HG10007881 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10007881
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein MNN4-like
LocationChr10: 16393431 .. 16393784 (+)
RNA-Seq ExpressionHG10007881
SyntenyHG10007881
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGCCTTACGACTCAAAGGTAAGAAGGGAACACAATGGCACATCTCACCAATAGGGTGTCGAACACTCAGACCTGGCAACATAAAGGAGGAGCTCGCCATATGGCTATACTTCATCAAGCATAGGATTATGCCAACCTCCCACGACTCCATAATTTTTATGGGGAGAGTCATGGTCTTATACTGCCTTAGGAAAGGGCTTGAAATTGATATTGATAGTATTATCCGACAGGAGATTATGAAGCATTCTTTGCCTTCTTCATCTCCCAATTGTGTAGGAATGACAGAATTGAGGTGGTCGAAGAAGAAAGATGCAAGCTCAAACTGGCTATGGACTTGCATTTCATGA

mRNA sequence

ATGAAAGATGCCTTACGACTCAAAGGTAAGAAGGGAACACAATGGCACATCTCACCAATAGGGTGTCGAACACTCAGACCTGGCAACATAAAGGAGGAGCTCGCCATATGGCTATACTTCATCAAGCATAGGATTATGCCAACCTCCCACGACTCCATAATTTTTATGGGGAGAGTCATGGTCTTATACTGCCTTAGGAAAGGGCTTGAAATTGATATTGATAGTATTATCCGACAGGAGATTATGAAGCATTCTTTGCCTTCTTCATCTCCCAATTGTGTAGGAATGACAGAATTGAGGTGGTCGAAGAAGAAAGATGCAAGCTCAAACTGGCTATGGACTTGCATTTCATGA

Coding sequence (CDS)

ATGAAAGATGCCTTACGACTCAAAGGTAAGAAGGGAACACAATGGCACATCTCACCAATAGGGTGTCGAACACTCAGACCTGGCAACATAAAGGAGGAGCTCGCCATATGGCTATACTTCATCAAGCATAGGATTATGCCAACCTCCCACGACTCCATAATTTTTATGGGGAGAGTCATGGTCTTATACTGCCTTAGGAAAGGGCTTGAAATTGATATTGATAGTATTATCCGACAGGAGATTATGAAGCATTCTTTGCCTTCTTCATCTCCCAATTGTGTAGGAATGACAGAATTGAGGTGGTCGAAGAAGAAAGATGCAAGCTCAAACTGGCTATGGACTTGCATTTCATGA

Protein sequence

MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVMVLYCLRKGLEIDIDSIIRQEIMKHSLPSSSPNCVGMTELRWSKKKDASSNWLWTCIS
Homology
BLAST of HG10007881 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           M+DALR   + GTQW +S  G +TL    +  E  +W+Y +K RI+PTSHD  +   RVM
Sbjct: 271 MEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVM 330

Query: 61  VLYCLRKGLEIDIDSII 78
             YC+  G+ ID+  +I
Sbjct: 331 AAYCIACGILIDVSHLI 347

BLAST of HG10007881 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           M++AL      G +W I+PI    L P N+K   ++WL FIK  +MPT HD+ I + R+M
Sbjct: 222 MQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIM 281

Query: 61  VLYCLRKGLEIDIDSIIRQEI 82
           +LYC+ + + +++D II + I
Sbjct: 282 LLYCIMEEIPLNVDEIIYEPI 302

BLAST of HG10007881 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1    MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
            +++A RL  +    W IS +G  +L+P +I E+  +W+Y +K+R++PTS+DS I   R M
Sbjct: 1199 VEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAM 1258

Query: 61   VLYCLRKGLEIDIDSIIRQEIMKHS 86
            ++Y L KG+E +   +IR EI   S
Sbjct: 1259 IVYILVKGVEFNFGELIRNEIQSCS 1283

BLAST of HG10007881 vs. NCBI nr
Match: TYJ95705.1 (hypothetical protein E5676_scaffold282G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 1  MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
          MKD L     KGT W  +PIG   L P N+  +  IWL+ +K ++MPT HD+ I + +VM
Sbjct: 1  MKDELETIAWKGTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVM 60

Query: 61 VLYCLRKGLEIDI 74
          +LYC+ + + +++
Sbjct: 61 LLYCIMQEISVNV 73

BLAST of HG10007881 vs. NCBI nr
Match: KAA0057652.1 (hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19535.1 hypothetical protein E5676_scaffold416G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           ++DAL+      T+W I P G   L   N+  E  IWL F+K+ I PT HDS I M  +M
Sbjct: 38  LEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIRPTRHDSTISMEHIM 97

Query: 61  VLYCLRKGLEIDIDSIIRQEIM 83
           ++YC+ + L ++I  II + I+
Sbjct: 98  LVYCIMEHLLVNIVEIISEHII 119

BLAST of HG10007881 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           M++AL      G +W I+PI    L P N+K   ++WL FIK  +MPT HD+ I + R+M
Sbjct: 222 MQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIM 281

Query: 61  VLYCLRKGLEIDIDSIIRQEI 82
           +LYC+ + + +++D II + I
Sbjct: 282 LLYCIMEEIPLNVDEIIYEPI 302

BLAST of HG10007881 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 0

Query: 1    MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
            +++A RL  +    W IS +G  +L+P +I E+  +W+Y +K+R++PTS+DS I   R M
Sbjct: 1199 VEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLIPTSYDSSIKRNRAM 1258

Query: 61   VLYCLRKGLEIDIDSIIRQEIMKHS 86
            ++Y L KG+E +   +IR EI   S
Sbjct: 1259 IVYILVKGVEFNFGELIRNEIQSCS 1283

BLAST of HG10007881 vs. ExPASy TrEMBL
Match: A0A5D3BB37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00030 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.9e-08
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 1  MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
          MKD L     KGT W  +PIG   L P N+  +  IWL+ +K ++MPT HD+ I + +VM
Sbjct: 1  MKDELETIAWKGTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVM 60

Query: 61 VLYCLRKGLEIDI 74
          +LYC+ + + +++
Sbjct: 61 LLYCIMQEISVNV 73

BLAST of HG10007881 vs. ExPASy TrEMBL
Match: A0A5D3D7L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00290 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           ++DAL+      T+W I P G   L   N+  E  IWL F+K+ I PT HDS I M  +M
Sbjct: 38  LEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIRPTRHDSTISMEHIM 97

Query: 61  VLYCLRKGLEIDIDSIIRQEIM 83
           ++YC+ + L ++I  II + I+
Sbjct: 98  LVYCIMEHLLVNIVEIISEHII 119

BLAST of HG10007881 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1   MKDALRLKGKKGTQWHISPIGCRTLRPGNIKEELAIWLYFIKHRIMPTSHDSIIFMGRVM 60
           M++AL        +W ++ I    L   N+  E ++WL FIK ++MPT HD+ I   R+M
Sbjct: 166 MQEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIM 225

Query: 61  VLYCLRKGLEIDIDSIIRQEI 82
           +LYC+ + + +D+D II   I
Sbjct: 226 LLYCIMEEIPVDVDEIICDHI 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904385.11.5e-1042.86uncharacterized protein LOC120090747 [Benincasa hispida][more]
KAA0048500.12.2e-0939.51protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
XP_022154847.13.8e-0938.82LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia][more]
TYJ95705.11.2e-0739.73hypothetical protein E5676_scaffold282G00030 [Cucumis melo var. makuwa][more]
KAA0057652.12.7e-0739.02hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa] >TYK19... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZE01.1e-0939.51Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A6J1DMT31.8e-0938.82LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia... [more]
A0A5D3BB375.9e-0839.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D7L31.3e-0739.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DVQ63.8e-0735.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10007881.1HG10007881.1mRNA