HG10008013 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008013
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr10: 18694015 .. 18694263 (-)
RNA-Seq Expression	HG10008013
Synteny	HG10008013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGATGAATTCTCGGTTGACTTGCCACCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCATGTTTAAGAGTAATAATAATGCCTCCAAGAAAGAAATGGGGTCGCACTTTAAATCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTCTGTTTCTTTGTGCTTTAATCCTTTGGGTTTGTTCAACCAGGTAA

mRNA sequence

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGATGAATTCTCGGTTGACTTGCCACCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCATGTTTAAGAGTAATAATAATGCCTCCAAGAAAGAAATGGGGTCGCACTTTAAATCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTCTGTTTCTTTGTGCTTTAATCCTTTGGGTTTGTTCAACCAGGTAA

Coding sequence (CDS)

ATGCATAGGTCTTCAAGCACTTCTCGGAGCTTCGATGAATTCTCGGTTGACTTGCCACCAGATTCTATAAGCTCCCCACCATTGAAGAATGAAGCTTCTGGTGTTTTGCCCATGTTTAAGAGTAATAATAATGCCTCCAAGAAAGAAATGGGGTCGCACTTTAAATCTCCAGGAGAAAATGCAGTTCACTTAATCCCTCTTACTCTGTTTCTTTGTGCTTTAATCCTTTGGGTTTGTTCAACCAGGTAA

Protein sequence

MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGENAVHLIPLTLFLCALILWVCSTR

Homology

[Close]

BLAST of HG10008013 vs. NCBI nr
Match: KAE8653076.1 (hypothetical protein Csa_019861 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 8.0e-30
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RSSSTSRSF+EFSVDL PDSISSPPLKNEASGVLP+FKSN++A KKEMGS FKSPGEN
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60

Query: 61 AVHLIPLTLFLCALILWVCST 82
          AVHLIPLTLFLCALILWVCST
Sbjct: 61 AVHLIPLTLFLCALILWVCST 80

[Close]

BLAST of HG10008013 vs. NCBI nr
Match: KAA0046741.1 (hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK14518.1 hypothetical protein E5676_scaffold15G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.7e-29
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RSSSTSRSFDEFSVDL PDSISSPPLKNEAS VLP+FKSN++A KKEMG  FKSPG N
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDA-KKEMGLQFKSPGVN 60

Query: 61 AVHLIPLTLFLCALILWVCSTR 83
          AVHLIPLTLFLCALILWVCSTR
Sbjct: 61 AVHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of HG10008013 vs. NCBI nr
Match: KAG7021797.1 (hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-21
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEA-SGVLPMFKSNNNASKKEMGSHFKSPGE 60
          MHRSSSTSR+FDE+SVD+PP   SSPPLKNEA   +LP+FK   +  KKEMG HFK PG+
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKI--DTPKKEMGPHFKPPGQ 60

Query: 61 NAVHLIPLTLFLCALILWVCSTR 83
          NAVHLIPL L L ALILW+CS+R
Sbjct: 61 NAVHLIPLILLLSALILWICSSR 81

[Close]

BLAST of HG10008013 vs. NCBI nr
Match: KAG6587911.1 (hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-21
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEA-SGVLPMFKSNNNASKKEMGSHFKSPGE 60
          MHRSSSTSR+FDE+SVD+PP   SSPPLKNEA   +LP+FK   +  KKEMG HFK PG+
Sbjct: 1  MHRSSSTSRNFDEYSVDMPPGFTSSPPLKNEAPDDLLPLFKI--DTPKKEMGPHFKPPGQ 60

Query: 61 NAVHLIPLTLFLCALILWVCSTR 83
          NAVHLIPL L L ALILW+CS+R
Sbjct: 61 NAVHLIPLILLLSALILWICSSR 81

[Close]

BLAST of HG10008013 vs. NCBI nr
Match: RVW47477.1 (hypothetical protein CK203_086512 [Vitis vinifera])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RS+STSR+ DEF V+L P ++ S PLK  AS  LPM+   ++A+KKEM  H KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 81
          A+HLIPL L LCALILWV S
Sbjct: 61 AIHLIPLLLILCALILWVFS 80

[Close]

BLAST of HG10008013 vs. ExPASy TrEMBL
Match: A0A0A0LTP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.8e-31
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RSSSTSRSF+EFSVDL PDSISSPPLKNEASGVLP+FKSN++A KKEMGS FKSPGEN
Sbjct: 1  MYRSSSTSRSFNEFSVDLLPDSISSPPLKNEASGVLPLFKSNSDA-KKEMGSQFKSPGEN 60

Query: 61 AVHLIPLTLFLCALILWVCSTR 83
          AVHLIPLTLFLCALILWVCSTR
Sbjct: 61 AVHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of HG10008013 vs. ExPASy TrEMBL
Match: A0A5A7TZH0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00330 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RSSSTSRSFDEFSVDL PDSISSPPLKNEAS VLP+FKSN++A KKEMG  FKSPG N
Sbjct: 1  MYRSSSTSRSFDEFSVDLLPDSISSPPLKNEASSVLPLFKSNSDA-KKEMGLQFKSPGVN 60

Query: 61 AVHLIPLTLFLCALILWVCSTR 83
          AVHLIPLTLFLCALILWVCSTR
Sbjct: 61 AVHLIPLTLFLCALILWVCSTR 81

[Close]

BLAST of HG10008013 vs. ExPASy TrEMBL
Match: A0A438EIF2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-15
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M+RS+STSR+ DEF V+L P ++ S PLK  AS  LPM+   ++A+KKEM  H KS GEN
Sbjct: 1  MYRSASTSRASDEFLVNLLPAAMGSTPLKTSASEDLPMYDPISDATKKEMSMHHKSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 81
          A+HLIPL L LCALILWV S
Sbjct: 61 AIHLIPLLLILCALILWVFS 80

[Close]

BLAST of HG10008013 vs. ExPASy TrEMBL
Match: A0A067KJC2 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.0e-15
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          MHRSSSTSR+ DE SV+   D     P+K  +S  LP++KS+++ASKKE+G H KS GEN
Sbjct: 1  MHRSSSTSRAADELSVNFSSDDNIVSPVKTLSSTDLPIYKSSSDASKKEIGLHQKSVGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 81
          AVHLIPL L LCALILW+ S
Sbjct: 61 AVHLIPLILLLCALILWLFS 80

[Close]

BLAST of HG10008013 vs. ExPASy TrEMBL
Match: A0A7J6F8Q8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_006425 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-14
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPGEN 60
          M RSSSTSR+ DEF V+ PP S    P+K+ A+  LP++KSN++A+KKE+G H KS GEN
Sbjct: 1  MQRSSSTSRASDEFLVNFPPPSFVPLPMKSAAAEELPLYKSNSDANKKELGVH-KSSGEN 60

Query: 61 AVHLIPLTLFLCALILWVCS 81
           +H+IPL L LC  ILWV S
Sbjct: 61 IIHVIPLILILCGFILWVFS 79

[Close]

BLAST of HG10008013 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASG-----VLPMFKSNNNASKKEMGSHFK 60
          M RS+S S   D+ S + P  S S P +K  A       +LP +  N++  KK   S F+
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNK-SRFR 60

Query: 61 SPGENAVHLIPLTLFLCALILWVCS 81
          S  ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 S-AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of HG10008013 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASG-----VLPMFKSNNNASKKEMGSHFK 60
          M RS+S S   D+ S + P  S S P +K  A       +LP +  N++  KK   S F+
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNK-SRFR 60

Query: 61 SPGENAVHLIPLTLFLCALILWVCS 81
          S  ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 S-AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of HG10008013 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASG-----VLPMFKSNNNASKKEMGSHFK 60
          M RS+S S   D+ S + P  S S P +K  A       +LP +  N++  KK   S F+
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSDDSHLLLPRYDPNSHPGKKNK-SRFR 60

Query: 61 SPGENAVHLIPLTLFLCALILWVCS 81
          S  ENA+H IP+ L LCA+ILW+ S
Sbjct: 61 S-AENAIHFIPIVLILCAVILWMFS 83

[Close]

BLAST of HG10008013 vs. TAIR 10
Match: AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 5.9e-07
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVD--LPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSHFKSPG 60
          M RS+S SR  D F      PP S S   ++++   +LP +  N+ A K+E  S F+   
Sbjct: 1  MRRSASGSRVLDHFPATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKREK-SRFRF-S 60

Query: 61 ENAVHLIPLTLFLCALILWVCS 81
          EN +HLIPL L LC  ILW+ S
Sbjct: 61 ENVIHLIPLILLLCVAILWLSS 80

[Close]

BLAST of HG10008013 vs. TAIR 10
Match: AT5G20045.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 1  MHRSSSTSRSFDEFSVDLPPDSISSPPLKNEASGVLPMFKSNNNASKKEMGSH---FKSP 60
          M R   +SR  +EF ++L  DS S   L              ++ +KKE+  H   +KS 
Sbjct: 1  MQRLQISSRPSEEFLINLSVDSASPDGL-----------VVYDDIAKKELSLHNNSYKSA 60

Query: 61 -GENAVHLIPLTLFLCALILWVCST 82
           GE A+HLIP+ LFLC  +LWV S+
Sbjct: 61 NGERAIHLIPIVLFLCGFMLWVFSS 74

The following BLAST results are available for this feature:

BLAST of HG10008013 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653076.1	8.0e-30	90.12	hypothetical protein Csa_019861 [Cucumis sativus]	[more]
KAA0046741.1	6.7e-29	87.80	hypothetical protein E6C27_scaffold216G00220 [Cucumis melo var. makuwa] >TYK1451...	[more]
KAG7021797.1	4.0e-21	69.88	hypothetical protein SDJN02_15525, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6587911.1	4.0e-21	69.88	hypothetical protein SDJN03_16476, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RVW47477.1	3.3e-15	61.25	hypothetical protein CK203_086512 [Vitis vinifera]	[more]

BLAST of HG10008013 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTP3	7.8e-31	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G305730 PE=4 SV=1	[more]
A0A5A7TZH0	3.3e-29	87.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A438EIF2	1.6e-15	61.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_086512 PE=4 SV=1	[more]
A0A067KJC2	6.0e-15	61.25	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13285 PE=4 SV=1	[more]
A0A7J6F8Q8	3.0e-14	57.50	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_006425 PE=4 SV=1	[more]

BLAST of HG10008013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35658.1	1.2e-07	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.2	1.2e-07	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	1.2e-07	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G16840.1	5.9e-07	41.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G20045.1	1.2e-04	37.65	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR34189:SF10	TRANSMEMBRANE PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008013.1	HG10008013.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane