HG10006654 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006654
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein L31
Location	Chr07: 20752617 .. 20752832 (-)
RNA-Seq Expression	HG10006654
Synteny	HG10006654

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCATGTTATGATGACCAAAATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATTGGGCAGATTGCCAGGTTCAGACGTCGTTACGAGAAAGGGATTGCTGAAAATGTTGAAGATGCTGAAAAGTGA

mRNA sequence

ATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCATGTTATGATGACCAAAATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATTGGGCAGATTGCCAGGTTCAGACGTCGTTACGAGAAAGGGATTGCTGAAAATGTTGAAGATGCTGAAAAGTGA

Coding sequence (CDS)

ATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCATGTTATGATGACCAAAATACACAATGTCGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTGAAAGTATTGGGCAGATTGCCAGGTTCAGACGTCGTTACGAGAAAGGGATTGCTGAAAATGTTGAAGATGCTGAAAAGTGA

Protein sequence

MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEKGIAENVEDAEK

Homology

[Close]

BLAST of HG10006654 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYHFRA+RQ+AES+GQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
          GIAENVE+AEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of HG10006654 vs. NCBI nr
Match: XP_038890309.1 (uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 uncharacterized protein LOC120079925 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQ+AES+GQIARF+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQMAESVGQIARFKRRYEK 60

Query: 61 GIAENVEDAEK 72
           IAENVE+ +K
Sbjct: 61 MIAENVENTDK 71

[Close]

BLAST of HG10006654 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYHFRARRQLAESIGQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
           I EN E  EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of HG10006654 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQLAESIGQIA+F+RRYEK
Sbjct: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115

Query: 61  GIAENVEDAEK 72
            I EN E  EK
Sbjct: 116 DIVENDESVEK 126

[Close]

BLAST of HG10006654 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYH RARRQLAES+GQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
           I EN E  EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of HG10006654 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYHFRA+RQ+AES+GQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
          GIAENVE+AEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of HG10006654 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYHFRARRQLAESIGQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
           I EN E  EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of HG10006654 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVY FRARRQLAES+GQIA+F+RRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 GIAENVEDAEK 72
           I EN E  EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of HG10006654 vs. ExPASy TrEMBL
Match: A0A059BM77 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00713 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKG+HPQMQWISYVTQSGRLMHVMMTKIHN GKVYHFRA+RQ+A+S+GQIA+FRRRYE+
Sbjct: 1  MKKGIHPQMQWISYVTQSGRLMHVMMTKIHNTGKVYHFRAKRQMAQSLGQIAKFRRRYEQ 60

Query: 61 GIAENVEDAEK 72
             +NVED EK
Sbjct: 61 ---QNVEDNEK 68

[Close]

BLAST of HG10006654 vs. ExPASy TrEMBL
Match: A0A067F7J7 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQ+A+SIGQ+A+FRRRYE+
Sbjct: 4  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQ 63

Query: 61 GI-AENVE 68
           + AEN E
Sbjct: 64 QLDAENNE 71

[Close]

BLAST of HG10006654 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-25
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IH+VGKVYHF A+RQ+A+SIGQIA+F+RR+ +
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNE 60

Query: 61 GIAENVED 69
            AE  E+
Sbjct: 61 QEAEAAEE 68

[Close]

BLAST of HG10006654 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-25
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQLAESIGQIARFRRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IH+VGKVYHF A+RQ+A+SIGQIA+F+RR+ +
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNE 60

Query: 61 GIAENVED 69
            AE  E+
Sbjct: 61 QEAEAAEE 68

The following BLAST results are available for this feature:

BLAST of HG10006654 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143125.1	2.2e-28	90.14	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]
XP_038890309.1	1.6e-26	87.32	uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 unchara...	[more]
XP_022946219.1	2.1e-26	88.73	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
KAG7030387.1	1.0e-25	87.32	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023547264.1	1.3e-25	85.92	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10006654 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006654 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPB3	1.1e-28	90.14	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1G367	1.0e-26	88.73	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KGB8	1.1e-25	85.92	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A059BM77	2.7e-24	81.69	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00713 PE=4 SV...	[more]
A0A067F7J7	2.7e-24	86.76	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881...	[more]

BLAST of HG10006654 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	4.2e-25	76.47	Ribosomal protein L31	[more]
AT5G55125.2	4.2e-25	76.47	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..69
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006654.1	HG10006654.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome