HG10007232 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007232
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Prenylated rab acceptor PRA1
Location	Chr10: 2791921 .. 2793348 (-)
RNA-Seq Expression	HG10007232
Synteny	HG10007232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGTTATTTATGGAGGAAGTACGCGGATTATGTGTACACCAAATGGGAAAGAACGATTCTCTGGGATATGGTCGATCCCTATAGGCGACCCAAATCCTTTACGCCTTTGGTTTCCATTTATATTGCTGCTTTTTACACTGGGGTCGTCGGCGCTGCCATTACTGAGCAACTCTACAAGGTAATTTATCTACTGTTGCTTCCATTTTTTTTCCCTTCTTATACAATTTGTTGTTTAACTTGAGCCTGTTTATGTAATTGAAGTTGCTTTTGATTCTGTTCAATTGACGAATTGAGCCGATTGGAATAGAAGAAAGATTGGTTGTTTTCCCATTTTGTTCACTCCTTAGTTTGTGACAGAATGGTGCTCACAATTAAAGACTCTTAAGTAATATTAAAATGGTAAGATGAGTTTAGGTCAACGGTAATTGTCATACACTCGCTCCATTAAGGTTGGAAGTGGTTGAAATAGTTTCAAGAATGTTAGAATTTAGTCCTATGGTTTGATAAAATCCTACTATTTATGAAGATTTTATCAAAGTAGAGGGACTATTTGAGGTTTTACCAAACCATAAGGATTAAATCTAACTTTTAAAATCATAGGGACTAAACTTCAACTTTCTCCAAATCATAGGGACTAAATTTACAATTTAACCTAAAAAAAATGTGTAAAACATTGAAAATTAAAATGAATGGGACTAAATTAGAGAGTGAAACATGGTATAATTATAGAGTTTTTAGAGATATGAGGAGGGGTTGTGGGAGGTGCTTAGGTTTTAATTGTTTGTTATGGCTTATGCGGTTAAGATTTTTTTTTTTGTAATTATCATCTAGGTTTAATTCTTTTAATTTTTAGTCCTTCCTTTTAGTTCATCGGACTCCCTTTTTTTATGGGGCTATTCTTTTTTGTATGTCATGTTCTTTCATTTATTAAGAACATATATTTGATATTTGAAGCTTGGTTTCTTATCCAAAGAAAAAAAAGTGAAATATTGGTTGAACCATGTCTTATGATCATTTTAGGAACATAAAGGCACTTTGAAATATGTCTTAATATCATTTAAAATAAAATAAAATAAAAAAGTGAAATATTGTTTGAACCATGTCTTATGATCATTTTAGGAACATAAAGGCACTTTGAAACATGTCTTAATATCATTTAAAATCAATTTAATGTTTGGTTTTTCACTTTTAAACATGATTAAAATTGATTTTGAATGATTAAGAATACATTTTAGATTGATTTTGAACATGCCTTAAAAACATCATTTGTGCGAGCTATATCATCCTCTGCAATCCTTATCAAAATGTGCAGGAAAAGTATTGGGAAGATCACCCTGGGGAAGCTGTTCCTTTAATGAAACCAAAGTTTTATTATGGACCCTGGAGGGTAATGAGGGGAGAAGTCCCTGCACACACGAAGTGA

mRNA sequence

ATGGCGAGTTATTTATGGAGGAAGTACGCGGATTATGTGTACACCAAATGGGAAAGAACGATTCTCTGGGATATGGTCGATCCCTATAGGCGACCCAAATCCTTTACGCCTTTGGTTTCCATTTATATTGCTGCTTTTTACACTGGGGTCGTCGGCGCTGCCATTACTGAGCAACTCTACAAGGAAAAGTATTGGGAAGATCACCCTGGGGAAGCTGTTCCTTTAATGAAACCAAAGTTTTATTATGGACCCTGGAGGGTAATGAGGGGAGAAGTCCCTGCACACACGAAGTGA

Coding sequence (CDS)

ATGGCGAGTTATTTATGGAGGAAGTACGCGGATTATGTGTACACCAAATGGGAAAGAACGATTCTCTGGGATATGGTCGATCCCTATAGGCGACCCAAATCCTTTACGCCTTTGGTTTCCATTTATATTGCTGCTTTTTACACTGGGGTCGTCGGCGCTGCCATTACTGAGCAACTCTACAAGGAAAAGTATTGGGAAGATCACCCTGGGGAAGCTGTTCCTTTAATGAAACCAAAGTTTTATTATGGACCCTGGAGGGTAATGAGGGGAGAAGTCCCTGCACACACGAAGTGA

Protein sequence

MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK

Homology

[Close]

BLAST of HG10007232 vs. NCBI nr
Match: XP_038878275.1 (uncharacterized protein At4g29660 [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 6.7e-52
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. NCBI nr
Match: XP_022147559.1 (uncharacterized protein At4g29660 [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYSGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. NCBI nr
Match: KAG6589991.1 (hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1   MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
           MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 265 MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 324

Query: 61  KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
           KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 325 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 361

[Close]

BLAST of HG10007232 vs. NCBI nr
Match: XP_022961093.1 (uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharacterized protein At4g29660 [Cucurbita maxima] >XP_023516486.1 uncharacterized protein At4g29660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-50
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. NCBI nr
Match: XP_008450847.1 (PREDICTED: uncharacterized protein At4g29660 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 8.2e-50
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWE+T+LWDM+DPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. ExPASy Swiss-Prot
Match: Q94K18 (Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-37
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3  SYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKE 62
          S LWRKYADY Y K+ER  +W+M++PYRRPK+FT L++IY+AAFYTGV+GAA+TEQLYKE
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKE 65

Query: 63 KYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPA 95
          K+WE+HPG+ VPLMKP FY GPWRV RGE  A
Sbjct: 66 KFWEEHPGKTVPLMKPVFYRGPWRVYRGEAIA 97

[Close]

BLAST of HG10007232 vs. ExPASy TrEMBL
Match: A0A6J1D1D0 (uncharacterized protein At4g29660 OS=Momordica charantia OX=3673 GN=LOC111016456 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.5e-52
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFY+GVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYSGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. ExPASy TrEMBL
Match: A0A6J1JKR6 (uncharacterized protein At4g29660 OS=Cucurbita maxima OX=3661 GN=LOC111485319 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.0e-51
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. ExPASy TrEMBL
Match: A0A6J1HAW0 (uncharacterized protein At4g29660 OS=Cucurbita moschata OX=3662 GN=LOC111461707 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.0e-51
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWERTILWDMVDPYRRPKSFTPLV+IYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWERTILWDMVDPYRRPKSFTPLVTIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGE VPLMKPKFYYGPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEDVPLMKPKFYYGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. ExPASy TrEMBL
Match: A0A1S3BPK6 (uncharacterized protein At4g29660 OS=Cucumis melo OX=3656 GN=LOC103492316 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.0e-50
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY+YTKWE+T+LWDM+DPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLYTKWEKTLLWDMIDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. ExPASy TrEMBL
Match: A0A0A0M1X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587420 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.8e-50
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60
          MASYLWRKYADY++TKWE+T+LWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY
Sbjct: 1  MASYLWRKYADYLFTKWEKTLLWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLY 60

Query: 61 KEKYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPAHTK 98
          KEKYWEDHPGEAVPLMKPKFY GPWRVMRGEVPAHTK
Sbjct: 61 KEKYWEDHPGEAVPLMKPKFYTGPWRVMRGEVPAHTK 97

[Close]

BLAST of HG10007232 vs. TAIR 10
Match: AT4G29660.1 (embryo defective 2752 )

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-38
Identity = 66/92 (71.74%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 3  SYLWRKYADYVYTKWERTILWDMVDPYRRPKSFTPLVSIYIAAFYTGVVGAAITEQLYKE 62
          S LWRKYADY Y K+ER  +W+M++PYRRPK+FT L++IY+AAFYTGV+GAA+TEQLYKE
Sbjct: 6  SQLWRKYADYKYNKFERFAVWEMIEPYRRPKTFTTLITIYVAAFYTGVIGAAVTEQLYKE 65

Query: 63 KYWEDHPGEAVPLMKPKFYYGPWRVMRGEVPA 95
          K+WE+HPG+ VPLMKP FY GPWRV RGE  A
Sbjct: 66 KFWEEHPGKTVPLMKPVFYRGPWRVYRGEAIA 97

The following BLAST results are available for this feature:

BLAST of HG10007232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878275.1	6.7e-52	100.00	uncharacterized protein At4g29660 [Benincasa hispida]	[more]
XP_022147559.1	2.0e-51	98.97	uncharacterized protein At4g29660 [Momordica charantia]	[more]
KAG6589991.1	1.7e-50	96.91	hypothetical protein SDJN03_15414, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961093.1	1.7e-50	96.91	uncharacterized protein At4g29660 [Cucurbita moschata] >XP_022987918.1 uncharact...	[more]
XP_008450847.1	8.2e-50	94.85	PREDICTED: uncharacterized protein At4g29660 [Cucumis melo]	[more]

BLAST of HG10007232 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K18	2.2e-37	71.74	Uncharacterized protein At4g29660 OS=Arabidopsis thaliana OX=3702 GN=EMB2752 PE=...	[more]

BLAST of HG10007232 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1D0	9.5e-52	98.97	uncharacterized protein At4g29660 OS=Momordica charantia OX=3673 GN=LOC111016456...	[more]
A0A6J1JKR6	8.0e-51	96.91	uncharacterized protein At4g29660 OS=Cucurbita maxima OX=3661 GN=LOC111485319 PE...	[more]
A0A6J1HAW0	8.0e-51	96.91	uncharacterized protein At4g29660 OS=Cucurbita moschata OX=3662 GN=LOC111461707 ...	[more]
A0A1S3BPK6	4.0e-50	94.85	uncharacterized protein At4g29660 OS=Cucumis melo OX=3656 GN=LOC103492316 PE=4 S...	[more]
A0A0A0M1X3	8.8e-50	94.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587420 PE=4 SV=1	[more]

BLAST of HG10007232 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29660.1	1.5e-38	71.74	embryo defective 2752	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037759	Uncharacterized protein At4g29660-like	PANTHER	PTHR37898	OS05G0540200 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007232.1	HG10007232.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane