HG10007275 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007275
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr10: 3267270 .. 3267809 (-)
RNA-Seq Expression	HG10007275
Synteny	HG10007275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGTCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGTCTTGTGGTCGTCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCAAGTGGTGCTCTGACAACCGCCACCGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCGAATTCAAGAAGGGGTCGACGGTGGCGGCGGCAGCAGCGGCGGAAGAAGAAGGGAATGGGAATGAATGTGCGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTTCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGTGCTCCGGTGGCGGCGTCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTATTGGAATCCGGCGACTTGGTTTGA

mRNA sequence

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGTCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGTCTTGTGGTCGTCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCAAGTGGTGCTCTGACAACCGCCACCGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCGAATTCAAGAAGGGGTCGACGGTGGCGGCGGCAGCAGCGGCGGAAGAAGAAGGGAATGGGAATGAATGTGCGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTTCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGTGCTCCGGTGGCGGCGTCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTATTGGAATCCGGCGACTTGGTTTGA

Coding sequence (CDS)

ATGAGTGATTCTTCTTCAACCTCTTTTGCTCAGCCAACGTCTCATCCTGCAAAATCAAGCTTACCCATGTTGTATTATGGTCTTGTGGTCGTCGGAACGGCGGCGATTGTGTTAGTTCTTTACAATTTCATCGTTATCAAGTGGTGCTCTGACAACCGCCACCGCCGAGCTTCGCCGGCGCTGGCTGGAAGTTATGCAGAGATGATGAATTCAAGCCGTAGCTTCCAGAGCTCGTTGTGCAGCTTCGAATTCAAGAAGGGGTCGACGGTGGCGGCGGCAGCAGCGGCGGAAGAAGAAGGGAATGGGAATGAATGTGCGGTTTGTTTGTCGGCGTTTGAGGATGGGGAAGAGGTTAAGAAACTTCCGAGATGCACACATATGTTTCATGCTTCTTGTATAGACATGTGGCTTTACTCTCACTCCGATTGCCCTCTCTGCCGTGCTCCGGTGGCGGCGTCGGGGCTGAGCCAACACCAAACCACGGCGGAGCAACAGGAGAATTCAGGGCATGGTTTATTGGAATCCGGCGACTTGGTTTGA

Protein sequence

MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPALAGSYAEMMNSSRSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESGDLV

Homology

[Close]

BLAST of HG10007275 vs. NCBI nr
Match: XP_038879803.1 (RING-H2 finger protein ATL39-like [Benincasa hispida])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 167/179 (93.30%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDSSSTSFAQPT HPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA
Sbjct: 1   MSDSSSTSFAQPTPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVKK 120
           LAGSYAEMMNSSRSF SSLCSF+FKKGSTV AAAAAEEEG GNECAVCLSAFEDG+EVKK
Sbjct: 61  LAGSYAEMMNSSRSFHSSLCSFKFKKGSTV-AAAAAEEEGYGNECAVCLSAFEDGDEVKK 120

Query: 121 LPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESGDLV 180
           LPRCTHMFHASCIDMWL+SHSDCPLCRAPV A GLSQHQ  AEQ+ENSGHGLLESGDLV
Sbjct: 121 LPRCTHMFHASCIDMWLFSHSDCPLCRAPVVAQGLSQHQAMAEQEENSGHGLLESGDLV 178

[Close]

BLAST of HG10007275 vs. NCBI nr
Match: KAG6590024.1 (RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023686.1 RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 152/183 (83.06%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  FAQPTSHPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSF+FKKGS  AA AAAEEEGNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAATAAAEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESG 180
           EVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ESG
Sbjct: 121 EVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of HG10007275 vs. NCBI nr
Match: XP_022960602.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 153/183 (83.61%), Postives = 160/183 (87.43%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  FAQPTSHPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSF+FKKGS  AAAAAAEEEGNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS--AAAAAAEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESG 180
           EVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ESG
Sbjct: 121 EVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of HG10007275 vs. NCBI nr
Match: XP_023516728.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.8e-74
Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  FAQPT+HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAA-AEEEGNGNECAVCLSAFEDG 120
           LAG+YAEM+NSSRS QSS    LCSF+FKKGS  AAAAA  EEEGNGNEC VCLSAFE+G
Sbjct: 61  LAGNYAEMVNSSRSLQSSNRNLLCSFKFKKGSAAAAAAAVVEEEGNGNECVVCLSAFEEG 120

Query: 121 EEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLES 180
           EEVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ES
Sbjct: 121 EEVKKLPRCMHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTVAEQQGNSGHGLPES 180

[Close]

BLAST of HG10007275 vs. NCBI nr
Match: XP_022987479.1 (E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima])

HSP 1 Score: 288.1 bits (736), Expect = 5.2e-74
Identity = 149/183 (81.42%), Postives = 158/183 (86.34%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  F+QPT+HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSF+FKKGS   AAAA EEEGNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS---AAAAVEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESG 180
           EVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ESG
Sbjct: 121 EVKKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of HG10007275 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-16
Identity = 64/169 (37.87%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYN--FIVIKWCSDNRHRRAS 60
           M +SSS+S   P S PA     M   G+  V    IV       F++++   D R R  +
Sbjct: 12  MDESSSSSSPSPVSAPA-GQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVT 71

Query: 61  PALAGSYAEMMNSSRSFQSS-------------LCSFEFKKGSTVAAAAAA----EEEGN 120
                         R   S              L S      S   AAAAA    EE+ +
Sbjct: 72  TTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDD 131

Query: 121 GNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPV 151
           G ECAVCL+  EDGEE + LPRC H FHA C+DMWL SHS CPLCR  V
Sbjct: 132 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 179

[Close]

BLAST of HG10007275 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-15
Identity = 59/178 (33.15%), Postives = 88/178 (49.44%), Query Frame = 0


Query: 9   FAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPALAGSYAEM 68
           F    S  + SS   L   L+ + T+A++LV Y  ++ K+C  +RH + S   +     +
Sbjct: 42  FLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYC--HRHHQTS---SSETLNL 101

Query: 69  MNSSRSFQSSL---------CSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVK 128
            ++   F SS           +    K  TV    + +   +G++C+VCLS FE+ E ++
Sbjct: 102 NHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLR 161

Query: 129 KLPRCTHMFHASCIDMWLYSHSDCPLCRA-------PVAASGLSQHQTTAEQQENSGH 171
            LP+C H FH  CID WL SHS+CPLCRA       P A+ G +     A  Q NS H
Sbjct: 162 LLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVA-NQSNSAH 213

[Close]

BLAST of HG10007275 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.3e-15
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 73  RSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASC 132
           RS  +S+    FKKG  +          +G EC+VCL+ FE+ E ++ LP+C+H FH +C
Sbjct: 112 RSAINSITVVGFKKGEGII---------DGTECSVCLNEFEEDESLRLLPKCSHAFHLNC 171

Query: 133 IDMWLYSHSDCPLCRAPVAASGLSQHQTT 162
           ID WL SH +CPLCRAPV       HQ T
Sbjct: 172 IDTWLLSHKNCPLCRAPVLLITEPPHQET 191

[Close]

BLAST of HG10007275 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-15
Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 6   STSFAQPTSHPAKSS---LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD-------NRHR 65
           ST+F  P      SS    P+L   ++ +   A +LV Y   VIK C +        R R
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RAS---PALAGSYAEMMNS-SRSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSA 125
           R+S   P +  S  E+      S   ++  F+FKK   V  A   ++  N  EC+VCL+ 
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNE 142

Query: 126 FEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPV---AASGLSQHQTTAEQQENS 178
           F++ E+++ +P C H+FH  CID+WL  +++CPLCR  V   A+  L      +  +ENS
Sbjct: 143 FQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENS 202

[Close]

BLAST of HG10007275 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-14
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 91  AAAAAAEEEGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCR--- 150
           + + AA EEG+  ECA+CL+ F DGEE++ LP C H FH  CID WL S S CP CR   
Sbjct: 88  STSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRIL 147

Query: 151 APVAASGLSQHQTTAEQQENS 169
            PV       H +TAE ++ +
Sbjct: 148 TPVRCDRCG-HASTAEMKDQA 167

[Close]

BLAST of HG10007275 vs. ExPASy TrEMBL
Match: A0A6J1H7W2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.8e-76
Identity = 153/183 (83.61%), Postives = 160/183 (87.43%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  FAQPTSHPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNYFAQPTSHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSF+FKKGS  AAAAAAEEEGNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS--AAAAAAEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESG 180
           EVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ESG
Sbjct: 121 EVKKLPRCMHMFHACCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of HG10007275 vs. ExPASy TrEMBL
Match: A0A6J1JJ05 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 149/183 (81.42%), Postives = 158/183 (86.34%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDS+S  F+QPT+HPAKSSLPMLYYGLVV+GTAAIVLVLYNFIVI WCSDNR  RASPA
Sbjct: 1   MSDSASNHFSQPTNHPAKSSLPMLYYGLVVIGTAAIVLVLYNFIVIMWCSDNRRGRASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRS QSS    LCSF+FKKGS   AAAA EEEGNGNEC VCLSAFE+GE
Sbjct: 61  LAGSYAEMVNSSRSLQSSNRNLLCSFKFKKGS---AAAAVEEEGNGNECVVCLSAFEEGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQTTAEQQENSGHGLLESG 180
           EVKKLPRC HMFHA CIDMWL+SH DCPLCRAPVA  GLS+ QT AEQQ NSGHGL ESG
Sbjct: 121 EVKKLPRCLHMFHARCIDMWLFSHCDCPLCRAPVAVPGLSKRQTAAEQQGNSGHGLPESG 180

[Close]

BLAST of HG10007275 vs. ExPASy TrEMBL
Match: A0A6J1HZG2 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.1e-72
Identity = 147/186 (79.03%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           M DS+ST  AQPTSHPAKSSLPMLYYGLVV+GTA IVLVLYN I+IKWCSDN H +ASPA
Sbjct: 1   MGDSASTFIAQPTSHPAKSSLPMLYYGLVVIGTATIVLVLYNLIIIKWCSDNSHGQASPA 60

Query: 61  LAGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGE 120
           LAGSYAEM+NSSRSFQSS    L SF+FKKGST  A A  EEEG GNECAVCLSAFEDGE
Sbjct: 61  LAGSYAEMVNSSRSFQSSNRNLLSSFKFKKGSTAKATATIEEEGIGNECAVCLSAFEDGE 120

Query: 121 EVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQT---TAEQQENSGHGLL 180
           EVKKLPRCTHMFHA CIDMWLYSHSDCPLCRAP  A  L Q  T    AEQQ NSGHGLL
Sbjct: 121 EVKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPAMAPALCQRHTAEDAAEQQVNSGHGLL 180

[Close]

BLAST of HG10007275 vs. ExPASy TrEMBL
Match: A0A6J1D0Z7 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016600 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.7e-70
Identity = 150/183 (81.97%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 2   SDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPAL 61
           S SSST F QPT HPAKSSLPMLYYGLVVVGTAAIVLV+YNFIVI+WCSD R  R SP +
Sbjct: 4   SYSSSTPFTQPTPHPAKSSLPMLYYGLVVVGTAAIVLVVYNFIVIRWCSD-RRGRGSPGM 63

Query: 62  AGSYAEMMNSSRSFQSS----LCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEE 121
           A SYAEMM+SS SFQSS    L SF FKKG T AAAA AEEEGNG ECAVCLSAFEDGEE
Sbjct: 64  ARSYAEMMSSSGSFQSSSRNLLSSFRFKKG-TKAAAATAEEEGNGLECAVCLSAFEDGEE 123

Query: 122 VKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVA-ASGLSQHQTTAEQQENSGHGLLESG 180
           VKKLPRCTHMFHA CIDMWLYSHSDCPLCRAPVA A GL QH T AEQ ENSGHGLLESG
Sbjct: 124 VKKLPRCTHMFHAPCIDMWLYSHSDCPLCRAPVALAPGLCQHHTAAEQPENSGHGLLESG 183

[Close]

BLAST of HG10007275 vs. ExPASy TrEMBL
Match: A0A5A7UKT6 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001780 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.6e-67
Identity = 142/175 (81.14%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MSDSSSTSFAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPA 60
           MSDSS++     T HPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD+RHRR    
Sbjct: 1   MSDSSTS-----TPHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDSRHRR---R 60

Query: 61  LAGSYAEMMNSSRSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVKK 120
           +A SY EMMNSSRSFQSSL SF+FKK   VAAA A  EEGNGNECAVCLSAFEDGEEVKK
Sbjct: 61  MAVSYEEMMNSSRSFQSSLSSFKFKK---VAAATATAEEGNGNECAVCLSAFEDGEEVKK 120

Query: 121 LPRCTHMFHASCIDMWLYSHSDCPLCRAPVAASGLSQHQ-TTAEQQENSGHGLLE 175
           LPRCTH FHASCIDMWLYSHSDCPLCRAPVA  G+S+H+ TTAEQ ENSGH LLE
Sbjct: 121 LPRCTHTFHASCIDMWLYSHSDCPLCRAPVAVPGVSRHETTTAEQDENSGHVLLE 164

[Close]

BLAST of HG10007275 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 59/178 (33.15%), Postives = 88/178 (49.44%), Query Frame = 0


Query: 9   FAQPTSHPAKSSLPMLYYGLVVVGTAAIVLVLYNFIVIKWCSDNRHRRASPALAGSYAEM 68
           F    S  + SS   L   L+ + T+A++LV Y  ++ K+C  +RH + S   +     +
Sbjct: 42  FLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYC--HRHHQTS---SSETLNL 101

Query: 69  MNSSRSFQSSL---------CSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVK 128
            ++   F SS           +    K  TV    + +   +G++C+VCLS FE+ E ++
Sbjct: 102 NHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLR 161

Query: 129 KLPRCTHMFHASCIDMWLYSHSDCPLCRA-------PVAASGLSQHQTTAEQQENSGH 171
            LP+C H FH  CID WL SHS+CPLCRA       P A+ G +     A  Q NS H
Sbjct: 162 LLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVA-NQSNSAH 213

[Close]

BLAST of HG10007275 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-16
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 73  RSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASC 132
           RS  +S+    FKKG  +          +G EC+VCL+ FE+ E ++ LP+C+H FH +C
Sbjct: 112 RSAINSITVVGFKKGEGII---------DGTECSVCLNEFEEDESLRLLPKCSHAFHLNC 171

Query: 133 IDMWLYSHSDCPLCRAPVAASGLSQHQTT 162
           ID WL SH +CPLCRAPV       HQ T
Sbjct: 172 IDTWLLSHKNCPLCRAPVLLITEPPHQET 191

[Close]

BLAST of HG10007275 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-16
Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 0


Query: 6   STSFAQPTSHPAKSS---LPMLYYGLVVVGTAAIVLVLYNFIVIKWCSD-------NRHR 65
           ST+F  P      SS    P+L   ++ +   A +LV Y   VIK C +        R R
Sbjct: 23  STTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRR 82

Query: 66  RAS---PALAGSYAEMMNS-SRSFQSSLCSFEFKKGSTVAAAAAAEEEGNGNECAVCLSA 125
           R+S   P +  S  E+      S   ++  F+FKK   V  A   ++  N  EC+VCL+ 
Sbjct: 83  RSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVV--AGEEDQSKNSQECSVCLNE 142

Query: 126 FEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPV---AASGLSQHQTTAEQQENS 178
           F++ E+++ +P C H+FH  CID+WL  +++CPLCR  V   A+  L      +  +ENS
Sbjct: 143 FQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENS 202

[Close]

BLAST of HG10007275 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 91  AAAAAAEEEGNGNECAVCLSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCR--- 150
           + + AA EEG+  ECA+CL+ F DGEE++ LP C H FH  CID WL S S CP CR   
Sbjct: 88  STSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRIL 147

Query: 151 APVAASGLSQHQTTAEQQENS 169
            PV       H +TAE ++ +
Sbjct: 148 TPVRCDRCG-HASTAEMKDQA 167

[Close]

BLAST of HG10007275 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-15
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 0


Query: 12  PTSHPAKS---SLPMLYYGLVVVGTAAIVLVLYNFIVIKWC------------SDNRHRR 71
           P  H A S   S P+L   ++ +   A +LV Y   VIK C            S +R RR
Sbjct: 22  PIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRR 81

Query: 72  ASPALAGSYAEMMNS---SRSFQSSLCSFEFKK-----GSTVAAAAAAEEEGNGNECAVC 131
                   Y+  + S     S   ++  F+FKK               EEE    EC+VC
Sbjct: 82  NDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVC 141

Query: 132 LSAFEDGEEVKKLPRCTHMFHASCIDMWLYSHSDCPLCRAPVA 152
           LS F+D E+++ +P C+H+FH  CID+WL ++++CPLCR  V+
Sbjct: 142 LSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS 184

The following BLAST results are available for this feature:

BLAST of HG10007275 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879803.1	1.2e-86	93.30	RING-H2 finger protein ATL39-like [Benincasa hispida]	[more]
KAG6590024.1	1.5e-76	83.06	RING-H2 finger protein ATL1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022960602.1	1.6e-75	83.61	E3 ubiquitin-protein ligase EL5-like [Cucurbita moschata]	[more]
XP_023516728.1	1.8e-74	81.52	E3 ubiquitin-protein ligase EL5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022987479.1	5.2e-74	81.42	E3 ubiquitin-protein ligase EL5-like [Cucurbita maxima]	[more]

BLAST of HG10007275 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRB7	3.9e-16	37.87	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9LF64	1.9e-15	33.15	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LX93	4.3e-15	44.94	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
P93823	7.4e-15	32.49	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
O22755	4.8e-14	46.91	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of HG10007275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7W2	7.8e-76	83.61	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111461337...	[more]
A0A6J1JJ05	2.5e-74	81.42	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111485020 P...	[more]
A0A6J1HZG2	3.1e-72	79.03	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111467629 P...	[more]
A0A6J1D0Z7	3.7e-70	81.97	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101660...	[more]
A0A5A7UKT6	6.6e-67	81.14	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of HG10007275 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	1.4e-16	33.15	RING/U-box superfamily protein	[more]
AT5G10380.1	3.1e-16	44.94	RING/U-box superfamily protein	[more]
AT1G04360.1	5.2e-16	32.49	RING/U-box superfamily protein	[more]
AT2G17450.1	3.4e-15	46.91	RING-H2 finger A3A	[more]
AT5G43420.1	5.8e-15	33.13	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 e-value: 5.0E-6 score: 36.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 103..147 e-value: 1.4E-13 score: 50.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..147 score: 12.223724
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..154 e-value: 2.4E-21 score: 76.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..179
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 6..174
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 97..151
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 6..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007275.1	HG10007275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane