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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTGTCATTTCGAAGATTGTTGTTTGTTGGAACATAAAACACTCATACAAAGGAGACGTTGATGATAGTGATTTTAGCATTGTTGATGCTAGTTCGATGAACATTGAAGGAGATCACGATAGTATGGATGCATATAATTATCTAATGCCATGCTTTGAAGGTGATGACGATGATGAAGACCCAATTTACGATTATGCTCCAGCTGCATGA mRNA sequence ATGTCTGTCATTTCGAAGATTGTTGTTTGTTGGAACATAAAACACTCATACAAAGGAGACGTTGATGATAGTGATTTTAGCATTGTTGATGCTAGTTCGATGAACATTGAAGGAGATCACGATAGTATGGATGCATATAATTATCTAATGCCATGCTTTGAAGGTGATGACGATGATGAAGACCCAATTTACGATTATGCTCCAGCTGCATGA Coding sequence (CDS) ATGTCTGTCATTTCGAAGATTGTTGTTTGTTGGAACATAAAACACTCATACAAAGGAGACGTTGATGATAGTGATTTTAGCATTGTTGATGCTAGTTCGATGAACATTGAAGGAGATCACGATAGTATGGATGCATATAATTATCTAATGCCATGCTTTGAAGGTGATGACGATGATGAAGACCCAATTTACGATTATGCTCCAGCTGCATGA Protein sequence MSVISKIVVCWNIKHSYKGDVDDSDFSIVDASSMNIEGDHDSMDAYNYLMPCFEGDDDDEDPIYDYAPAA
Homology
BLAST of HG10006682 vs. NCBI nr
Match: KAG6599418.1 (hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07 Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0
Query: 1 MSVISKIVVCWNIKHSYKGDVDDSDFSIVDASSMNIEGDHDSMDAYNYLMPCFEGDDDDE 60
MS++ KI V WN+ SYKGD D +D I+ A+ MN E D +S+DAY YL PCF D+
Sbjct: 1 MSIVFKIAVRWNVNDSYKGDDDGTDLDIIYATKMNTEEDRNSIDAY-YLKPCF-----DD 60
Query: 61 DPIYDYAP 69
D +D P
Sbjct: 61 DAFFDMVP 62
BLAST of HG10006682 vs. NCBI nr
Match: MBA0744761.1 (hypothetical protein [Gossypium gossypioides]) HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04 Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 0
Query: 1 MSVISKIVVCWNIKHSYKGDVDDSDFSIVDASSMNIEGDHDSMDAYNYLMPCFEGDDDDE 60
MS +SK+V W KH GD DD+DF A+ M +GD D D Y+Y DDD+
Sbjct: 29 MSALSKVVASWCKKH-VDGDDDDNDFDYAPAACMEGDGDDDDGD-YDYAPAASLEGDDDD 88
Query: 61 DPIYDYAPAA 71
D YDYAPAA
Sbjct: 89 DGSYDYAPAA 96
BLAST of HG10006682 vs. ExPASy TrEMBL
Match: A0A7J9C8H7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_007372 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.1e-04 Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 0
Query: 1 MSVISKIVVCWNIKHSYKGDVDDSDFSIVDASSMNIEGDHDSMDAYNYLMPCFEGDDDDE 60
MS +SK+V W KH GD DD+DF A+ M +GD D D Y+Y DDD+
Sbjct: 29 MSALSKVVASWCKKH-VDGDDDDNDFDYAPAACMEGDGDDDDGD-YDYAPAASLEGDDDD 88
Query: 61 DPIYDYAPAA 71
D YDYAPAA
Sbjct: 89 DGSYDYAPAA 96
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6599418.1 | 6.2e-07 | 48.53 | hypothetical protein SDJN03_09196, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| MBA0744761.1 | 6.4e-04 | 47.14 | hypothetical protein [Gossypium gossypioides] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A7J9C8H7 | 3.1e-04 | 47.14 | Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_007372 PE=4 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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