HG10006722 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006722
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 6
Location	Chr07: 21386801 .. 21387518 (-)
RNA-Seq Expression	HG10006722
Synteny	HG10006722

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCATCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCAGCCCTCCGCAGCTTCTACATCTCGTCGTCCTTGCACTTCGCGGTGAGACTTCTCTCTTTTCTCCATTTTCAATCTCATTCATCATTTCATCATTTCATCATTAGTTACAGAAAGAAATTCGGTTCAATTCTTTACTGTGGATTAGATTTTTACAATAGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCCATAGCTGCAGCAAGATTGATTTCAAGTTTAACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGGTATGTTTTGCTTAAGTTTTTTCTTGCACTTGGTTCTAGTGAATACTGATGATTCTTCATTATTGTTTTTGCTCGAGGAATGTTGCTAAGGAAGTGTTCCAAACATCCGTTTGTTTGTTCACACTTCATAGATTTTTTTTCCGTTAAACTAATGTCGGATGTTTTATAAATTTTAGGATATGATCATAGTTCGGTCTAGTTCAATGCATATGTCTTGGGGAATTCCAGTACGATTGAATGAATCGTCCTGTTGCTATTTGGATATTTAGCGATGTTGCTGCTTGCCTGTACTACTGGAATTGCCATCGCCTTTGAATTATGA

mRNA sequence

ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCATCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCAGCCCTCCGCAGCTTCTACATCTCGTCGTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCCATAGCTGCAGCAAGATTGATTTCAAGTTTAACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGCGATGTTGCTGCTTGCCTGTACTACTGGAATTGCCATCGCCTTTGAATTATGA

Coding sequence (CDS)

ATGGCGTCCTTAAAGGCAGTCTCTCGGTTATCATCTCGCTTGCAATCCCTCGCTCCAAAGTTCAACAAAAGATCTTCATCTTCTGAGCTATCTCCTTTCAAATCGACTTGTCAATCTCAGCCCTCCGCAGCTTCTACATCTCGTCGTCCTTGCACTTCGCGGTTACCAGTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCCATAGCTGCAGCAAGATTGATTTCAAGTTTAACCATTGAATCTCAAGGATGGGGTTTGGTTCCTCAGGCGATGTTGCTGCTTGCCTGTACTACTGGAATTGCCATCGCCTTTGAATTATGA

Protein sequence

MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAMLLLACTTGIAIAFEL

Homology

[Close]

BLAST of HG10006722 vs. NCBI nr
Match: XP_038889658.1 (uncharacterized protein LOC120079520 [Benincasa hispida])

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-35
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLK VSRLSSRLQSLAPKFNKRSS SELSPFKS CQSQPS ASTSR PCTSRLPVELS
Sbjct: 1  MASLKTVSRLSSRLQSLAPKFNKRSSYSELSPFKSPCQSQPSTASTSRLPCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. NCBI nr
Match: XP_004139345.1 (uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical protein Csa_019508 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. NCBI nr
Match: KAA0061549.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 7.2e-34
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
           MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAMLLLA 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M  L+
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFCLS 99

[Close]

BLAST of HG10006722 vs. NCBI nr
Match: XP_008458447.1 (PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQVM 95

[Close]

BLAST of HG10006722 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASL+AVSRLSSRLQSLAPK NKRS SSELSPFKS+CQSQPSAASTSR  CTSRLP+ELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.1e-35
Identity = 89/95 (93.68%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLKAVSRLSSRLQSLAPKFNKRSSSSEL  FKSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-34
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
           MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1   MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAMLLLA 100
           SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M  L+
Sbjct: 61  SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGMFCLS 99

[Close]

BLAST of HG10006722 vs. ExPASy TrEMBL
Match: A0A1S3C7Z3 (uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.9e-34
Identity = 88/95 (92.63%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ M
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQVM 95

[Close]

BLAST of HG10006722 vs. ExPASy TrEMBL
Match: A0A1S3C7U8 (uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497847 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASLKAVSRLSSRLQSL+PKFNKRSSSSEL   KSTCQSQPSAASTSR  CTSRLPVELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELSPFKSTCQSQPSAASTSRRPCTSRLPVELS 60
          MASL+AVSRLSSRLQSLAPK NKRS SSELSPFKS CQSQPSAASTSR  CTSRLP+ELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQ +
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGI 95

[Close]

BLAST of HG10006722 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVE 60
          MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR   + RLPVE
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAM 96
          LS   S++PLHSAIA+ARLISSL++ES+ WGLVPQ +
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQGI 93

[Close]

BLAST of HG10006722 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKFNKRS--SSSELSPFKSTCQSQPSAASTSRRPCTSRLPVE 60
          MAS   + RLSS++ SL  K +K +   SS  SP KS   S PS+A TSR   + RLPVE
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQ 94
          LS   S++PLHSAIA+ARLISSL++ES+ WGLVPQ
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQ 91

[Close]

BLAST of HG10006722 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 52/99 (52.53%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASLKAVSRLSSRLQSLAPKF-NKRSSSSEL-SPFKSTCQSQPSAASTSRRPCTSRLPVE 60
          MAS + + R SSRL+SL     NK ++ S L SP KS   + PS+A++ R   +SRLPVE
Sbjct: 1  MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKS---ASPSSATSCRLNRSSRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLTIESQGWGLVPQAMLL 98
          LS   S++PLHSAIA++RL+SSL++ES+ WGLVPQ + L
Sbjct: 61 LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQGLSL 93

The following BLAST results are available for this feature:

BLAST of HG10006722 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889658.1	8.5e-35	92.63	uncharacterized protein LOC120079520 [Benincasa hispida]	[more]
XP_004139345.1	1.9e-34	93.68	uncharacterized protein LOC101209110 [Cucumis sativus] >KGN60611.1 hypothetical ...	[more]
KAA0061549.1	7.2e-34	89.90	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK10723.1 protei...	[more]
XP_008458447.1	1.2e-33	92.63	PREDICTED: uncharacterized protein LOC103497847 isoform X2 [Cucumis melo]	[more]
XP_023547330.1	3.6e-33	89.47	uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331....	[more]

BLAST of HG10006722 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006722 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKT5	9.1e-35	93.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1	[more]
A0A5A7V7B3	3.5e-34	89.90	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C7Z3	5.9e-34	92.63	uncharacterized protein LOC103497847 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C7U8	1.7e-33	91.58	uncharacterized protein LOC103497847 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1G399	2.2e-33	89.47	uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]

BLAST of HG10006722 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55205.1	1.1e-13	55.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G55205.2	1.1e-13	56.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13674.1	4.4e-13	52.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..54
None	No IPR available	PANTHER	PTHR33156:SF43	BNAANNG28360D PROTEIN	coord: 1..96
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006722.1	HG10006722.1	mRNA