HG10006714 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006714
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 21311966 .. 21312328 (-)
RNA-Seq ExpressionHG10006714
SyntenyHG10006714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGTGGAGTGTGGAAAGATCCGATTGGTAGTCGTACAATTGTGTCGGGAGTTCACATAAGGATTGTAAGATGGATCCCGCCGGCGAGAGGATGGTTGAAGCTTAATGTTGACACGCCTTGTCACTTAAAAAACGCATCTCTTGGTATGGGCGTCGTTATTAAAAATGATAGAGGTGTGTTGGTAGCGACCCAAGCGTTGGTCCGCCTAGGGTATATGATGGCTGAAGCAGGGAAGTATTGGCAGTTGTTGACGGCGTCGCAAATGGTCAAGGCGCGCGACTGTGAAAATGTGCTGGTGGAGATGGATGTCGAAACTGTTGTGAAGAAGCTAATTGTCTTTTGCCTTATCTATATTTGA

mRNA sequence

ATGATGGGTGGAGTGTGGAAAGATCCGATTGGTAGTCGTACAATTGTGTCGGGAGTTCACATAAGGATTGTAAGATGGATCCCGCCGGCGAGAGGATGGTTGAAGCTTAATGTTGACACGCCTTGTCACTTAAAAAACGCATCTCTTGGTATGGGCGTCGTTATTAAAAATGATAGAGGTGTGTTGGTAGCGACCCAAGCGTTGGTCCGCCTAGGGTATATGATGGCTGAAGCAGGGAAGTATTGGCAGTTGTTGACGGCGTCGCAAATGGTCAAGGCGCGCGACTGTGAAAATGTGCTGGTGGAGATGGATGTCGAAACTGTTGTGAAGAAGCTAATTGTCTTTTGCCTTATCTATATTTGA

Coding sequence (CDS)

ATGATGGGTGGAGTGTGGAAAGATCCGATTGGTAGTCGTACAATTGTGTCGGGAGTTCACATAAGGATTGTAAGATGGATCCCGCCGGCGAGAGGATGGTTGAAGCTTAATGTTGACACGCCTTGTCACTTAAAAAACGCATCTCTTGGTATGGGCGTCGTTATTAAAAATGATAGAGGTGTGTTGGTAGCGACCCAAGCGTTGGTCCGCCTAGGGTATATGATGGCTGAAGCAGGGAAGTATTGGCAGTTGTTGACGGCGTCGCAAATGGTCAAGGCGCGCGACTGTGAAAATGTGCTGGTGGAGATGGATGTCGAAACTGTTGTGAAGAAGCTAATTGTCTTTTGCCTTATCTATATTTGA

Protein sequence

MMGGVWKDPIGSRTIVSGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVRLGYMMAEAGKYWQLLTASQMVKARDCENVLVEMDVETVVKKLIVFCLIYI
Homology
BLAST of HG10006714 vs. NCBI nr
Match: TYK21731.1 (hypothetical protein E5676_scaffold859G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0

Query: 11  GSRTIVSGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVR 70
           G++   +G   R+ +W P     LKLNV   CHL +   G+G+VI+ND+  LV   +L +
Sbjct: 66  GNQPNANGHRSRLQQWSPSVVSRLKLNVVVACHLLHDKFGVGIVIRNDKRRLVTVTSLCK 125

Query: 71  LGYMMAEAGKYWQLLTASQMVKARDCENVLVEMDVETVVK 111
           +G +  E G    LL   + +      N ++ MDVE VVK
Sbjct: 126 VGSLNVEVGGVMALLKGLRFIGDGGFLNNVIGMDVEVVVK 165

BLAST of HG10006714 vs. NCBI nr
Match: KAA0040106.1 (hypothetical protein E6C27_scaffold366G00810 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 17  SGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVRLGYMMA 76
           +G   R+ +W P     LKLNV   CHL +   G+G+VI+ND+  LV   +L ++G +  
Sbjct: 23  NGHRSRLQQWSPSVVSRLKLNVVVACHLLHDKFGVGIVIRNDKRRLVTVTSLCKVGSLNV 82

Query: 77  EAGKYWQLLTASQMVKARDCENVLVEMDVETVVK 111
           E G    LL   + +      N ++ MDVE VVK
Sbjct: 83  EVGGVMALLKELRFIGEGGFLNNVIGMDVEVVVK 116

BLAST of HG10006714 vs. NCBI nr
Match: XP_017256601.1 (PREDICTED: uncharacterized protein LOC108226171 [Daucus carota subsp. sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 27/93 (29.03%), Postives = 47/93 (50.54%), Query Frame = 0

Query: 17  SGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVRLGYMMA 76
           +GVH+   +W PP  GW+K+N+D  C   +  +G+G V++N+RG  +  +  +  G   A
Sbjct: 21  TGVHVHTRQWCPPPEGWIKINIDASCRQDSEYVGVGCVVRNERGEFLRARTTLVQGRSYA 80

Query: 77  EAGKYWQLLTASQMVKARDCENVLVEMDVETVV 110
              +   L  A   VK    +  + E D + +V
Sbjct: 81  REAEALSLKEALSWVKTWRTQKCIFESDAKLLV 113

BLAST of HG10006714 vs. NCBI nr
Match: KAE8649322.1 (hypothetical protein Csa_015048 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05
Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 0

Query: 18 GVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVRLGYMMAE 77
          G+ + I RW PP    LKLNVD    L    +G+G +I+N RG  VA +A  ++G   AE
Sbjct: 2  GIQMDIQRWSPPLADCLKLNVDVTGRLSGMRIGVGAIIRNKRGETVAAKATFQMGCGEAE 61

Query: 78 AGKYWQLLTASQMVKARDC 97
           G+   LL   Q V    C
Sbjct: 62 VGEVMALLKGLQFVGVICC 80

BLAST of HG10006714 vs. NCBI nr
Match: XP_031120971.1 (uncharacterized protein LOC116024211 [Ipomoea triloba])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 32/103 (31.07%), Postives = 52/103 (50.49%), Query Frame = 0

Query: 6   WKDPIGSRTIVSGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVAT 65
           WK     + + S    R  RW PP++G LKLN+D    + N+ +GMG VI++ +G  VA 
Sbjct: 838 WKGVNEGQVVQSTHDFRTERWSPPSQGRLKLNMDVAMSMNNSCMGMGWVIRDAQGHFVAA 897

Query: 66  QALVRLGYMMAEAGKYWQLLTASQMVKARDCENVLVEMDVETV 109
           +A    G+   +  +   +  A   +K  D  +V +E D + V
Sbjct: 898 KAKKFDGFFSVKEAEVVSIREALSWIKEMDIGDVDIETDSQLV 940

BLAST of HG10006714 vs. ExPASy TrEMBL
Match: A0A5D3DDI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001030 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.8e-07
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 0

Query: 11  GSRTIVSGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVR 70
           G++   +G   R+ +W P     LKLNV   CHL +   G+G+VI+ND+  LV   +L +
Sbjct: 66  GNQPNANGHRSRLQQWSPSVVSRLKLNVVVACHLLHDKFGVGIVIRNDKRRLVTVTSLCK 125

Query: 71  LGYMMAEAGKYWQLLTASQMVKARDCENVLVEMDVETVVK 111
           +G +  E G    LL   + +      N ++ MDVE VVK
Sbjct: 126 VGSLNVEVGGVMALLKGLRFIGDGGFLNNVIGMDVEVVVK 165

BLAST of HG10006714 vs. ExPASy TrEMBL
Match: A0A5A7TDE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00810 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 17  SGVHIRIVRWIPPARGWLKLNVDTPCHLKNASLGMGVVIKNDRGVLVATQALVRLGYMMA 76
           +G   R+ +W P     LKLNV   CHL +   G+G+VI+ND+  LV   +L ++G +  
Sbjct: 23  NGHRSRLQQWSPSVVSRLKLNVVVACHLLHDKFGVGIVIRNDKRRLVTVTSLCKVGSLNV 82

Query: 77  EAGKYWQLLTASQMVKARDCENVLVEMDVETVVK 111
           E G    LL   + +      N ++ MDVE VVK
Sbjct: 83  EVGGVMALLKELRFIGEGGFLNNVIGMDVEVVVK 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK21731.11.8e-0635.00hypothetical protein E5676_scaffold859G001030 [Cucumis melo var. makuwa][more]
KAA0040106.16.9e-0636.17hypothetical protein E6C27_scaffold366G00810 [Cucumis melo var. makuwa][more]
XP_017256601.11.5e-0529.03PREDICTED: uncharacterized protein LOC108226171 [Daucus carota subsp. sativus][more]
KAE8649322.15.8e-0539.24hypothetical protein Csa_015048 [Cucumis sativus][more]
XP_031120971.17.6e-0531.07uncharacterized protein LOC116024211 [Ipomoea triloba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DDI58.8e-0735.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDE13.3e-0636.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006714.1HG10006714.1mRNA