HG10006758 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006758
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Profilin
Location	Chr07: 21745808 .. 21747320 (-)
RNA-Seq Expression	HG10006758
Synteny	HG10006758

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTGGCAAACGTATGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGGTTTCCATCCTCCTTCCTCTCTGTTTCTCATTTTTTTTTTTAAATTTCTGTATTCGTCTTCGGCTTCTAGATTGGATAATTTTAGCATCGCTGTAATTTTAGGGCGTTAATTCGTTGTTATGCATCGTGATCTTTGATCGTATGGAATAACGATAGATGTATTTATAGGTTATGTGTAAATTCTGATCTATTGATTGATTGTTGGATGTTTAGATCTGGTTGTTGCGTGATAGAACTATAGGTTAAATTTGGATGGAGAAGTAACTTAAGCTATTCATATCTTGTTCTCTCTGCGGTAATGGAATTTTTGTGTCATTAATAGAGAGGATAAATGATACTGTTAATTTCTTTGGTTTTTCATCAATTGTGCATCGTAATTTAAATCATTAAATGTTGATCTGAAGAGGTTTCTGATTGATTCCTCTTGTGTTTGAATTCGTTTACATGATGGATTAATTGTTCTGATCAATGTGTAAATTAAATGTTGATTTCAAGAAGATTCTAGTTGATTTTCTTATTATGGATTCTTAATTGCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGTGATGTAAAACATCATGAATGAAATCTGCACATTTTTGGATTATTGATTCCTATCACTTTTTCATTCCACTATGACCATCATTGGTACAAAATACAACTGATAATACTTACATTACATGAACCAGTGACATAATAAGATTTTGTGTCAATATGATCTTGATTTGTGAGTTCCAACAGGGGTCTGTTATGTAATAGTAATTGTTGATACCTCAAGAATTTTGAAAGGCTCAGAAGTGACAGCTAAAACTTAATTAATTGATCATCTACTAAAGAAATGAAATTTGATCTTGAAAATTCCTAGCTGCATATGGGGTTGTTACATTGTCATACAGTTATTGCCTAATTGGCATATACTCCTTCTCTTTAAGTTTGAGGTTTGCATTGTGAGTTCACATTTATATCGAATGGTATGAGTTATAGGATAGTTCAACGATTTCTCTTTACAAGTATTATGATTCTGTTATGAGATTGATAGCTATATTGTGGTAAACATGGTGAAATAAATCCTTTGCTTATATCAATCTATGGACTCAAGTCTGTTAAATTTCTCTTGTTTTGGATTCTTTGTGGCAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG

mRNA sequence

ATGTCGTGGCAAACGTATGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG

Coding sequence (CDS)

ATGTCGTGGCAAACGTATGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTCGTCGATCAGGGTCTGTAG

Protein sequence

MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL

Homology

[Close]

BLAST of HG10006758 vs. NCBI nr
Match: XP_038890820.1 (profilin-4 [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 6.1e-72
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAI+GHDGSVWAQSASFPQFK EEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSASFPQFKSEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGIT+KKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. NCBI nr
Match: XP_022154694.1 (profilin-4 [Momordica charantia])

HSP 1 Score: 280.8 bits (717), Expect = 6.1e-72
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTA+AI+GHDGSVWAQS+SFPQFKP+EITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. NCBI nr
Match: XP_008458981.1 (PREDICTED: profilin-4 [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 1.8e-71
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAI+GHDGSVWAQSASFPQFK EEI GIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSASFPQFKSEEINGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. NCBI nr
Match: XP_023547012.1 (profilin-4 [Cucurbita pepo subsp. pepo] >XP_023547256.1 profilin-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 6.8e-71
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQS SFPQ+KPEEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSTSFPQYKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           +LAPTGLHL GTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  YLAPTGLHLAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. NCBI nr
Match: XP_038695731.1 (profilin-4 [Tripterygium wilfordii] >XP_038712272.1 profilin-4 [Tripterygium wilfordii] >KAF5726028.1 profilin-4 [Tripterygium wilfordii] >KAF5743017.1 profilin-4 [Tripterygium wilfordii])

HSP 1 Score: 276.9 bits (707), Expect = 8.8e-71
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAI+GHDGSVWAQS++FPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSSTFPQIKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGG+TIKKT QALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTSQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy Swiss-Prot
Match: A4KA45 (Profilin-4 OS=Corylus avellana OX=13451 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.9e-71
Identity = 124/133 (93.23%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVD+HLMCDIDGQGQ L A+AI+GHDGSVWAQS+SFPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDEHLMCDIDGQGQQLAASAIVGHDGSVWAQSSSFPQLKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGE GAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL+DQGL
Sbjct: 121 VERLGDYLIDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy Swiss-Prot
Match: O49894 (Profilin OS=Mercurialis annua OX=3986 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.2e-71
Identity = 121/133 (90.98%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHL AA+I+GHDGS+WAQSASFPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLAAASIVGHDGSIWAQSASFPQLKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGL++ GTKYMVIQGE GAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLYIAGTKYMVIQGESGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL++QG+
Sbjct: 121 VERLGDYLIEQGM 133

[Close]

BLAST of HG10006758 vs. ExPASy Swiss-Prot
Match: A4K9Z8 (Profilin-2 OS=Betula pendula OX=3505 PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 122/133 (91.73%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVD+HLMCDIDGQGQ L A+AI+GHDGSVWAQS+SFPQFKP+EITGIMKDF+EPG
Sbjct: 1   MSWQTYVDEHLMCDIDGQGQQLAASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFEEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGG KYMVIQGE GAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL+DQGL
Sbjct: 121 VERLGDYLIDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy Swiss-Prot
Match: A4KA44 (Profilin-3 OS=Corylus avellana OX=13451 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-70
Identity = 123/133 (92.48%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQ YVD+HLMCDIDGQGQ L A+AI+GHDGSVWAQS+SFPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQAYVDEHLMCDIDGQGQQLAASAIVGHDGSVWAQSSSFPQLKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGE GAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLV+QGL
Sbjct: 121 VERLGDYLVEQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy Swiss-Prot
Match: A4KA39 (Profilin-1 OS=Corylus avellana OX=13451 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.5e-70
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQ YVD+HLMCDIDGQGQ L A+AI+GHDGSVWAQS+SFPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQAYVDEHLMCDIDGQGQQLAASAIVGHDGSVWAQSSSFPQLKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGE GAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL++QGL
Sbjct: 121 VERLGDYLLEQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy TrEMBL
Match: A0A6J1DMX1 (Profilin OS=Momordica charantia OX=3673 GN=LOC111021890 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.0e-72
Identity = 129/133 (96.99%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTA+AI+GHDGSVWAQS+SFPQFKP+EITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTASAIVGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy TrEMBL
Match: A0A1S3C988 (Profilin OS=Cucumis melo OX=3656 GN=LOC103498227 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 8.6e-72
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAI+GHDGSVWAQSASFPQFK EEI GIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSASFPQFKSEEINGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy TrEMBL
Match: A0A7J7BW29 (Profilin OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G01079 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.3e-71
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAI+GHDGSVWAQS++FPQ KPEEITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIVGHDGSVWAQSSTFPQIKPEEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGG+TIKKT QALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTSQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy TrEMBL
Match: A0A0A0LFT5 (Profilin OS=Cucumis sativus OX=3659 GN=Csa_2G000760 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 7.3e-71
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHL AAAI+GHDGSVWAQSASFPQFK +EI GIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLAAAAIVGHDGSVWAQSASFPQFKSDEINGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. ExPASy TrEMBL
Match: A0A6J1HQL6 (Profilin OS=Cucurbita maxima OX=3661 GN=LOC111465721 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSA+FPQ KP+EITGIMKDFDEPG
Sbjct: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSAAFPQCKPQEITGIMKDFDEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGLH+ GTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFG+YEEPVTPGQCNMV
Sbjct: 61  HLAPTGLHIAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYLVDQGL
Sbjct: 121 VERLGDYLVDQGL 133

[Close]

BLAST of HG10006758 vs. TAIR 10
Match: AT2G19770.1 (profilin 5 )

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-67
Identity = 115/134 (85.82%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDI-DGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEP 60
           MSWQ YVD+HLMCD+ DGQG HLTAAAIIGHDGSVWAQSA+FPQFKP+EIT IMKDFDEP
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEP 60

Query: 61  GHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNM 120
           GHLAPTG+ L G KYMVIQGEP AVIRGKKG+GGITIKKTGQ++VFG+YEEPVTPGQCNM
Sbjct: 61  GHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNM 120

Query: 121 VVERLGDYLVDQGL 134
           VVERLGDYL++QGL
Sbjct: 121 VVERLGDYLIEQGL 134

[Close]

BLAST of HG10006758 vs. TAIR 10
Match: AT4G29340.1 (profilin 4 )

HSP 1 Score: 248.8 bits (634), Expect = 2.4e-66
Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDI-DGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEP 60
           MSWQTYVD+HLMCD+ DGQG HLTAAAI+GHDGSVWAQSA+FPQFK +E + IMKDFDEP
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEP 60

Query: 61  GHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNM 120
           GHLAPTGL + G KYMVIQGEPGAVIRGKKG+GGITIKKTGQ+ VFGIYEEPVTPGQCNM
Sbjct: 61  GHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNM 120

Query: 121 VVERLGDYLVDQGL 134
           VVERLGDYL++QGL
Sbjct: 121 VVERLGDYLLEQGL 134

[Close]

BLAST of HG10006758 vs. TAIR 10
Match: AT2G19760.1 (profilin 1 )

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-58
Identity = 103/133 (77.44%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQ+YVDDHLMCD+  +G HLTAAAI+G DGSVWAQSA FPQ KP+EI GI KDF+EPG
Sbjct: 1   MSWQSYVDDHLMCDV--EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
            LAPTGL LGG KYMVIQGE GAVIRGKKG GG+TIKKT QALVFG Y+EP+T GQCN+V
Sbjct: 61  FLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL++  L
Sbjct: 121 VERLGDYLIESEL 131

[Close]

BLAST of HG10006758 vs. TAIR 10
Match: AT4G29350.1 (profilin 2 )

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-57
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQ+YVDDHLMC++  +G HLT AAI G DGSVWAQS++FPQ KP EI GI KDF+E G
Sbjct: 1   MSWQSYVDDHLMCEV--EGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAG 60

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
           HLAPTGL LGG KYMV+QGE GAVIRGKKG GG+TIKKT QALVFGIY+EP+T GQCN+V
Sbjct: 61  HLAPTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLV 120

Query: 121 VERLGDYLVDQGL 134
           VERLGDYL++ GL
Sbjct: 121 VERLGDYLIESGL 131

[Close]

BLAST of HG10006758 vs. TAIR 10
Match: AT5G56600.1 (profilin 3 )

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-56
Identity = 102/133 (76.69%), Postives = 112/133 (84.21%), Query Frame = 0


Query: 1   MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSASFPQFKPEEITGIMKDFDEPG 60
           MSWQTYVDDHLMCD+   G  LTAAAI+G DGSVWAQS +FPQ KPEEI GI  DF  PG
Sbjct: 38  MSWQTYVDDHLMCDV--AGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPG 97

Query: 61  HLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMV 120
            LAPTGL LGG KYMVIQGEP AVIRGKKG+GG+TIKKT  ALVFGIY+EP+TPGQCNMV
Sbjct: 98  TLAPTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMV 157

Query: 121 VERLGDYLVDQGL 134
           VE LG+YL++ GL
Sbjct: 158 VENLGEYLIESGL 168

The following BLAST results are available for this feature:

BLAST of HG10006758 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890820.1	6.1e-72	97.74	profilin-4 [Benincasa hispida]	[more]
XP_022154694.1	6.1e-72	96.99	profilin-4 [Momordica charantia]	[more]
XP_008458981.1	1.8e-71	97.74	PREDICTED: profilin-4 [Cucumis melo]	[more]
XP_023547012.1	6.8e-71	96.99	profilin-4 [Cucurbita pepo subsp. pepo] >XP_023547256.1 profilin-4 [Cucurbita pe...	[more]
XP_038695731.1	8.8e-71	95.49	profilin-4 [Tripterygium wilfordii] >XP_038712272.1 profilin-4 [Tripterygium wil...	[more]

BLAST of HG10006758 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4KA45	1.9e-71	93.23	Profilin-4 OS=Corylus avellana OX=13451 PE=1 SV=1	[more]
O49894	9.2e-71	90.98	Profilin OS=Mercurialis annua OX=3986 PE=1 SV=1	[more]
A4K9Z8	1.2e-70	91.73	Profilin-2 OS=Betula pendula OX=3505 PE=1 SV=1	[more]
A4KA44	1.6e-70	92.48	Profilin-3 OS=Corylus avellana OX=13451 PE=1 SV=1	[more]
A4KA39	3.5e-70	91.73	Profilin-1 OS=Corylus avellana OX=13451 PE=1 SV=1	[more]

BLAST of HG10006758 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMX1	3.0e-72	96.99	Profilin OS=Momordica charantia OX=3673 GN=LOC111021890 PE=3 SV=1	[more]
A0A1S3C988	8.6e-72	97.74	Profilin OS=Cucumis melo OX=3656 GN=LOC103498227 PE=3 SV=1	[more]
A0A7J7BW29	4.3e-71	95.49	Profilin OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G01079 PE=3 SV=1	[more]
A0A0A0LFT5	7.3e-71	96.24	Profilin OS=Cucumis sativus OX=3659 GN=Csa_2G000760 PE=3 SV=1	[more]
A0A6J1HQL6	1.2e-70	95.49	Profilin OS=Cucurbita maxima OX=3661 GN=LOC111465721 PE=3 SV=1	[more]

BLAST of HG10006758 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19770.1	2.2e-67	85.82	profilin 5	[more]
AT4G29340.1	2.4e-66	85.07	profilin 4	[more]
AT2G19760.1	1.8e-58	77.44	profilin 1	[more]
AT4G29350.1	1.2e-57	75.94	profilin 2	[more]
AT5G56600.1	1.0e-56	76.69	profilin 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005455	Profilin	PRINTS	PR00392	PROFILIN	coord: 42..62 score: 63.21 coord: 66..80 score: 72.5 coord: 3..12 score: 76.25 coord: 102..115 score: 66.43 coord: 115..132 score: 73.06 coord: 23..32 score: 72.25
IPR005455	Profilin	PRINTS	PR01640	PROFILINPLNT	coord: 29..42 score: 84.03 coord: 73..82 score: 96.73 coord: 119..132 score: 83.64 coord: 54..68 score: 83.39 coord: 106..119 score: 87.01 coord: 1..14 score: 88.18 coord: 86..101 score: 87.05
IPR005455	Profilin	SMART	SM00392	prof_2	coord: 1..133 e-value: 1.7E-65 score: 233.6
IPR005455	Profilin	PFAM	PF00235	Profilin	coord: 1..132 e-value: 1.6E-43 score: 147.9
IPR005455	Profilin	PANTHER	PTHR11604	PROFILIN	coord: 1..133
IPR005455	Profilin	CDD	cd00148	PROF	coord: 2..132 e-value: 3.88613E-59 score: 176.747
None	No IPR available	GENE3D	3.30.450.30	Dynein light chain 2a, cytoplasmic	coord: 1..133 e-value: 3.3E-60 score: 203.9
None	No IPR available	PANTHER	PTHR11604:SF37	PROFILIN	coord: 1..133
IPR027310	Profilin conserved site	PROSITE	PS00414	PROFILIN	coord: 1..8
IPR036140	Profilin superfamily	SUPERFAMILY	55770	Profilin (actin-binding protein)	coord: 2..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006758.1	HG10006758.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042989	sequestering of actin monomers
cellular_component	GO:0005938	cell cortex
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003785	actin monomer binding
molecular_function	GO:0003779	actin binding