HG10006527 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006527
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	pathogenesis-related protein PR-4-like
Location	Chr07: 19562150 .. 19562746 (+)
RNA-Seq Expression	HG10006527
Synteny	HG10006527

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAGAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTAAGTAAATCTTCTCGATTGTTGATGAGTTTTTAACTGCATTTGTAAGCATTTTTCGTCCCTACACAAAATCATCATGTTTTAAAGTAATTTTAAAAGTCGTTTAATCTATCATAAAAAGAAGAATTTTTTTTTTAAGCTGAGAAACCTTTATGGGATGTAATGCAGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAA

mRNA sequence

ATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAGAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAA

Coding sequence (CDS)

ATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAGAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAA

Protein sequence

MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC

Homology

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BLAST of HG10006527 vs. NCBI nr
Match: XP_008456018.1 (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa] >TYK18424.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. NCBI nr
Match: XP_038890575.1 (pathogenesis-related protein PR-4-like [Benincasa hispida])

HSP 1 Score: 285.8 bits (730), Expect = 2.0e-73
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLS+ANAQSA NVRATYHLYNPQ+INWDYLRASVYCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSMANAQSANNVRATYHLYNPQNINWDYLRASVYCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGAS IVRIVDQCSNGGLDLDVNVF++
Sbjct: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASTIVRIVDQCSNGGLDLDVNVFKQ 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           +DTNGNGNFRGHL VNY+FVNC
Sbjct: 121 LDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. NCBI nr
Match: XP_004139239.1 (pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical protein Csa_019369 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M +GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGN RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. NCBI nr
Match: XP_022999102.1 (pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo] >XP_023547311.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 2.9e-72
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GS +MIL LALG+LSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. NCBI nr
Match: XP_022946136.1 (pathogenesis-related protein PR-4-like [Cucurbita moschata])

HSP 1 Score: 280.4 bits (716), Expect = 8.5e-72
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+ SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

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BLAST of HG10006527 vs. ExPASy Swiss-Prot
Match: P32045 (Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-58
Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MERGSIMMILVLALG-VLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKP 60
           MER + + +    +  ++++A AQSATNVRATYHLYNPQ+INWD   ASVYCATWDA+KP
Sbjct: 1   MERVNKLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKP 60

Query: 61  LEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFR 120
           LEWRRRYGWTAFCGP GP GQASCGRCLRVTNT TG  E VRIVDQC NGGLDLDVNVF 
Sbjct: 61  LEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFN 120

Query: 121 RIDTNGNGNFRGHLIVNYEFVNC 143
           R+DTNG G  RG+L VNYEFVNC
Sbjct: 121 RLDTNGLGYQRGNLNVNYEFVNC 143

[Close]

BLAST of HG10006527 vs. ExPASy Swiss-Prot
Match: P29063 (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 98/137 (71.53%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 6   IMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRR 65
           + + L++   ++++A AQSATNVR+TYHLYNPQ+INWD   AS +CATWDA+KPL WR++
Sbjct: 9   LCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQCSNGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFRGHLIVNYEFVNC 143
            G  +GHLIVNYEFVNC
Sbjct: 129 LGYQQGHLIVNYEFVNC 145

[Close]

BLAST of HG10006527 vs. ExPASy Swiss-Prot
Match: P29062 (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 98/137 (71.53%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 6   IMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRR 65
           + + L++   V+++A AQSATNVR+TYHLYNPQ+INWD   AS +CATWDA+KPL WR++
Sbjct: 9   LCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQCSNGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFRGHLIVNYEFVNC 143
            G  +GHL VNYEFVNC
Sbjct: 129 VGYQQGHLTVNYEFVNC 145

[Close]

BLAST of HG10006527 vs. ExPASy Swiss-Prot
Match: P09761 (Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 24  SATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKPL WR++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQCSNGGLDLDVNVFR+IDT+GNGN +GHLIVNY+FV+C
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDC 197

[Close]

BLAST of HG10006527 vs. ExPASy Swiss-Prot
Match: P09762 (Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 24  SATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKP  WR +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQCSNGGLDLD+NVF++IDT+G GN +GHLIVNY+FVNC
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNC 196

[Close]

BLAST of HG10006527 vs. ExPASy TrEMBL
Match: A0A5D3D4G8 (Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001500 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. ExPASy TrEMBL
Match: A0A1S3C3H6 (pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. ExPASy TrEMBL
Match: A0A0A0LIC8 (Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.4e-73
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           M +GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGN RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. ExPASy TrEMBL
Match: A0A6J1K9X1 (pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC111493583 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+GS +MIL LALG+LSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. ExPASy TrEMBL
Match: A0A6J1G2U1 (pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC111450306 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPL 60
           ME+ SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYLRASV+CATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]

BLAST of HG10006527 vs. TAIR 10
Match: AT3G04720.1 (pathogenesis-related 4 )

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-48
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 0


Query: 23  QSATNVRATYHLYNPQDINWDYLRASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYH YNP   NWD    S YC+TWDA+KP  WR +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 142
           CG+CLRV NT T A+  VRIVDQCSNGGLDLDV +F +IDT+G G  +GHLIV+Y+FV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

The following BLAST results are available for this feature:

BLAST of HG10006527 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456018.1	1.4e-74	95.07	PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 p...	[more]
XP_038890575.1	2.0e-73	92.96	pathogenesis-related protein PR-4-like [Benincasa hispida]	[more]
XP_004139239.1	1.3e-72	92.96	pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical pro...	[more]
XP_022999102.1	2.9e-72	90.85	pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathog...	[more]
XP_022946136.1	8.5e-72	91.55	pathogenesis-related protein PR-4-like [Cucurbita moschata]	[more]

BLAST of HG10006527 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32045	9.5e-58	74.13	Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P29063	1.5e-55	71.53	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P29062	2.6e-55	71.53	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P09761	5.8e-55	77.31	Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1	[more]
P09762	1.2e-52	74.79	Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1	[more]

BLAST of HG10006527 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4G8	6.8e-75	95.07	Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C3H6	6.8e-75	95.07	pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 P...	[more]
A0A0A0LIC8	6.4e-73	92.96	Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4...	[more]
A0A6J1K9X1	1.4e-72	90.85	pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114935...	[more]
A0A6J1G2U1	4.1e-72	91.55	pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of HG10006527 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04720.1	1.1e-48	69.17	pathogenesis-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 58..76 score: 79.3 coord: 77..95 score: 75.79 coord: 117..141 score: 66.4 coord: 96..114 score: 79.3
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 24..142 e-value: 3.2E-59 score: 198.1
IPR001153	Barwin domain	PROSITE	PS51174	BARWIN_3	coord: 23..142 score: 81.369522
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 23..142 e-value: 6.4E-56 score: 189.4
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 23..142
None	No IPR available	PANTHER	PTHR46351:SF6	PATHOGENESIS-RELATED PROTEIN PR-4A	coord: 6..142
IPR044301	Pathogenesis-related protein-4	PANTHER	PTHR46351	WOUND-INDUCED PROTEIN WIN2	coord: 6..142
IPR018226	Barwin, conserved site	PROSITE	PS00771	BARWIN_1	coord: 83..91
IPR018226	Barwin, conserved site	PROSITE	PS00772	BARWIN_2	coord: 135..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006527.1	HG10006527.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0006952	defense response
molecular_function	GO:0004540	ribonuclease activity