ++D DS KV PPMPPT GR++VVIDND+I RLDLS FQ+  GI SP     
Sbjct: 61  SGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGV 120

Query: 121 TEPKQFLESTIGFTINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELA 180
            EPK++L+ TIGFTINY REDP D RELSEYPD+RLWFVRLD++YPWLP+LLDWRAGELA
Sbjct: 121 AEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELA 180

Query: 181 RYAAMLVPHQISMRMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGF 240
           RYAAMLVPHQ+S+RMG+VFNPEALELFVM KVF+VY WLK H +PKPRLKT++MARMLGF
Sbjct: 181 RYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGF 240

Query: 241 GIGDELFDLIDQH 250
           GIGDELFDLID +
Sbjct: 241 GIGDELFDLIDHN 245

[Close]

BLAST of HG10008116 vs. TAIR 10
Match: AT2G47910.2 (chlororespiratory reduction 6 )

HSP 1 Score: 294.3 bits (752), Expect = 9.5e-80
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 73  DSPKVAPPMPPTEGRFDVVIDNDAIRRLDLSSFQKTTGIISP---LATEPKQFLESTIGF 132
           DS KV PPMPPT GR++VVIDND+I RLDLS FQ+  GI SP      EPK++L+ TIGF
Sbjct: 18  DSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGVAEPKRYLDRTIGF 77

Query: 133 TINYTREDPYDRRELSEYPDIRLWFVRLDSIYPWLPVLLDWRAGELARYAAMLVPHQISM 192
           TINY REDP D RELSEYPD+RLWFVRLD++YPWLP+LLDWRAGELARYAAMLVPHQ+S+
Sbjct: 78  TINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELARYAAMLVPHQMSL 137

Query: 193 RMGIVFNPEALELFVMKKVFIVYSWLKEHEIPKPRLKTANMARMLGFGIGDELFDLIDQH 250
           RMG+VFNPEALELFVM KVF+VY WLK H +PKPRLKT++MARMLGFGIGDELFDLID +
Sbjct: 138 RMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGFGIGDELFDLIDHN 197

The following BLAST results are available for this feature:

BLAST of HG10008116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876902.1	5.0e-139	97.24	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Benincasa hispida]	[more]
XP_022987841.1	2.2e-131	92.52	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita maxim...	[more]
XP_022921932.1	1.9e-130	92.13	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 [Cucurbita mosch...	[more]
XP_011655753.1	2.5e-130	91.73	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic [Cucumis sativus] >KGN65205...	[more]
KAG6589804.1	1.6e-129	91.73	Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic, partial [Cucurbita argyros...	[more]

BLAST of HG10008116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82258	6.0e-87	65.61	Protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Arabidopsis thaliana OX=...	[more]

BLAST of HG10008116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JFH1	1.1e-131	92.52	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 OS=Cucurbita max...	[more]
A0A6J1E1R8	9.2e-131	92.13	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic isoform X1 OS=Cucurbita mos...	[more]
A0A0A0LTF0	1.2e-130	91.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264560 PE=4 SV=1	[more]
A0A1S3B982	7.8e-130	92.13	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1C097	2.3e-121	85.83	protein CHLORORESPIRATORY REDUCTION 6, chloroplastic OS=Momordica charantia OX=3...	[more]

BLAST of HG10008116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47910.1	4.3e-88	65.61	chlororespiratory reduction 6	[more]
AT2G47910.2	9.5e-80	76.67	chlororespiratory reduction 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014946	Protein chlororespiratory reduction 6	PFAM	PF08847	Crr6	coord: 92..245 e-value: 1.8E-59 score: 199.7
IPR014946	Protein chlororespiratory reduction 6	PANTHER	PTHR35724	PROTEIN CHLORORESPIRATORY REDUCTION 6, CHLOROPLASTIC	coord: 4..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008116.1	HG10008116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010275	NAD(P)H dehydrogenase complex assembly
cellular_component	GO:0009507	chloroplast