HG10006629 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTACGCCTCCCGTCTCTAAGAGAATTCGTTGTTCGTCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCGAATCAGTCTGTTTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTTAGAGCAATTTTTCCTGATATGGATAAGCAGGTCTGTTTGGATATGCACTTTTTTTTTTCCTCCTAACGATGAATATAAAGCATTTCACGAACTTCGCATTTTAAATTATGCAATGGGTAGATGTTATCAATCGTTGAAATATGAACCACTTGTCTTGTTGTATTTTGAAGACATTTCTGATGATAGGTTTTTTGCTTTTATTTATAATTCTTGGGGAAATGTACTTGAATACTTACTGTTTGCTTTGAAATTGATATTCTAGCTTCTAGAGAGGGCACTTGAAGAATGTGGTGATGATCTAGATTTAGCCATCAGAAGCTTGAACCAGCTTCATTTAGGGTATAATGACAGAAACTTGGGAAGTGCTTCAAACTCCTCCGATGTAGCCTTGGAAGCAAATATTCAACCTCAATCCCAAGGTCTGTATTTTATATCTATTGAACTGCATATTGGACTTAATAATTATATTTTCAATCCTCTGTAATTACTTTTATAGGGAGTAATTTCAATTTTACGACTGCAAGTGCACGAGAGAAGATTTCAATGTTTTGTTCATTTATGAATATTTACTTGTGAAATTCTTGACATATTCTGAAGTGTTATATTTTCTTGATAAACCCTTTATTTTACAGACCAAGTACTTCTCATAGGAGAAGGAATAATAGGGATTCATTCTTCTGCTTTTAAAATGTGGCTAAGTTCGGGAAAAAAAGGGATTCATTGTTTGAAGTCATAACAAGCTACGTGCTTGGCTTGCTGATTAGATTAGTATAACCTAAAGTTAAGAAGTCAAACTTCTATTTAGTACATGGATTTGCATCTCAAAACTATGGATTGTGAGTTTTCTAATACCATTGTCAACTTAACCTCCGAATCCATGAATACAAATTTATTTACTTGACCTCTTATACTATAGATTAAGCATATTACACAAACCAAACACGGTTCACGTAGAACCAAGCTTCTACATCAAATTCATTTGCATAAGACATACACAAATTATACAAATTTAAGTGTTTCAGTTCTAAGCTCCAATAAGTTTGAACTTATAGAAGCCAAACATCCTGGAATTGTGCATTTTGTTTTTGTTTTACATTTCTCAGTGAAGCTAGGTTTGTGTCGTTTGCCACACAGTGTGGCTTTTGATATCATCTGTATACCTTGAAACCAACTTGACCTGGATTATAAGTAGTAGTTCCATTCAAATTTACAACTAACTAGTAGAGAATGGCCGTGTGAAATCAGTGATCTTTTATTTTCTTACCTGAATATCCATGACACTAATAGCTTGGGGCAGTGTATCATTTTTAGGTCGTTAGGACATTGACTGGTGACGAAGTTTGATTACTTAATTAAGTCAGCTTGGATTGGCATCAGAGAGTGCCTAGGATAAACCTTGGTGATGTCATGCAGAGCTTTCTCAGTTCTGATGACGTTGTCATACATAGAAGGTTTTTGTTTAAACTCATTTTTAGCAGAGGCAGATTAATAACTAATAAGGAGATTCCCAACAACGTTCATGGAAAATTTTCTTTGATTTTTGTTGGTGAAAGTTAGTTTGCTGCCAATCAATTTAGGATATATGCACACATATGTATTTATATATATATATTAGCCTTTTCTACAAATTGATTTTTACATAATGTTATGGTTTCTAAGTTCAGTGGATTGGAGCACTTTGTAACTTAACTTCCATTTGGTATGTAGTGCACCTCCTTGTCCGTCTACTCCCCTTTTGTAATCATCTTTTCTTTCAACACGGTGTTTCTTCCCTCCTCCCCGAATTTGGCATTGAGTGAACTTCCATGGTGAAGAGTACACTGTAGTTTACCCGTTTGTTGATCTTTTATTCCTTGTTTAACAAGCCGAAATCCCCCCTACCCCCCTTCATATTTGTGCCTTATGGAATAACATTTTCTTTCGAGAGATATTGACATATTCTCTCAATGTACGACCATACTTGTTAGCTTAACTGTTTGCTGGGCTGCATATTATGTAGGCTACGACTACGAGTGAGGCACCTTCAATTTAGTCTATAACCTAAACAATCCAAAAGACTGCTTAAGGGCATGCATATATCTTCTGCTCCTCAAATTGGAATCTCCAATACAGTTTAAACAGATTATTAATTAAAACAGTTTGAATTTTTAGGAGTTGAACTCACAATAAAAAACAGTATGAATTGTTTCCTTTAAAAGAAAAAATGAGAACAGTTTGAATTATACTTGCAAATTTTGTTATATGCTTCTTCTGATGCCCTTAGATGCAGTTGTTAGTTTCGTCTTGTGAATTTATCTTTTCATTTAAAATGAAGCAGAAACACAAGGAGAAGCTGGAATTGCTGAGGATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTCGTGAACGAAATGACAAGTGCTTCAAACATGGATGATGCGCGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTGGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAAGCAGCAAATAATTTTCATCAGGTCTTGGAACGTTTATAATTTCTGCTACTTGTTTGAGTCACCAATATAGTCACCAATATTCTGCCACTACAATTTGTGGGAGTCTTACCGTGATTCTTATTTGTTTATCTAATCTAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCACTTATTCAGGAAAACACTATTCTCAAACGAGCTGTCTCTATTCAGCACGAACGTCAGAAAGAATATGAAGGCAGGAACCAGGAGTTGCAACATCTTAAAGAATTAGTCTCTCAGTACCAGGAACAGTTGAAAACACTAGAGGTTGGTTCCATAAATGCTTTAAGATCTTGCTTCGTCAGTTACTAAAAGCCACAGTTTTAATATCCTTAATATTCTTTACACAATTTCTCTTTTTTTTTTTTTAAAGAAAAAAAACATTAACAAAATACTTTATGGTATCATGCATACTTATAGACTGATATCTCTTGCATCTTTTAATCAACTATTAGGTGAATAATTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAGAGTAGCTCTATTCCAGGGCGTTTTCACCCTGATGTTTTCTAA ATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTACGCCTCCCGTCTCTAAGAGAATTCGTTGTTCGTCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCGAATCAGTCTGTTTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTTAGAGCAATTTTTCCTGATATGGATAAGCAGCTTCTAGAGAGGGCACTTGAAGAATGTGGTGATGATCTAGATTTAGCCATCAGAAGCTTGAACCAGCTTCATTTAGGGTATAATGACAGAAACTTGGGAAGTGCTTCAAACTCCTCCGATGTAGCCTTGGAAGCAAATATTCAACCTCAATCCCAAGAAACACAAGGAGAAGCTGGAATTGCTGAGGATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTCGTGAACGAAATGACAAGTGCTTCAAACATGGATGATGCGCGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTGGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAAGCAGCAAATAATTTTCATCAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCACTTATTCAGGAAAACACTATTCTCAAACGAGCTGTCTCTATTCAGCACGAACGTCAGAAAGAATATGAAGGCAGGAACCAGGAGTTGCAACATCTTAAAGAATTAGTCTCTCAGTACCAGGAACAGTTGAAAACACTAGAGGTGAATAATTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAGAGTAGCTCTATTCCAGGGCGTTTTCACCCTGATGTTTTCTAA ATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTACGCCTCCCGTCTCTAAGAGAATTCGTTGTTCGTCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCGAATCAGTCTGTTTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTTAGAGCAATTTTTCCTGATATGGATAAGCAGCTTCTAGAGAGGGCACTTGAAGAATGTGGTGATGATCTAGATTTAGCCATCAGAAGCTTGAACCAGCTTCATTTAGGGTATAATGACAGAAACTTGGGAAGTGCTTCAAACTCCTCCGATGTAGCCTTGGAAGCAAATATTCAACCTCAATCCCAAGAAACACAAGGAGAAGCTGGAATTGCTGAGGATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTCGTGAACGAAATGACAAGTGCTTCAAACATGGATGATGCGCGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTGGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAAGCAGCAAATAATTTTCATCAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCACTTATTCAGGAAAACACTATTCTCAAACGAGCTGTCTCTATTCAGCACGAACGTCAGAAAGAATATGAAGGCAGGAACCAGGAGTTGCAACATCTTAAAGAATTAGTCTCTCAGTACCAGGAACAGTTGAAAACACTAGAGGTGAATAATTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAGAGTAGCTCTATTCCAGGGCGTTTTCACCCTGATGTTTTCTAA MSAIVCGKRSLFEDLPTPPVSKRIRCSSSSPVRFSPPRSSNQSVFPFPQTSSSQSAHLVDYLRAIFPDMDKQLLERALEECGDDLDLAIRSLNQLHLGYNDRNLGSASNSSDVALEANIQPQSQETQGEAGIAEDATASENLPTNGAEWVDLFVNEMTSASNMDDARSRASRVLEVLEKSICARANAEAANNFHQENKMLREQVEALIQENTILKRAVSIQHERQKEYEGRNQELQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF Homology
BLAST of HG10006629 vs. NCBI nr
Match: XP_038890913.1 (uncharacterized protein LOC120080344 [Benincasa hispida]) HSP 1 Score: 526.9 bits (1356), Expect = 1.0e-145 Identity = 277/281 (98.58%), Postives = 279/281 (99.29%), Query Frame = 0
BLAST of HG10006629 vs. NCBI nr
Match: XP_008457047.1 (PREDICTED: uncharacterized protein LOC103496812 isoform X2 [Cucumis melo] >TYJ97857.1 uncharacterized protein E5676_scaffold285G00690 [Cucumis melo var. makuwa]) HSP 1 Score: 524.6 bits (1350), Expect = 5.1e-145 Identity = 275/281 (97.86%), Postives = 279/281 (99.29%), Query Frame = 0
BLAST of HG10006629 vs. NCBI nr
Match: XP_008457037.1 (PREDICTED: uncharacterized protein LOC103496812 isoform X1 [Cucumis melo] >KAA0063530.1 uncharacterized protein E6C27_scaffold329G00350 [Cucumis melo var. makuwa]) HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143 Identity = 275/282 (97.52%), Postives = 279/282 (98.94%), Query Frame = 0
BLAST of HG10006629 vs. NCBI nr
Match: XP_011648697.1 (uncharacterized protein LOC101217268 isoform X2 [Cucumis sativus] >KGN60704.1 hypothetical protein Csa_019372 [Cucumis sativus]) HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143 Identity = 273/281 (97.15%), Postives = 277/281 (98.58%), Query Frame = 0
BLAST of HG10006629 vs. NCBI nr
Match: XP_011648696.1 (uncharacterized protein LOC101217268 isoform X1 [Cucumis sativus]) HSP 1 Score: 515.0 bits (1325), Expect = 4.1e-142 Identity = 273/282 (96.81%), Postives = 277/282 (98.23%), Query Frame = 0
BLAST of HG10006629 vs. ExPASy TrEMBL
Match: A0A5D3BFF3 (CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00690 PE=4 SV=1) HSP 1 Score: 524.6 bits (1350), Expect = 2.5e-145 Identity = 275/281 (97.86%), Postives = 279/281 (99.29%), Query Frame = 0
BLAST of HG10006629 vs. ExPASy TrEMBL
Match: A0A1S3C471 (uncharacterized protein LOC103496812 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496812 PE=4 SV=1) HSP 1 Score: 524.6 bits (1350), Expect = 2.5e-145 Identity = 275/281 (97.86%), Postives = 279/281 (99.29%), Query Frame = 0
BLAST of HG10006629 vs. ExPASy TrEMBL
Match: A0A5A7V8M8 (CUE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00350 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 6.1e-144 Identity = 275/282 (97.52%), Postives = 279/282 (98.94%), Query Frame = 0
BLAST of HG10006629 vs. ExPASy TrEMBL
Match: A0A1S3C4J9 (uncharacterized protein LOC103496812 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496812 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 6.1e-144 Identity = 275/282 (97.52%), Postives = 279/282 (98.94%), Query Frame = 0
BLAST of HG10006629 vs. ExPASy TrEMBL
Match: A0A0A0LI42 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G007970 PE=4 SV=1) HSP 1 Score: 519.6 bits (1337), Expect = 8.0e-144 Identity = 273/281 (97.15%), Postives = 277/281 (98.58%), Query Frame = 0
BLAST of HG10006629 vs. TAIR 10
Match: AT5G32440.1 (Ubiquitin system component Cue protein ) HSP 1 Score: 294.7 bits (753), Expect = 8.1e-80 Identity = 172/285 (60.35%), Postives = 214/285 (75.09%), Query Frame = 0
BLAST of HG10006629 vs. TAIR 10
Match: AT5G32440.3 (Ubiquitin system component Cue protein ) HSP 1 Score: 292.7 bits (748), Expect = 3.1e-79 Identity = 171/286 (59.79%), Postives = 211/286 (73.78%), Query Frame = 0
BLAST of HG10006629 vs. TAIR 10
Match: AT1G80040.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 193.4 bits (490), Expect = 2.5e-49 Identity = 124/284 (43.66%), Postives = 167/284 (58.80%), Query Frame = 0
BLAST of HG10006629 vs. TAIR 10
Match: AT1G80040.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1). ) HSP 1 Score: 188.3 bits (477), Expect = 8.1e-48 Identity = 125/287 (43.55%), Postives = 168/287 (58.54%), Query Frame = 0
BLAST of HG10006629 vs. TAIR 10
Match: AT5G32440.2 (Ubiquitin system component Cue protein ) HSP 1 Score: 172.6 bits (436), Expect = 4.6e-43 Identity = 110/200 (55.00%), Postives = 135/200 (67.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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