HG10006683 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006683
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 20989784 .. 20989954 (+)
RNA-Seq Expression	HG10006683
Synteny	HG10006683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA

mRNA sequence

ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA

Coding sequence (CDS)

ATGGTTCCCATTTCCAACTTATCTTTTGCTTTGTGGTTGAAGAACCTTGAAGGTGGTGGACATGGTTATTGTAGAGGATGTGATTGTGATTATATTGCTCTCGTTTCGACGGTAGAAGGAGACGGTGATGACGATGATGACGGTGGATACGACTTTGCTCCGGCTGCTTGA

Protein sequence

MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA

Homology

[Close]

BLAST of HG10006683 vs. NCBI nr
Match: KGN60650.1 (hypothetical protein Csa_019209 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1  MVPISNLSFALWLKNLEG-GGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
          M PIS L   L LKNL G GGHGY  GCDC Y  LVS  EGD  DDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGD-SDDDDGGYDFAPAA 56

[Close]

BLAST of HG10006683 vs. NCBI nr
Match: KAG6599418.1 (hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
           MVPIS    A WL +L  G HGY    DC YIA VS  + DGDDDDD  YDFAPAA
Sbjct: 60  MVPISK-PMASWLTSLGAGRHGYGERRDCGYIAPVSMAKEDGDDDDDDSYDFAPAA 114

[Close]

BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A0A0LF41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 40/57 (70.18%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1  MVPISNLSFALWLKNLEG-GGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
          M PIS L   L LKNL G GGHGY  GCDC Y  LVS  EGD  DDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGD-SDDDDGGYDFAPAA 56

[Close]

BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A5N5H4H8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_037670 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 1  MVPISNLSFALWLKNLE-GGGHGYCRGCDCDYIALVSTVEGDGDDDDDGGYDFAPAA 57
          M P+SN+S   W K  E G G    +  D   ++ V+  EGDGDDDDDG YDFAPAA
Sbjct: 1  MCPVSNISIVSWCKKHEDGDGRVIAKFED---LSPVTYSEGDGDDDDDGDYDFAPAA 54

[Close]

BLAST of HG10006683 vs. ExPASy TrEMBL
Match: A0A540MEH9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_017213 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 30/58 (51.72%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1  MVPISNLSFALWLKNLEGGGHGYCRGCDCDYIALVSTVEGDG--DDDDDGGYDFAPAA 57
          M PISN+S A W K  E GG         + ++ V+  EGDG  DDDDDG YDFAPAA
Sbjct: 1  MCPISNISIASWCKKHEDGGGRV--NAKFEDVSPVTCSEGDGDDDDDDDGDYDFAPAA 56

The following BLAST results are available for this feature:

BLAST of HG10006683 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60650.1	4.3e-11	70.18	hypothetical protein Csa_019209 [Cucumis sativus]	[more]
KAG6599418.1	2.2e-07	60.71	hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10006683 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF41	2.1e-11	70.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G005960 PE=4 SV=1	[more]
A0A5N5H4H8	7.2e-04	50.88	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A540MEH9	7.2e-04	51.72	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_017213 PE=4 SV=1	[more]

BLAST of HG10006683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006683.1	HG10006683.1	mRNA