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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTTCCATTTCAAACCCCTTTGAATCCATTTGCAACAACATCCATGGAGATAGCGGCCATGGCGGCGGTAGGAACTACCTCGACCCTCCTCCTCCTCCTCCTCCTCTCCCTCTCCCTCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTATTGCAGATTATGACTTTGCTCCAGCAGCATGA mRNA sequence ATGGCTTCCATTTCAAACCCCTTTGAATCCATTTGCAACAACATCCATGGAGATAGCGGCCATGGCGGCGGTAGGAACTACCTCGACCCTCCTCCTCCTCCTCCTCCTCTCCCTCTCCCTCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTATTGCAGATTATGACTTTGCTCCAGCAGCATGA Coding sequence (CDS) ATGGCTTCCATTTCAAACCCCTTTGAATCCATTTGCAACAACATCCATGGAGATAGCGGCCATGGCGGCGGTAGGAACTACCTCGACCCTCCTCCTCCTCCTCCTCCTCTCCCTCTCCCTCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCTTCCATCGATATAGGTGGAGGCGGAAGCATTATTGCAGATTATGACTTTGCTCCAGCAGCATGA Protein sequence MASISNPFESICNNIHGDSGHGGGRNYLDPPPPPPPLPLPLPPLPLPLPLPQPSIDIGGGGSIIADYDFAPAA
Homology
BLAST of HG10007988 vs. NCBI nr
Match: KGN65403.1 (hypothetical protein Csa_019940 [Cucumis sativus]) HSP 1 Score: 86.7 bits (213), Expect = 9.3e-14 Identity = 50/74 (67.57%), Postives = 54/74 (72.97%), Query Frame = 0
Query: 1 MASISNP-FESICNNIHGDSGHGGGRNYLDPPPPPPPLPLPLPPLPLPLPLPQPSIDIGG 60
MASIS+ F+S N HGD H GG+NYLDPPPPP PLPLPLPQP IDIGG
Sbjct: 1 MASISSELFQSNLKNSHGDRCH-GGKNYLDPPPPP----------PLPLPLPQPHIDIGG 60
Query: 61 GGSIIADYDFAPAA 74
GGSI+ADYDFAPAA
Sbjct: 61 GGSIVADYDFAPAA 63
BLAST of HG10007988 vs. ExPASy TrEMBL
Match: A0A0A0LUD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14 Identity = 50/74 (67.57%), Postives = 54/74 (72.97%), Query Frame = 0
Query: 1 MASISNP-FESICNNIHGDSGHGGGRNYLDPPPPPPPLPLPLPPLPLPLPLPQPSIDIGG 60
MASIS+ F+S N HGD H GG+NYLDPPPPP PLPLPLPQP IDIGG
Sbjct: 1 MASISSELFQSNLKNSHGDRCH-GGKNYLDPPPPP----------PLPLPLPQPHIDIGG 60
Query: 61 GGSIIADYDFAPAA 74
GGSI+ADYDFAPAA
Sbjct: 61 GGSIVADYDFAPAA 63
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KGN65403.1 | 9.3e-14 | 67.57 | hypothetical protein Csa_019940 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
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| A0A0A0LUD7 | 4.5e-14 | 67.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G409740 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..45 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..45 |
Relationships
The following mRNA feature(s) are a part of this gene:
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