HG10008106 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008106
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 19897079 .. 19897402 (+)
RNA-Seq Expression	HG10008106
Synteny	HG10008106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

mRNA sequence

ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Coding sequence (CDS)

ATGGCAGTCAAGTCACCCAACGCATCCACAATGAAGTTAGCACGAGTAATTCTTGTTTGCGTAGCCATTTTAGCACCATCGGCGACAGCACGCACAGTAGCGGTAACGTCCGGTCCAACAGTACAACAAAATCTCTTTTTCTTAAGTTGTGCTCCATTTATTTTGGATGCAGCATTGTGTATGGTCGATGTGATTAAATTTCCAATTGCTCCTCATCCTTTTTGTTGCAAAGCCATTTTTAAGCTCGGTGATTGTGCTCCTGCAATATTCGAAAAGATTCCTCCTGCTGACATGGATATAATTAAGAAGATTTGTGCTTTGTAA

Protein sequence

MAVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL

Homology

[Close]

BLAST of HG10008106 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 72/108 (66.67%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MAVKSPNASTMKLARVILVCVAILAPSAT-ARTVAVTSGPTVQQNLFFLSCAPFILDAAL 60
           MA +S N S MKL  V LVC+AILAPS T A T A    P+V QN  FL CAPFIL+A L
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           C+ DVIKFPIAPHP CCKAI KL DCAP I++KIP  DMD+IKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008106 vs. NCBI nr
Match: KAA0050072.1 (hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK10333.1 hypothetical protein E5676_scaffold367G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-29
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MAVKSPNASTMKLARVILVCVAILAPSATA-RTVAVTS-GPTVQQNLFFLSCAPFILDAA 60
           MAVKS  AS +K A V +V +AILA S TA RTV+ T+  P++ QNL F SCAPFI D  
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICA 107
           LC+VDV KFPI+PHP CCKAIFKL DCAP +F+ IPPADMD+IKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008106 vs. NCBI nr
Match: KAE8653023.1 (hypothetical protein Csa_023561, partial [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 3.0e-29
Identity = 72/107 (67.29%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 4   KSPNASTMKLARVILVCVAILAPSATA-RTV--AVTSGPTVQQNLFFLSCAPFILDAALC 63
           KS  AS MKLA V +V +AILA SATA RTV  + T  P++ Q+L F SC PFILDA LC
Sbjct: 1   KSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDATLC 60

Query: 64  MVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           +VDV KFPIAPHPFCCKAIFKL DCAP +F+ IP ADMD++K ICAL
Sbjct: 61  LVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDVVKNICAL 107

[Close]

BLAST of HG10008106 vs. NCBI nr
Match: KAE8653020.1 (hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypothetical protein Csa_004566, partial [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MAVKSPNASTMKLARVILVCVAILAPSATA-RTV--AVTSGPTVQQNLFFLSCAPFILDA 60
           MAVKS  AS MKLA V +V +AILA SATA RTV  + T  P++ Q+L F SC PFILDA
Sbjct: 1   MAVKSLKASPMKLALVFIVSIAILAASATAGRTVVSSTTLDPSISQDLSFFSCTPFILDA 60

Query: 61  ALCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDI 101
            LC+VDV KFPIAPHPFCCKAIFKL DCAP +F+ IP ADMD+
Sbjct: 61  TLCLVDVFKFPIAPHPFCCKAIFKLNDCAPVVFQTIPSADMDV 103

[Close]

BLAST of HG10008106 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.5e-25
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 11  MKLARVILVCVAILAPSAT-ARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFPI 70
           MKL  V LVC+AILAPS T A T A    P+V QN  FL CAPFIL+A LC+  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           APHP CCKAI KL DCAP I++KIP +DM++IKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008106 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.6e-30
Identity = 72/108 (66.67%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 1   MAVKSPNASTMKLARVILVCVAILAPSAT-ARTVAVTSGPTVQQNLFFLSCAPFILDAAL 60
           MA +S N S MKL  V LVC+AILAPS T A T A    P+V QN  FL CAPFIL+A L
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           C+ DVIKFPIAPHP CCKAI KL DCAP I++KIP  DMD+IKKIC+L
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of HG10008106 vs. ExPASy TrEMBL
Match: A0A5A7U2L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00060 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MAVKSPNASTMKLARVILVCVAILAPSATA-RTVAVTS-GPTVQQNLFFLSCAPFILDAA 60
           MAVKS  AS +K A V +V +AILA S TA RTV+ T+  P++ QNL F SCAPFI D  
Sbjct: 1   MAVKSLKASPIKSASVFIVSIAILAASVTAGRTVSSTTLDPSMSQNLSFFSCAPFIFDVT 60

Query: 61  LCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICA 107
           LC+VDV KFPI+PHP CCKAIFKL DCAP +F+ IPPADMD+IKKICA
Sbjct: 61  LCLVDVFKFPISPHPLCCKAIFKLNDCAPVVFQTIPPADMDVIKKICA 108

[Close]

BLAST of HG10008106 vs. ExPASy TrEMBL
Match: A0A5D3CGK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00080 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 11  MKLARVILVCVAILAPSAT-ARTVAVTSGPTVQQNLFFLSCAPFILDAALCMVDVIKFPI 70
           MKL  V LVC+AILAPS T A T A    P+V QN  FL CAPFIL+A LC+  VIKFPI
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           APHP CCKAI KL DCAP I++KIP +DM++IKK C+L
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

[Close]

BLAST of HG10008106 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.2e-24
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 2   AVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGP---TVQQNLFFLSCAPFILDAA 61
           A KS +AST++LA V LVC+ ILAPS TA T+A    P    + Q+  F +CAPFIL+A 
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  LCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           +CMVDVIK P+APHP CCKAI  L DCAP I++ IP   MD+IKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIP--GMDVIKKICGL 109

[Close]

BLAST of HG10008106 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-24
Identity = 64/109 (58.72%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 2   AVKSPNASTMKLARVILVCVAILAPSATARTVAVTSGP---TVQQNLFFLSCAPFILDAA 61
           A KS +AST++LA V LVC+ ILAPS TA T+A    P    + Q+  F +CAPFIL+A 
Sbjct: 3   AAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEAT 62

Query: 62  LCMVDVIKFPIAPHPFCCKAIFKLGDCAPAIFEKIPPADMDIIKKICAL 108
           +CMVDVIK P+APHP CCKAI  L DCAP I+  IP   MD+IKKIC L
Sbjct: 63  MCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIP--GMDVIKKICGL 109

The following BLAST results are available for this feature:

BLAST of HG10008106 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050069.1	1.8e-29	66.67	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
KAA0050072.1	3.0e-29	66.67	hypothetical protein E6C27_scaffold675G00540 [Cucumis melo var. makuwa] >TYK1033...	[more]
KAE8653023.1	3.0e-29	67.29	hypothetical protein Csa_023561, partial [Cucumis sativus]	[more]
KAE8653020.1	3.7e-27	67.96	hypothetical protein Csa_004576, partial [Cucumis sativus] >KGN65427.2 hypotheti...	[more]
TYK10334.1	3.5e-25	65.31	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]

BLAST of HG10008106 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9A1	8.6e-30	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U2L3	1.5e-29	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGK9	1.7e-25	65.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGL7	3.2e-24	58.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4A7	5.4e-24	58.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of HG10008106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008106.1	HG10008106.1	mRNA