HG10008101 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008101
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 19737298 .. 19737615 (-)
RNA-Seq Expression	HG10008101
Synteny	HG10008101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

mRNA sequence

ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

Coding sequence (CDS)

ATGAAGGCAAAGTCTATGAGCACATCCATAATAAGGTTAGCACTTGTATTCTTAGTCTGCGTAGTCATTTTAGCCCCATCGGTGACAGCCCGCACGATGGCAGAAGCACCAAGTCCATCAGTATTAGAGGATTTATCTTTCTCACACTGCACGCCCTTTATTTTAAAGGCAACAATATGTGTGATAGATGTGATCAAACTTCCAGTTGCTCCACATCCTTCTTGTTGCAAAGCCATTTTTGAGCTCAACGACTGCGCCCCTGAGATTTATCAACATATTCTTGACATGGGTGTGATTAAGAAAATATGTTACATGTGA

Protein sequence

MKAKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKICYM

Homology

[Close]

BLAST of HG10008101 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 3   AKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL---EDLSFSHCTPFILKATI 62
           AKS S S IRLALVFLVC+VILAPSVTA TMAEAPSP ++   +D SFS+C PFIL+AT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           C++DVIKLPVAPHPSCCKAI +LNDCAPEIYQHI  M VIKKIC
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKIC 107

[Close]

BLAST of HG10008101 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 8.9e-34
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 3   AKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL---EDLSFSHCTPFILKATI 62
           AKS S S IRLALVFLVC+VILAPSVTA TMAEAPSP ++   +D SFS+C PFIL+AT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           C++DVIKLPVAPHPSCCKAI +LNDCAPEIY HI  M VIKKIC
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKIC 107

[Close]

BLAST of HG10008101 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 4   KSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVID 63
           + MST I++++L FLV + ILAPS TA T+A APSP  LEDLSFS+CTPFIL AT+CV+ 
Sbjct: 5   RGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCVVS 64

Query: 64  VIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           VIK PVAPHPSCCKAI +LNDC+PE+YQHI  M VIKKIC
Sbjct: 65  VIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of HG10008101 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MKAKSMSTSIIRLALVFLVCVVILAPSVT-ARTMAEAPSPSVLEDLSFSHCTPFILKATI 60
           M A+S++ S ++L LVFLVC+ ILAPS T A T A APSPSV ++  F  C PFIL+AT+
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           CV DVIK P+APHPSCCKAI +LNDCAPEIYQ I   DM VIKKIC
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

[Close]

BLAST of HG10008101 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-23
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 11  IRLALVFLVCVVILAPSVT-ARTMAEAPSPSVLEDLSFSHCTPFILKATICVIDVIKLPV 70
           ++L LVFLVC+ ILAPS T A T A APSPSV ++  F  C PFIL+AT+CV  VIK P+
Sbjct: 1   MKLVLVFLVCIAILAPSTTMAGTTAAAPSPSVPQNFPFLKCAPFILEATLCVTGVIKFPI 60

Query: 71  APHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           APHPSCCKAI +L DCAP+IYQ I   DM VIKK C
Sbjct: 61  APHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTC 96

[Close]

BLAST of HG10008101 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 3   AKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL---EDLSFSHCTPFILKATI 62
           AKS S S IRLALVFLVC+VILAPSVTA TMAEAPSP ++   +D SFS+C PFIL+AT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           C++DVIKLPVAPHPSCCKAI +LNDCAPEIYQHI  M VIKKIC
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKIC 107

[Close]

BLAST of HG10008101 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.5e-34
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 4   KSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL----EDLSFSHCTPFILKATI 63
           KS S S IRLA+VFLVC+VILAPSVTARTMAEAPSP ++    +D SFS+C PFIL+AT+
Sbjct: 5   KSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATM 64

Query: 64  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           CV+DVIKLPVA HPSCCKAI +LNDCAP+IYQHI DM VIKKIC
Sbjct: 65  CVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKIC 108

[Close]

BLAST of HG10008101 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.3e-34
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 3   AKSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVL---EDLSFSHCTPFILKATI 62
           AKS S S IRLALVFLVC+VILAPSVTA TMAEAPSP ++   +D SFS+C PFIL+AT+
Sbjct: 4   AKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATM 63

Query: 63  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           C++DVIKLPVAPHPSCCKAI +LNDCAPEIY HI  M VIKKIC
Sbjct: 64  CMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKIC 107

[Close]

BLAST of HG10008101 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.8e-31
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 4   KSMSTSIIRLALVFLVCVVILAPSVTARTMAEAPSPSVLEDLSFSHCTPFILKATICVID 63
           + MST I++++L FLV + ILAPS TA T+A APSP  LEDLSFS+CTPFIL AT+CV+ 
Sbjct: 5   RGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLALEDLSFSNCTPFILDATMCVVS 64

Query: 64  VIKLPVAPHPSCCKAIFELNDCAPEIYQHILDMGVIKKIC 104
           VIK PVAPHPSCCKAI +LNDC+PE+YQHI  M VIKKIC
Sbjct: 65  VIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKIC 104

[Close]

BLAST of HG10008101 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 70/106 (66.04%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MKAKSMSTSIIRLALVFLVCVVILAPSVT-ARTMAEAPSPSVLEDLSFSHCTPFILKATI 60
           M A+S++ S ++L LVFLVC+ ILAPS T A T A APSPSV ++  F  C PFIL+AT+
Sbjct: 1   MAAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSPSVPQNFPFLKCAPFILEATL 60

Query: 61  CVIDVIKLPVAPHPSCCKAIFELNDCAPEIYQHI--LDMGVIKKIC 104
           CV DVIK P+APHPSCCKAI +LNDCAPEIYQ I   DM VIKKIC
Sbjct: 61  CVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKIC 106

The following BLAST results are available for this feature:

BLAST of HG10008101 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10344.1	2.3e-34	76.92	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]
KAA0050064.1	8.9e-34	75.96	hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]	[more]
KAA0050068.1	1.2e-30	70.00	hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]	[more]
KAA0050069.1	4.7e-27	66.04	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	7.1e-23	64.58	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]

BLAST of HG10008101 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGL7	1.1e-34	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LTD6	2.5e-34	75.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5A7U4A7	4.3e-34	75.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U475	5.8e-31	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9A1	2.3e-27	66.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10008101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008101.1	HG10008101.1	mRNA