HG10007742 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007742
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	Chr10: 11426784 .. 11427152 (+)
RNA-Seq Expression	HG10007742
Synteny	HG10007742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGGGACAGGGAACTGGGCGAGGACAAGGAATGCAAAATCTCCGTTCCCGTCCCCGTCCCTATTTAGCTTTTGGAAATTTTTACCATAATGTGGAAGAATTGCCTTTTATGATGCAGACGCAATGCCAGACTGATTATGCTACTTCGATGAGGATGATGCCACCATTTGGTTCAGGATATTATGATTCGGAGGTAGGTACATCGTCTTCATACATGCACACACATGGGTGCGATCATGAAAAACATAATCAATATTTATACTATGAAGCGCTTGCAGATGTACCAGAGCCACCAGATGATCAAGAGGAACCTGAGCAACCTAGAGTTCAAAGTCGACGACGACAACTAGCTCAAAATCGATGA

mRNA sequence

ATGGAGCAGGGACAGGGAACTGGGCGAGGACAAGGAATGCAAAATCTCCGTTCCCGTCCCCGTCCCTATTTAGCTTTTGGAAATTTTTACCATAATGTGGAAGAATTGCCTTTTATGATGCAGACGCAATGCCAGACTGATTATGCTACTTCGATGAGGATGATGCCACCATTTGGTTCAGGATATTATGATTCGGAGGTAGGTACATCGTCTTCATACATGCACACACATGGGTGCGATCATGAAAAACATAATCAATATTTATACTATGAAGCGCTTGCAGATGTACCAGAGCCACCAGATGATCAAGAGGAACCTGAGCAACCTAGAGTTCAAAGTCGACGACGACAACTAGCTCAAAATCGATGA

Coding sequence (CDS)

ATGGAGCAGGGACAGGGAACTGGGCGAGGACAAGGAATGCAAAATCTCCGTTCCCGTCCCCGTCCCTATTTAGCTTTTGGAAATTTTTACCATAATGTGGAAGAATTGCCTTTTATGATGCAGACGCAATGCCAGACTGATTATGCTACTTCGATGAGGATGATGCCACCATTTGGTTCAGGATATTATGATTCGGAGGTAGGTACATCGTCTTCATACATGCACACACATGGGTGCGATCATGAAAAACATAATCAATATTTATACTATGAAGCGCTTGCAGATGTACCAGAGCCACCAGATGATCAAGAGGAACCTGAGCAACCTAGAGTTCAAAGTCGACGACGACAACTAGCTCAAAATCGATGA

Protein sequence

MEQGQGTGRGQGMQNLRSRPRPYLAFGNFYHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSEVGTSSSYMHTHGCDHEKHNQYLYYEALADVPEPPDDQEEPEQPRVQSRRRQLAQNR

Homology

[Close]

BLAST of HG10007742 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-16
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSE------------------VGTSS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DSE                  VG S+
Sbjct: 27  YHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSN 86

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH HG  + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 87  SYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 143

[Close]

BLAST of HG10007742 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSEVGT------------------SS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DS++GT                  S+
Sbjct: 33  YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPST 92

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQN 122
           SYMH HG  + KHN+YLY+EA ADV       + P++QE+ EQ RVQ R RQ A+N
Sbjct: 93  SYMHGHGRGYGKHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQDRCRQPARN 148

[Close]

BLAST of HG10007742 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSE------------------VGTSS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DSE                  VG S+
Sbjct: 376 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPST 435

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYM+ HG  + +HN+YLY+EA  DV       + P +QE+ EQ RVQSRRRQ A+NR
Sbjct: 436 SYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNR 492

[Close]

BLAST of HG10007742 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-14
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPF---------GSGYYDSEVGTSS--------- 89
           YHNVEE+P   QTQ QT Y + M MMP F         G GYYD+ VG SS         
Sbjct: 98  YHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPST 157

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH H   + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 158 SYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 214

[Close]

BLAST of HG10007742 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPF---------GSGYYDSEVGTSS--------- 89
           YHNVEE+P   QTQ QT Y + M MMP F         G GYYD+ VG SS         
Sbjct: 86  YHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPST 145

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH H   + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 146 SYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 202

[Close]

BLAST of HG10007742 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSE------------------VGTSS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DSE                  VG S+
Sbjct: 27  YHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSN 86

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH HG  + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 87  SYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 143

[Close]

BLAST of HG10007742 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 56/116 (48.28%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSEVGT------------------SS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DS++GT                  S+
Sbjct: 33  YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPST 92

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQN 122
           SYMH HG  + KHN+YLY+EA ADV       + P++QE+ EQ RVQ R RQ A+N
Sbjct: 93  SYMHGHGRGYGKHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQDRCRQPARN 148

[Close]

BLAST of HG10007742 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPFGSGYYDSE------------------VGTSS 89
           YHNVEE+P   QTQ QT Y + M MMP FG+GY DSE                  VG S+
Sbjct: 376 YHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPST 435

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYM+ HG  + +HN+YLY+EA  DV       + P +QE+ EQ RVQSRRRQ A+NR
Sbjct: 436 SYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQHRVQSRRRQPARNR 492

[Close]

BLAST of HG10007742 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPF---------GSGYYDSEVGTSS--------- 89
           YHNVEE+P   QTQ QT Y + M MMP F         G GYYD+ VG SS         
Sbjct: 98  YHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPST 157

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH H   + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 158 SYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 214

[Close]

BLAST of HG10007742 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 30  YHNVEELPFMMQTQCQTDYATSMRMMPPF---------GSGYYDSEVGTSS--------- 89
           YHNVEE+P   QTQ QT Y + M MMP F         G GYYD+ VG SS         
Sbjct: 86  YHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPST 145

Query: 90  SYMHTHGCDHEKHNQYLYYEALADV------PEPPDDQEEPEQPRVQSRRRQLAQNR 123
           SYMH H   + +HN+YLY+EA ADV       + P++QE+ EQ RVQSRRRQ  +NR
Sbjct: 146 SYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 202

The following BLAST results are available for this feature:

BLAST of HG10007742 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	4.4e-16	49.57	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01111.1	2.2e-15	48.28	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	4.8e-15	48.72	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0062642.1	3.1e-14	48.72	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	5.3e-14	48.72	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of HG10007742 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10007742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	2.1e-16	49.57	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BMS3	1.1e-15	48.28	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	2.3e-15	48.72	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7V342	1.5e-14	48.72	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	2.6e-14	48.72	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of HG10007742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007742.1	HG10007742.1	mRNA