HG10007484 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007484
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cytochrome c-type biogenesis protein CcmE
Location	Chr10: 5867282 .. 5868061 (+)
RNA-Seq Expression	HG10007484
Synteny	HG10007484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACAAATCTCGCTCTCCGACTCAGATCAAGCCTCCTTTTGCAGTCTTCAGCTCGTTTCCGCTCCACTTTTCATCACATTCAATCCCCCCACTTCCCCAAATCTGCCCCTCTTATCTCCTCTGCTCTTTATGATCTTCGTCGACTTCCCGATGACCCCATCTTCAATCTCTCTGGATTTCGGTTCCTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCAGGTCGACATCGGAGCTCGGGCCAGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTTTGACTTTCAGCTGCATCGCGGGGTTCATTGTCATCGTCCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACGCCGACCGATGCGCTCGAGAAATACTCTACGAATCCCTCGAAGAACAAGTTTCGTCTCGGTGGTTTGGTTCTTGAAGGCAGTGTAGTGCATCCGGCATCGTCTTCTCAAATGGAGTTTGTGATAACTGATTTGATCACCGATATATTGGTTCGCCATCAGGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCCGTTGTGGTGGAAGGATTTGTTAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGGAGAATATTATTTTTCAGCTACTGAGGTTTTGGCTAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCGGCAGCAATCGAGAAGAACAAGAAGAAGATTGAGGAAGGAGAATTGGGGGTTAACCACGCTTGA

mRNA sequence

ATGGCTACAAATCTCGCTCTCCGACTCAGATCAAGCCTCCTTTTGCAGTCTTCAGCTCGTTTCCGCTCCACTTTTCATCACATTCAATCCCCCCACTTCCCCAAATCTGCCCCTCTTATCTCCTCTGCTCTTTATGATCTTCGTCGACTTCCCGATGACCCCATCTTCAATCTCTCTGGATTTCGGTTCCTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCAGGTCGACATCGGAGCTCGGGCCAGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTTTGACTTTCAGCTGCATCGCGGGGTTCATTGTCATCGTCCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACGCCGACCGATGCGCTCGAGAAATACTCTACGAATCCCTCGAAGAACAAGTTTCGTCTCGGTGGTTTGGTTCTTGAAGGCAGTGTAGTGCATCCGGCATCGTCTTCTCAAATGGAGTTTGTGATAACTGATTTGATCACCGATATATTGGTTCGCCATCAGGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCCGTTGTGGTGGAAGGATTTGTTAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGGAGAATATTATTTTTCAGCTACTGAGGTTTTGGCTAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCGGCAGCAATCGAGAAGAACAAGAAGAAGATTGAGGAAGGAGAATTGGGGGTTAACCACGCTTGA

Coding sequence (CDS)

ATGGCTACAAATCTCGCTCTCCGACTCAGATCAAGCCTCCTTTTGCAGTCTTCAGCTCGTTTCCGCTCCACTTTTCATCACATTCAATCCCCCCACTTCCCCAAATCTGCCCCTCTTATCTCCTCTGCTCTTTATGATCTTCGTCGACTTCCCGATGACCCCATCTTCAATCTCTCTGGATTTCGGTTCCTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCAGGTCGACATCGGAGCTCGGGCCAGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTTTGACTTTCAGCTGCATCGCGGGGTTCATTGTCATCGTCCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACGCCGACCGATGCGCTCGAGAAATACTCTACGAATCCCTCGAAGAACAAGTTTCGTCTCGGTGGTTTGGTTCTTGAAGGCAGTGTAGTGCATCCGGCATCGTCTTCTCAAATGGAGTTTGTGATAACTGATTTGATCACCGATATATTGGTTCGCCATCAGGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCCGTTGTGGTGGAAGGATTTGTTAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGGAGAATATTATTTTTCAGCTACTGAGGTTTTGGCTAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCGGCAGCAATCGAGAAGAACAAGAAGAAGATTGAGGAAGGAGAATTGGGGGTTAACCACGCTTGA

Protein sequence

MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAAAIEKNKKKIEEGELGVNHA

Homology

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BLAST of HG10007484 vs. NCBI nr
Match: XP_038880283.1 (cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880284.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880285.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880286.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida])

HSP 1 Score: 478.8 bits (1231), Expect = 3.0e-131
Identity = 245/259 (94.59%), Postives = 249/259 (96.14%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLALRLRS LLLQSSARFRS FHHIQ PH PKS+PLISSAL DLRR P+DPIFNLSG
Sbjct: 1   MATNLALRLRSRLLLQSSARFRSNFHHIQPPHLPKSSPLISSALSDLRRFPNDPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEKYS NPSKNKFRLGGLVLEGSV+HPASSSQMEFVITDLITDILVRHQGSLPDL
Sbjct: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVMHPASSSQMEFVITDLITDILVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFVKPFTDEIR EVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFVKPFTDEIRNEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKNKKKI EGELG+NHA
Sbjct: 241 AIEKNKKKIAEGELGLNHA 259

[Close]

BLAST of HG10007484 vs. NCBI nr
Match: XP_004139025.1 (cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Cucumis sativus] >KGN66477.1 hypothetical protein Csa_007598 [Cucumis sativus])

HSP 1 Score: 461.8 bits (1187), Expect = 3.8e-126
Identity = 233/259 (89.96%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLALRLRS LLLQSS+RFR+TFH  QSPH PKS+PLI+SAL DLRR+P++PIFNLSG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NPSKNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVSGKARS +YYFSA EVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

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BLAST of HG10007484 vs. NCBI nr
Match: XP_008450439.1 (PREDICTED: cytochrome c-type biogenesis protein CcmE [Cucumis melo] >KAA0059091.1 cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa])

HSP 1 Score: 459.1 bits (1180), Expect = 2.4e-125
Identity = 232/259 (89.58%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLA RLRS LLLQSS+RFR+TFH IQSPH PKS+PLISSAL DLRR+PD+PIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NP+KNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS +YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of HG10007484 vs. NCBI nr
Match: TYK18839.1 (cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa])

HSP 1 Score: 454.1 bits (1167), Expect = 7.9e-124
Identity = 232/259 (89.58%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLA RLRS LLLQSS RFR+TFH IQSPH PKS+PLISSAL DLRR+PD+PIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSS-RFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NP+KNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS +YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 258

[Close]

BLAST of HG10007484 vs. NCBI nr
Match: XP_022154075.1 (uncharacterized protein LOC111021418 [Momordica charantia])

HSP 1 Score: 451.8 bits (1161), Expect = 3.9e-123
Identity = 235/259 (90.73%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLALRLRS LLL+S+ RF+STF HI +P   KS+ LIS  L D RRLPD P+F+ SG
Sbjct: 1   MATNLALRLRSQLLLRST-RFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV
Sbjct: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEKYS NPSKNKFRLGGLVLEGSVVHPASS QMEFVITDLITDILVRHQGSLPDL
Sbjct: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSG+YYFSATEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKNKKKIEEGELGVNHA
Sbjct: 241 AIEKNKKKIEEGELGVNHA 258

[Close]

BLAST of HG10007484 vs. ExPASy Swiss-Prot
Match: Q96326 (Cytochrome c-type biogenesis protein CcmE homolog, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CCME PE=1 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-81
Identity = 164/252 (65.08%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDP--IFNL 60
           MA  L  R RSS +L+S  R        +SP  P          + L     DP  + +L
Sbjct: 1   MAARLLFR-RSSQILRSIQRNPQISSSFESPPCP--------IFHSLTTASPDPSRLSSL 60

Query: 61  SGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMF 120
           +  R LS ARR  TRPK++DIGA+ARQ+Q RRLWTYALTFSCIAGF+VIVL+ FQ+ L+F
Sbjct: 61  TFLRSLSIARRGPTRPKKIDIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVF 120

Query: 121 YVTPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLP 180
           Y+TP+DA+EK++ NP+KNKFRLGGLVLEGSV  PA+S +MEFVITDLITDILVR++GSLP
Sbjct: 121 YLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLP 180

Query: 181 DLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEV 240
           DLFREGHSVVVEGF+KP+TDE+RKEVSTK +S KAR+ + +FSATEVLAKHDEKYMP EV
Sbjct: 181 DLFREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEV 240

Query: 241 AAAIEKNKKKIE 251
           AAAIEKNKK IE
Sbjct: 241 AAAIEKNKKIIE 243

[Close]

BLAST of HG10007484 vs. ExPASy Swiss-Prot
Match: Q2RYF4 (Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=ccmE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-19
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 89  RRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSTNPSKNKFRLGGLVLEGS 148
           RRL+   L    +     + L+ FQ++L+F+ +PTD  EK        +FR+GGLV EGS
Sbjct: 6   RRLYFVVLGMLALFAAAGLTLTAFQDNLVFFYSPTDLQEK--GVDQGRRFRVGGLVEEGS 65

Query: 149 VVHPASSSQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKS 208
           VV    +  + F++TDL+  + VR+ G LPDLFREG  VV EG                 
Sbjct: 66  VVRDGET--VRFIVTDLMNTVTVRYTGMLPDLFREGQGVVAEG----------------- 125

Query: 209 VSGKARSGEYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 248
               A  G   F A  VLAKHDE YMP EVA +++ + K
Sbjct: 126 ----AMDGAGTFVAASVLAKHDENYMPPEVAESLKASGK 139

[Close]

BLAST of HG10007484 vs. ExPASy Swiss-Prot
Match: Q5P3K6 (Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=ccmE PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.1e-19
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 87  QTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSTNPSKNKFRLGGLVLE 146
           +++RL   A   + + G + +VL+ FQ++L+F+ TPT+  E     P    FR+GG+V  
Sbjct: 4   RSKRLLLVAGAVALLVGAVALVLNAFQQNLVFFHTPTEVAE--GKAPVGRAFRIGGMVET 63

Query: 147 GSVVHPASSSQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVST 206
           GS+   A    ++F ITD    I V ++GSLPDLF EG   VV+G + P           
Sbjct: 64  GSIRRAADGVTVQFAITDTAKVIPVSYKGSLPDLFSEGKGAVVQGTLGP----------- 123

Query: 207 KSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 248
                     +  F A+EVLAKHDE YMP E   A+++ +K
Sbjct: 124 ----------DGQFQASEVLAKHDENYMPPEAQHAVDQAQK 141

[Close]

BLAST of HG10007484 vs. ExPASy Swiss-Prot
Match: A1KCJ1 (Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) OX=418699 GN=ccmE PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-18
Identity = 61/161 (37.89%), Postives = 83/161 (51.55%), Query Frame = 0


Query: 87  QTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSTNPSKNKFRLGGLVLE 146
           + +RL       + +     +VLS FQ++L+F+ TP++  E     P    FR+GG+V  
Sbjct: 4   RNKRLMLVGGGIALLVAAAALVLSAFQQNLVFFHTPSEVAE--GKAPVGKTFRVGGMVET 63

Query: 147 GSVVHPASSSQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVST 206
           GS+   A    + FVITD    I V ++GSLPDLF+EG   VV+G              T
Sbjct: 64  GSIQRDADGVTVRFVITDTAKVIPVSYRGSLPDLFKEGKGAVVQG--------------T 123

Query: 207 KSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 248
               G+       F ATEVLAKHDE YMP E A A+E+  K
Sbjct: 124 LGADGQ-------FRATEVLAKHDENYMPPEAAHALEQAHK 141

[Close]

BLAST of HG10007484 vs. ExPASy Swiss-Prot
Match: B3R8Z5 (Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1) OX=977880 GN=ccmE PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-18
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 0


Query: 89  RRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSTNPSKNKFRLGGLVLEGS 148
           RRL   A   +C      +VL+ F+ +L+F+ +P+    + +  P    FRLGGLV  GS
Sbjct: 6   RRLGLLAAALACCGVAAALVLNAFRANLVFFFSPSQVAAQEA--PVARSFRLGGLVASGS 65

Query: 149 VVHPASSSQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKS 208
           +        + FV+TD    + V+++G LPDLFREG  VV  G ++              
Sbjct: 66  IRREGDGMTVRFVVTDTARQVPVQYRGLLPDLFREGKGVVARGQLR-------------- 125

Query: 209 VSGKARSGEYYFSATEVLAKHDEKYMPAEVAAAIEK 245
                   +  F ATEVLAKHDE YMP E AAA+++
Sbjct: 126 -------ADGTFVATEVLAKHDENYMPPEAAAALKQ 138

[Close]

BLAST of HG10007484 vs. ExPASy TrEMBL
Match: A0A0A0M028 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613490 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.8e-126
Identity = 233/259 (89.96%), Postives = 247/259 (95.37%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLALRLRS LLLQSS+RFR+TFH  QSPH PKS+PLI+SAL DLRR+P++PIFNLSG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NPSKNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVSGKARS +YYFSA EVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of HG10007484 vs. ExPASy TrEMBL
Match: A0A5A7V022 (Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold601G00020 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125
Identity = 232/259 (89.58%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLA RLRS LLLQSS+RFR+TFH IQSPH PKS+PLISSAL DLRR+PD+PIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NP+KNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS +YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of HG10007484 vs. ExPASy TrEMBL
Match: A0A1S3BP93 (cytochrome c-type biogenesis protein CcmE OS=Cucumis melo OX=3656 GN=LOC103492039 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.2e-125
Identity = 232/259 (89.58%), Postives = 245/259 (94.59%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLA RLRS LLLQSS+RFR+TFH IQSPH PKS+PLISSAL DLRR+PD+PIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NP+KNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS +YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of HG10007484 vs. ExPASy TrEMBL
Match: A0A5D3D5K7 (Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00310 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.8e-124
Identity = 232/259 (89.58%), Postives = 244/259 (94.21%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLA RLRS LLLQSS RFR+TFH IQSPH PKS+PLISSAL DLRR+PD+PIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSS-RFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+S NP+KNKFRLGGLVLEGSV HPASSSQMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS +YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 258

[Close]

BLAST of HG10007484 vs. ExPASy TrEMBL
Match: A0A6J1DIL0 (uncharacterized protein LOC111021418 OS=Momordica charantia OX=3673 GN=LOC111021418 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.9e-123
Identity = 235/259 (90.73%), Postives = 243/259 (93.82%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDPIFNLSG 60
           MATNLALRLRS LLL+S+ RF+STF HI +P   KS+ LIS  L D RRLPD P+F+ SG
Sbjct: 1   MATNLALRLRSQLLLRST-RFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV
Sbjct: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEKYS NPSKNKFRLGGLVLEGSVVHPASS QMEFVITDLITDILVRHQGSLPDL
Sbjct: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSG+YYFSATEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 260
           AIEKNKKKIEEGELGVNHA
Sbjct: 241 AIEKNKKKIEEGELGVNHA 258

[Close]

BLAST of HG10007484 vs. TAIR 10
Match: AT3G51790.1 (transmembrane protein G1P-related 1 )

HSP 1 Score: 304.3 bits (778), Expect = 9.4e-83
Identity = 164/252 (65.08%), Postives = 196/252 (77.78%), Query Frame = 0


Query: 1   MATNLALRLRSSLLLQSSARFRSTFHHIQSPHFPKSAPLISSALYDLRRLPDDP--IFNL 60
           MA  L  R RSS +L+S  R        +SP  P          + L     DP  + +L
Sbjct: 1   MAARLLFR-RSSQILRSIQRNPQISSSFESPPCP--------IFHSLTTASPDPSRLSSL 60

Query: 61  SGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMF 120
           +  R LS ARR  TRPK++DIGA+ARQ+Q RRLWTYALTFSCIAGF+VIVL+ FQ+ L+F
Sbjct: 61  TFLRSLSIARRGPTRPKKIDIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVF 120

Query: 121 YVTPTDALEKYSTNPSKNKFRLGGLVLEGSVVHPASSSQMEFVITDLITDILVRHQGSLP 180
           Y+TP+DA+EK++ NP+KNKFRLGGLVLEGSV  PA+S +MEFVITDLITDILVR++GSLP
Sbjct: 121 YLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLP 180

Query: 181 DLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEV 240
           DLFREGHSVVVEGF+KP+TDE+RKEVSTK +S KAR+ + +FSATEVLAKHDEKYMP EV
Sbjct: 181 DLFREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEV 240

Query: 241 AAAIEKNKKKIE 251
           AAAIEKNKK IE
Sbjct: 241 AAAIEKNKKIIE 243

The following BLAST results are available for this feature:

BLAST of HG10007484 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880283.1	3.0e-131	94.59	cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hisp...	[more]
XP_004139025.1	3.8e-126	89.96	cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Cucumis sativu...	[more]
XP_008450439.1	2.4e-125	89.58	PREDICTED: cytochrome c-type biogenesis protein CcmE [Cucumis melo] >KAA0059091....	[more]
TYK18839.1	7.9e-124	89.58	cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa]	[more]
XP_022154075.1	3.9e-123	90.73	uncharacterized protein LOC111021418 [Momordica charantia]	[more]

BLAST of HG10007484 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96326	1.3e-81	65.08	Cytochrome c-type biogenesis protein CcmE homolog, mitochondrial OS=Arabidopsis ...	[more]
Q2RYF4	3.2e-19	38.99	Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC ...	[more]
Q5P3K6	7.1e-19	36.02	Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1...	[more]
A1KCJ1	4.6e-18	37.89	Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) OX=41869...	[more]
B3R8Z5	4.6e-18	35.90	Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus taiwanensis (strain DSM...	[more]

BLAST of HG10007484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M028	1.8e-126	89.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613490 PE=3 SV=1	[more]
A0A5A7V022	1.2e-125	89.58	Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BP93	1.2e-125	89.58	cytochrome c-type biogenesis protein CcmE OS=Cucumis melo OX=3656 GN=LOC10349203...	[more]
A0A5D3D5K7	3.8e-124	89.58	Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1DIL0	1.9e-123	90.73	uncharacterized protein LOC111021418 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of HG10007484 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51790.1	9.4e-83	65.08	transmembrane protein G1P-related 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004329	CcmE/CycJ protein	PFAM	PF03100	CcmE	coord: 87..235 e-value: 1.2E-43 score: 148.1
IPR004329	CcmE/CycJ protein	PANTHER	PTHR34128	CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCME HOMOLOG, MITOCHONDRIAL	coord: 1..253
IPR004329	CcmE/CycJ protein	HAMAP	MF_01959	CcmE	coord: 84..246 score: 24.752542
None	No IPR available	GENE3D	2.40.50.140		coord: 112..242 e-value: 1.3E-29 score: 104.5
IPR036127	CcmE-like superfamily	SUPERFAMILY	82093	Heme chaperone CcmE	coord: 112..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007484.1	HG10007484.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0017003	protein-heme linkage
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0020037	heme binding