HG10006579 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006579
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 20053661 .. 20057703 (+)
RNA-Seq ExpressionHG10006579
SyntenyHG10006579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCAAGGTATGTTATACCAATTAATTTCCTCAACTAATTTTTCAAGTTGGGTTTTGTTTTTGTTTTTAATGTTTCATTTGATAACTAAATCAATTTCTTGTTTTTAGTAAATTGAAATTATACATGTTTTTGTTTGTTATTCACTTTTTAGCAATGACAGGGAAAAAATAGTATTTTTTTTTATGAAATTCAAATATTTCTTTCATAAACACGAAAAATTTTAAAAACATAAAGCTAAAAATGAAATCAATATCAAATAGGGTCTAAATTAATTTAGAATGATTATAAATATTTTTAAGTGTGATTTTGAATATGTAACTATCATAACATCACCACTTCCGAATAAGTTATTATAAGTGCTTACAAAGTATTTTTAGGTTAGAAAAAAATAGTGTTTTTATGTAGCTAGAAAGTTATCGAGTCCTTTGCTGACTGAAAAAAAAATGATATTTTTTTTTTTTTTTTTGAAGGGATTAGGTTGTTGGAGAAAGGGATCAACAAAGAGTATAAGAAAAATGGAGCTGTTTCGGGTGGTAAAAATGGTGGAGATTTATTGATGACAATGAAGAAGAGAGCCCCAATGAGGGCCTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAGTCATAAATCTAGGCATCATTAGTTTTTTTTTTTATGGAATTATTTGAGACGTACATAGAAACCGAACATTTATTAGTTGGATCGTCATTATTCTTTAGAAGAATTAGTTGATGGAGATGAAGGAGAAATTTACTGAATTAATTAAAAGAAATTATTTGAGGAGCTAGAATAACGTAGCTAACAATGTTATATTGTAGTGTACTGTAATATGTACGAGAGATAAATTAAAAATGTTTGTAGTAGCCACGTTGAATAGCTTTTCTAGGTTTAGCTTTAACTATCTAGGTTGAATTAAGGACCATGATAGATCAGTTTGGGCTGGTTGGAATTTGAGGATGAAATTCTTTTATGAAATAAGATTCAAGAAATGTTGAGTCCTAGTTTAATTCTTCATTCACTTATTCTCTTCTCTCTAGTTAATTTTATGTATTTTTTTTTACCACACTCAATTAACTCATTCTTCATAGTTTTGTATTATTTTAATTATGTCATTAACCTTCTAACACTTATTATTTTAATTGTGTTTAAATTAAAATTCCTCTTGTTGTTGATGAAGAGTACTAACAATTTATTAATCATATTAGTGGCAAATAACCATTTTTCATCTGAAAATGAAATTAATAAAATAGAAAAAGTGAGAGTGAGAAATATATTAAAAAGTGCTTTTAGAAAGGAAAAGTATAGAAAATTCAAATTGATTAGTAAAAAAAGACTGAAAGAGTGACACCTATACGGAAAAGCTGCAACATTTTGGGGGTCTTTTTGTTACTTTTTTAATATTATTTTCTTTAAGTACTTAGTAAAGCCACCAAACTTTTGTTTGAATATTTAAACTCACTCGGTAATTAATACATATTATATGTCAATTAAGTTTTTTTTTTTTTTTTTTTATTTTAGCAATATTATCAAACTTGATATAAATATATATTAAGAGGTCAAACATGTAGCACCTATGTTAATTTTTTTTCCTAATCTAATCTTATGCAATGCGTTATCGAGTTAAGGTTACCATAGAGATCCATACCCCTGACTCCATGAGTCAATTATGGCCTATAAAACTCAAAGAGAAAATATTTCCTTAGCATTCTCGTGGGACTGAGTTGAGTTTGAACACTAACTAATATAAAGAGGATATATATATACAACTTACCAAGCTATGTACCAATCGAGTAAGGTGTACATGAATTGAGTTGGAGGAATTTTTTGGACCAAACTGAAAATTTTGGTTGGTCGGGTTGGCTACCCAAAAGACCCAAACAGGGTCTCCAACCTAACTCTTAAAATTTAGATTGGGTTGAATTGGGTTATGTTGTCAGATTATTATTTTTTTCTTATTAATTTAAAATATTTAAATTTAACTAAAATATATGACTAATAACTAAAATCTCATTAAATTCAAATGTTAAATATCAAATATCCATGATATCTGTTCCAAGTTTTAAACAAAGACAAACATAACAATTTAAAAAAAACAATAAACAAAGAAATATATATATATATATATATATATATATATAATTTGGGTTGGGTTGGGTTAATGCTGAATTTTTTTTATTCAACCCGACAAAAATAAAAAAATTCAACTAAACTCAACCCTTACAATTTTGGGTTGGATAGTCTAAGTTGTTGAGTCATTTAAACTTCTCCTACTTGCAATTCCAATGGACTCATCCTACAACTTTGACACGCATATAGCAAAGACAACATAAAAAATATAAAAGGAATCCATTCTACTAAATGAGGCATGCAAAATTATCTTAAGCCTGGTTCGACATTACTTAAACATTAACTTGAGCATCAGAGCATGTTGGACATAGCACTATATCAATCTGAATTCTAACTTACAGGACGATTAACTAGTCATTAGATTACTAATCTACACGTACTGTTGAGCTCACCAATTTATCACATCAACACAATGTGTGGACATATTTTATCTAATATAGGGGGTGTATGGCTTACCAACTTCATAAGCCAGTGTTAAACAATTCAATTTCAATAGTAAATAGTATTGAAATTTGCACATTTATCGAGAAACTTCATCTTACAACTCTACACCCAAACATAAACTTCCTAACTCCAACGTATTAACTCCAGATTTCATATAAATTCAACTCAACGTCCCAAACACCCCTATAAAAATTAACATAAGCTAGTTTATGTCAAACTTTGTGATAAACAAAAGATAACTATTTAGTCAACCTTAATTTATATTGCATTATAATCTCTAATAGAATCATGTTAAGGACCCGTTTGGATTAACTTAAAAAAATATATTTTTTAAAAAAATTCATTTTCATTTAAACATTTTTTTATAAGAACGGTTTAAAATAAAGACACTAATGGTTTTCAAAATCCAATTTGAGTGGTTGCCAAACATTTGTATTTCTTTCAAAATATCTTATTTTTTAAATTAGACACTTGAAAAAGTATTCCAAACACACCCTAAATATATTCACTATGATCTTAACAAGATTTCATCGAGTTTTCTGCTTGCTTAAAACTTAAACAATTTGATACCGATATCACACATATAAACTTCACGTTTCATCTTCGTTTATGGATACGATGCTATGTTAAAAAAAAAACAGAAAATCTGTCGAGATATCCTCACATTTTTTTTTCACTTTGCCAACAATAATGTTAGTTGAAGCATCTACTTCGAGAATTCATACACGTCTTAGTTTAACTACTTTAAGAATTTATATAAATCACATAATTTATAAACGTTAGATAGAAACCAACTGTATTTTTTAATTACATTGCTTACTTTAGTACATAATTCAAGAAATTGAAAGTCAAAGATTAAAATGGACTCAACTTAGATTTTAATGGGCTGAGTCAACTTAACGTAGTTAAGTCCCATCAGATAACTTTAAAATAATGTTGACCCATAATCAAATAGTAATTTAAGCAAATTATACTTAGGAATAGGACAATGTTTTTTTTTTTTTTTTTTAACTATTTAGTCAACTTAACCTTAATTAAGTCACATCAAATAATTCTCTAAATCAATTGTGCTGTACTTATGTTGACCCAATAAATTATAACCAAGAGTAATCTTAAGAACTATTTTGCAAAGTTTAAACTTATATATTAAATATATTTGCAATTAATAAAGATAATTTTGGATCATATGGTATAATTGACATTTGCGAATTAAATAGCAGAATCTAGGCCAAAAGAAAAGAGTTTAGGACCCAGAAGGAACCAGAGAGGAAAAGTGGCTTGGGCCGAGGCCGAGCCCAAGGAAATTCCTGGGATCATAATCCTGCGACTAGCCCAACTCCAAGGAAGAGCAATAGAATCTGGATTTGGCTCGAAAACCCTCAAACCATGA

mRNA sequence

ATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCAAGGGATTAGGTTGTTGGAGAAAGGGATCAACAAAGAGTATAAGAAAAATGGAGCTGTTTCGGGTGGTAAAAATGGTGGAGATTTATTGATGACAATGAAGAAGAGAGCCCCAATGAGGGCCTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAAATCTAGGCCAAAAGAAAAGAGTTTAGGACCCAGAAGGAACCAGAGAGGAAAAGTGGCTTGGGCCGAGGCCGAGCCCAAGGAAATTCCTGGGATCATAATCCTGCGACTAGCCCAACTCCAAGGAAGAGCAATAGAATCTGGATTTGGCTCGAAAACCCTCAAACCATGA

Coding sequence (CDS)

ATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCAAGGGATTAGGTTGTTGGAGAAAGGGATCAACAAAGAGTATAAGAAAAATGGAGCTGTTTCGGGTGGTAAAAATGGTGGAGATTTATTGATGACAATGAAGAAGAGAGCCCCAATGAGGGCCTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAAATCTAGGCCAAAAGAAAAGAGTTTAGGACCCAGAAGGAACCAGAGAGGAAAAGTGGCTTGGGCCGAGGCCGAGCCCAAGGAAATTCCTGGGATCATAATCCTGCGACTAGCCCAACTCCAAGGAAGAGCAATAGAATCTGGATTTGGCTCGAAAACCCTCAAACCATGA

Protein sequence

MKLSSMAVLLLFLIMSQAQGIRLLEKGINKEYKKNGAVSGGKNGGDLLMTMKKRAPMRALRKPYSHWLPGIQEDYHGPRKSRPKEKSLGPRRNQRGKVAWAEAEPKEIPGIIILRLAQLQGRAIESGFGSKTLKP
Homology
[Close]
BLAST of HG10006579 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-17
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 1  MKLSSMAVLLLFLIMSQAQGIRLLEKGINKEYKKNGAVSGGKNGGDLLMTMKKRAPMRAL 60
          MK SSMAVLLLFLI+S+A+GIRLL+K ++KE K        +NGGDLL TMK RAP +A 
Sbjct: 1  MKPSSMAVLLLFLIISEAEGIRLLDKRMSKEDK--------RNGGDLLGTMKWRAPNKAW 60

Query: 61 RKPYSHWLPGIQEDYHGPRKSRPKEKSLG 90
          RKPYSHWLPGIQEDYH     R  ++S+G
Sbjct: 61 RKPYSHWLPGIQEDYHAFTALRFLKRSMG 81

[Close]
BLAST of HG10006579 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 6  MAVLLLFL-IMSQAQGIRLLEKGINKEYKKNGAVSGGKNGGDLLMTMKKRAPMRALRKPY 65
          MAVLLLFL IM QAQGIRLLEKG++KEYKK+G     KNGGD LMTMKKRAP+RALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRKSRPK 85
          SHWLPGIQEDYHGPR  + +
Sbjct: 61 SHWLPGIQEDYHGPRSHKSR 80

[Close]
BLAST of HG10006579 vs. ExPASy TrEMBL
Match: A0A5N6RX03 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-04
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 5  SMAVLLLFLIMS-QAQGIRL----LEKGINKEYKKNG-AVSGG----KNGGDLLMTMKKR 64
          ++++LLL L++S +AQGIRL    +  G  K+++ +G A+  G    K+G     TMKKR
Sbjct: 6  ALSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKR 65

Query: 65 APMRALRKPYSHWLPGIQEDYHGPRKSRPK 85
             R L K   HWLP I EDY+GPR  RP+
Sbjct: 66 V-SRVLSKKSHHWLPSIHEDYYGPRSHRPR 94

The following BLAST results are available for this feature:
BLAST of HG10006579 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6586348.15.7e-1762.92Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... [more]
BLAST of HG10006579 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10006579 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ481.8e-2478.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1[more]
A0A5N6RX036.0e-0443.33Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1[more]
BLAST of HG10006579 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006579.1HG10006579.1mRNA