HG10006559 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006559
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	B3 domain-containing protein At2g31720-like
Location	Chr07: 19841897 .. 19842571 (+)
RNA-Seq Expression	HG10006559
Synteny	HG10006559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACGAAGACGACCCAGCTGGCAAAATTTCGTGGGCGTCGGAAAACAGGGACAACCCAAAAGCTGTAATGGCTAACGAAGACGACCTGGTAGAATCTCACCGGCGCCGGAAAACAGAGACAAACCAAATGCTGCAGTGGCGAACGGTGACAACCCGTTGCCGAAATTCCACTGGCGCCAGAAAACAGGTGGATCTAGATGGAGAAATTGAAGTGGTCGGGTACGAGATGCCAGCGGAGATGAGAGAGTATATAACAGAAAGAATGGGGTTATGGGTTGCAAATGATAATCGAAAAGGCATTGACGGCGACGGACATGAGGAAGTATCAGGGCGGTTGTCGCTGCCGGCGAAGCAGTTGAGAGCGAAATTTCTGACGGCAGAGGAGGTGACTTATTTCGAGGATCGGAGCGAGGTGAATAATGGATTGAATTACATTGACACGATCGTTGTGGGATCAGATTTGAGAGAGAATCCAATGCAATTCAAGAAGTGGCTGCTTGGGGCAAGATTTGTGAATTTTTTATTAAAAAAATGGAACTCTTTTTCCAAAACTTACCGACTCAAGGTTGGAAATAGGTTCGAATTTGGAGATTTAGGGTTGATCAGAGAGACGATGAAAATGATATTGTTAAATCTGAACTACGTTCCGCGCTTATCAAGCTCTAGATGA

mRNA sequence

ATGGAAAACGAAGACGACCCAGCTGGCAAAATTTCGTGGGCGTCGGAAAACAGGGACAACCCAAAAGCTGTAATGGCTAACGAAGACGACCTGGTAGAATCTCACCGGCGCCGGAAAACAGAGACAAACCAAATGCTGCAGTGGCGAACGGTGACAACCCGTTGCCGAAATTCCACTGGCGCCAGAAAACAGGTGGATCTAGATGGAGAAATTGAAGTGGTCGGGTACGAGATGCCAGCGGAGATGAGAGAGTATATAACAGAAAGAATGGGGTTATGGGTTGCAAATGATAATCGAAAAGGCATTGACGGCGACGGACATGAGGAAGTATCAGGGCGGTTGTCGCTGCCGGCGAAGCAGTTGAGAGCGAAATTTCTGACGGCAGAGGAGGTGACTTATTTCGAGGATCGGAGCGAGGTGAATAATGGATTGAATTACATTGACACGATCGTTGTGGGATCAGATTTGAGAGAGAATCCAATGCAATTCAAGAAGTGGCTGCTTGGGGCAAGATTTGTGAATTTTTTATTAAAAAAATGGAACTCTTTTTCCAAAACTTACCGACTCAAGGTTGGAAATAGGTTCGAATTTGGAGATTTAGGGTTGATCAGAGAGACGATGAAAATGATATTGTTAAATCTGAACTACGTTCCGCGCTTATCAAGCTCTAGATGA

Coding sequence (CDS)

ATGGAAAACGAAGACGACCCAGCTGGCAAAATTTCGTGGGCGTCGGAAAACAGGGACAACCCAAAAGCTGTAATGGCTAACGAAGACGACCTGGTAGAATCTCACCGGCGCCGGAAAACAGAGACAAACCAAATGCTGCAGTGGCGAACGGTGACAACCCGTTGCCGAAATTCCACTGGCGCCAGAAAACAGGTGGATCTAGATGGAGAAATTGAAGTGGTCGGGTACGAGATGCCAGCGGAGATGAGAGAGTATATAACAGAAAGAATGGGGTTATGGGTTGCAAATGATAATCGAAAAGGCATTGACGGCGACGGACATGAGGAAGTATCAGGGCGGTTGTCGCTGCCGGCGAAGCAGTTGAGAGCGAAATTTCTGACGGCAGAGGAGGTGACTTATTTCGAGGATCGGAGCGAGGTGAATAATGGATTGAATTACATTGACACGATCGTTGTGGGATCAGATTTGAGAGAGAATCCAATGCAATTCAAGAAGTGGCTGCTTGGGGCAAGATTTGTGAATTTTTTATTAAAAAAATGGAACTCTTTTTCCAAAACTTACCGACTCAAGGTTGGAAATAGGTTCGAATTTGGAGATTTAGGGTTGATCAGAGAGACGATGAAAATGATATTGTTAAATCTGAACTACGTTCCGCGCTTATCAAGCTCTAGATGA

Protein sequence

MENEDDPAGKISWASENRDNPKAVMANEDDLVESHRRRKTETNQMLQWRTVTTRCRNSTGARKQVDLDGEIEVVGYEMPAEMREYITERMGLWVANDNRKGIDGDGHEEVSGRLSLPAKQLRAKFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSFSKTYRLKVGNRFEFGDLGLIRETMKMILLNLNYVPRLSSSR

Homology

[Close]

BLAST of HG10006559 vs. NCBI nr
Match: XP_022998957.1 (B3 domain-containing protein At2g31720-like [Cucurbita maxima])

HSP 1 Score: 131.7 bits (330), Expect = 7.7e-27
Identity = 70/131 (53.44%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ VV  EMPAEMRE+ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVVEEEMPAEMREHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+ ++ LNYIDT +VGSDLR NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGDDELNYIDTFIVGSDLRVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. NCBI nr
Match: KAG6599340.1 (B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-26
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ V   EMPAEMRE+ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVAEEEMPAEMREHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+ ++ LNYIDT +VGSDL+ NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGDDELNYIDTFIVGSDLKVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. NCBI nr
Match: XP_022946870.1 (B3 domain-containing protein At2g31720-like [Cucurbita moschata] >KAG7030330.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-26
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ V   EMPAEMRE+ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVAEEEMPAEMREHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+ ++ LNYIDT +VGSDL+ NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGDDELNYIDTFIVGSDLKVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. NCBI nr
Match: XP_023545398.1 (B3 domain-containing protein At2g31720-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-25
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ V   EMPAEMR++ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVAEEEMPAEMRDHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+  + LNYIDT +VGSDL+ NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGEDELNYIDTFIVGSDLKVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. NCBI nr
Match: XP_008445569.1 (PREDICTED: putative B3 domain-containing protein At3g49610 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-08
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 36  RRRKTETNQMLQWRTVTTRCRNSTGARKQVDLDGEIEVVGYEMPAEMREYITERMGLWVA 95
           R+RK         ++ T + R  + + KQ     E+E    EMPA MR+ I    G  + 
Sbjct: 61  RKRKKSPTVKQSKKSPTAKQRKKSPSEKQRKKSMELEESFPEMPASMRDRIVGNGGYEIQ 120

Query: 96  NDNRKGIDGDGHEEVSGRLSLPAKQLRAKFLTAEEVTYFEDRSEVNNGLNY----IDTIV 155
              +K ++        GRL LPA +++ +F+  EE    E   E NNG       ++  V
Sbjct: 121 LVIQKQLEESDVSRNHGRLCLPATKVKTEFVREEERNILE---EENNGKKKNKKGLEVGV 180

Query: 156 VGSDLRENPMQFKKWLLGARFVNFLLKKWNSFSKTYRLKVGN 194
           +G DLRE+ M  KKW +G+     L+K WN F +   L+ G+
Sbjct: 181 MGDDLRESSMCLKKWKIGSGKFYCLMKNWNCFVEENGLRSGD 219

[Close]

BLAST of HG10006559 vs. ExPASy TrEMBL
Match: A0A6J1K9G9 (B3 domain-containing protein At2g31720-like OS=Cucurbita maxima OX=3661 GN=LOC111493483 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-27
Identity = 70/131 (53.44%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ VV  EMPAEMRE+ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVVEEEMPAEMREHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+ ++ LNYIDT +VGSDLR NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGDDELNYIDTFIVGSDLRVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. ExPASy TrEMBL
Match: A0A6J1G587 (B3 domain-containing protein At2g31720-like OS=Cucurbita moschata OX=3662 GN=LOC111450806 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-26
Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 66  DLDGEIE-VVGYEMPAEMREYITERMGLW-VANDNRKGIDGDGHEEVSGRLSLPAKQLRA 125
           D D EI+ V   EMPAEMRE+ITERMG + V     K +         GRLSLP K +R 
Sbjct: 81  DPDEEIQPVAEEEMPAEMREHITERMGGYRVQMIIEKKLTATDMRTNQGRLSLPKKMVRV 140

Query: 126 KFLTAEEVTYFEDRSEVNNGLNYIDTIVVGSDLRENPMQFKKWLLGARFVNFLLKKWNSF 185
           +F+TAEE    E RS+ ++ LNYIDT +VGSDL+ NP++FKKWL+G  +VN L+ KWNSF
Sbjct: 141 EFMTAEEEKMLEHRSKGDDELNYIDTFIVGSDLKVNPIRFKKWLMGKNYVNCLVNKWNSF 200

Query: 186 SKTYRLKVGNR 195
           ++ Y LK G +
Sbjct: 201 ARAYGLKTGTK 211

[Close]

BLAST of HG10006559 vs. ExPASy TrEMBL
Match: A0A5A7VC33 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005250 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 36  RRRKTETNQMLQWRTVTTRCRNSTGARKQVDLDGEIEVVGYEMPAEMREYITERMGLWVA 95
           R+RK         ++ T + R  + + KQ     E+E    EMPA MR+ I    G  + 
Sbjct: 65  RKRKKSPTVKQSKKSPTAKQRKKSPSEKQRKKSMELEESFPEMPASMRDRIVGNGGYEIQ 124

Query: 96  NDNRKGIDGDGHEEVSGRLSLPAKQLRAKFLTAEEVTYFEDRSEVNNGLNY----IDTIV 155
              +K ++        GRL LPA +++ +F+  EE    E   E NNG       ++  V
Sbjct: 125 LVIQKQLEESDVSRNHGRLCLPATKVKTEFVREEERNILE---EENNGKKKNKKGLEVGV 184

Query: 156 VGSDLRENPMQFKKWLLGARFVNFLLKKWNSFSKTYRLKVGN 194
           +G DLRE+ M  KKW +G+     L+K WN F +   L+ G+
Sbjct: 185 MGDDLRESSMCLKKWKIGSGKFYCLMKNWNCFVEENGLRSGD 223

[Close]

BLAST of HG10006559 vs. ExPASy TrEMBL
Match: A0A1S3BD17 (putative B3 domain-containing protein At3g49610 OS=Cucumis melo OX=3656 GN=LOC103488551 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 50/162 (30.86%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 36  RRRKTETNQMLQWRTVTTRCRNSTGARKQVDLDGEIEVVGYEMPAEMREYITERMGLWVA 95
           R+RK         ++ T + R  + + KQ     E+E    EMPA MR+ I    G  + 
Sbjct: 61  RKRKKSPTVKQSKKSPTAKQRKKSPSEKQRKKSMELEESFPEMPASMRDRIVGNGGYEIQ 120

Query: 96  NDNRKGIDGDGHEEVSGRLSLPAKQLRAKFLTAEEVTYFEDRSEVNNGLNY----IDTIV 155
              +K ++        GRL LPA +++ +F+  EE    E   E NNG       ++  V
Sbjct: 121 LVIQKQLEESDVSRNHGRLCLPATKVKTEFVREEERNILE---EENNGKKKNKKGLEVGV 180

Query: 156 VGSDLRENPMQFKKWLLGARFVNFLLKKWNSFSKTYRLKVGN 194
           +G DLRE+ M  KKW +G+     L+K WN F +   L+ G+
Sbjct: 181 MGDDLRESSMCLKKWKIGSGKFYCLMKNWNCFVEENGLRSGD 219

[Close]

BLAST of HG10006559 vs. ExPASy TrEMBL
Match: A0A0A0LRL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G365090 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 45/160 (28.12%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 36  RRRKTETNQMLQ-WRTVTTRCRNSTGARKQVDLDGEIEVVGYEMPAEMREYITERMGLWV 95
           +R+K E+  + Q  ++ T + R ++   KQ     E+E    EMPA MR+ +  + G  +
Sbjct: 62  KRKKKESPTVKQSKKSPTAKKRKTSPTAKQKKKSMELEESFPEMPASMRDRVVGKGGYEI 121

Query: 96  ANDNRKGIDGDGHEEVSGRLSLPAKQLRAKFLTAEEVTYFEDRSE-VNNGLNYIDTIVVG 155
               +K ++        GRL LPAK+++ +F+  EE    E+ ++        ++  V+ 
Sbjct: 122 QLVIQKQLEESDVSRNHGRLCLPAKKVKTEFVREEERNILEEENDGKKKNKKGLEVGVMD 181

Query: 156 SDLRENPMQFKKWLLGARFVNFLLKKWNSFSKTYRLKVGN 194
             LRE+ M  KKW +G+     L+K WN F +   L+ G+
Sbjct: 182 DSLRESSMCLKKWKIGSGKFYCLMKNWNCFVEENGLRSGD 221

The following BLAST results are available for this feature:

BLAST of HG10006559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998957.1	7.7e-27	53.44	B3 domain-containing protein At2g31720-like [Cucurbita maxima]	[more]
KAG6599340.1	5.0e-26	51.91	B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946870.1	5.0e-26	51.91	B3 domain-containing protein At2g31720-like [Cucurbita moschata] >KAG7030330.1 B...	[more]
XP_023545398.1	1.5e-25	51.15	B3 domain-containing protein At2g31720-like [Cucurbita pepo subsp. pepo]	[more]
XP_008445569.1	3.6e-08	30.86	PREDICTED: putative B3 domain-containing protein At3g49610 [Cucumis melo]	[more]

BLAST of HG10006559 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006559 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9G9	3.7e-27	53.44	B3 domain-containing protein At2g31720-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1G587	2.4e-26	51.91	B3 domain-containing protein At2g31720-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7VC33	1.7e-08	30.86	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BD17	1.7e-08	30.86	putative B3 domain-containing protein At3g49610 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LRL4	2.5e-07	28.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G365090 PE=4 SV=1	[more]

BLAST of HG10006559 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005508	B3 domain-containing protein At2g31720-like	PFAM	PF03754	DUF313	coord: 109..182 e-value: 1.7E-6 score: 28.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 112..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006559.1	HG10006559.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding