HG10006487 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006487
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	Chr07: 19121867 .. 19124247 (+)
RNA-Seq Expression	HG10006487
Synteny	HG10006487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAACTGTCTTCTTTAGCCAAAATGGCAATGGTAGCTCAAATCAGAGTTCGAAATTTAAATGCTTACAGATTTTTTGTTTTCTTTTTTTGTAGTTCTTAATTTTGTCCTTATATTTTTCAGGTCCGACTACAGTTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCTTTGGGGACACAACCAATGGTTGCTTATCAACTGGTACATTCTCATGAGTAACGCCCTCTTAGTTTCTCAACGTTAGATACAGAGTGTCTATTGGAACTATTGGGACATTATAACTCCACTCGCAAGCAAATTGGTTGCGCAGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCCGATGATGAGAATCGTCATGTTGGTGATCTTGGAAATTTGGTTGCCGGTGATGATGGTCTGTTTAATGCTATTCCACACTACTTTTCATTTTCTCCCTGAAGTAAATTTTAGTAAACTGGACCCCAAACGATTAACCCCTCCAAAATGCATAATACTGGATTCCTTCAAGGAATCCAGCTTCCTCTCCACCCTCCTATCAATGACAATATTTCAATAAATGTCACTGAATTTCATGTTAAAGCACTTTTTTTCTTTTTCTTTTTGAGGATTAATTTGATACAACTGTTGTTACGTCTACTGTACAGGTACTGATCTGTTATTATTGACGTCTACTGTACAGGTACTGCTACTTTCTCTATTATTGACAAGCAGGTTTGGACGATTTTATATTTATTTGGATATTTCACCATCTCTTCTATCAACTAGTGAGCATTACGTCTTTCTATGTTATGCAGATTTCCCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTAATTTTATAAATCTTCATTGCTATATTTCTAATAAGAATCCCATACATTTACTACTAGTCTAATCATTCAAAGATTTTAATGATTGGCCTAAAGAAGTTAACATACAATTGCATTAATTGTAACCATGCTTCATTATCACCTTGGTATTAATTTGATCTTCTTTGAATTCACTGATATACTTTTGGCGTTCCTCCCATTTTTCACTTTGTATGTGTACAACGTCCATATTCTTCGCATCTGTATCACTTTTTTTTTTGTTTTGACAATTATGTGGGGTGTGGGGATCGAACCTCAGACCTTGAGGTTGGTAGTACATGTTTTTGTCGGTCGAGCTATGTTCATGTTGGTTTGTATCACCAATTTTACTTGAATCTGAAACTAAAAGATTATTTAATGTGCTGAAAGTATAAATCTTTGAAATATTTGTTTCCCTTTAATTTCATGTAAGCCTCCCTTTCGTCTCTGCTTGTCAAGTAGGCGACATGATCAGGATGACCAAATAAAGAAATCTGAAGCATAATCTGTGAACTGTTATGATCTTGTCTGCAGGTCGAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGTTGTGGTAAGTTACCATCTGATACTAATTTTCACATTGCTTCTGATTATGCTATGCTATCCATACAATTCGAAAGAAGGGACAGGATATATCAGCCTCTCATGTTTACTTGTTCAAACCCACTTTTTTTTTTTACAATACGTGGGGATCGAACCTAAAATCTCGAGGTTGATAGTACAAGTTCATGTTAGTTGAGCTATGCTCATGTCGGCTCAAACTTGCAAGTCTCTCTATTGTTAGGTGGATGTCTTTTAATTAATTTAAGAAGTTTTATACTCTTCTAGAGAACATACGGTTCTAAATAACAGCTCTTACACTAACATATATGTATAATGACGTTATGTGACAAATTGAGCAATATTTGATGAATGAAGCTGGTTAGACATTACCTTTTCTCATAGGTATGGGTTCGATTTGTAAAATTATTATGGTTAAAATGCCACTGTTTCATTTCATTGTAGTCCCTTTATTAGTTTGTTGTTGATTTTTTCTTTAAAAAAAAATTTCTATTAGCATTCTCTTTGTAAATTTAGAAAATATATTCCATAGTATTGTTTCTTACATGAAAATTATTATCATTATTTAACCATTCTTGATGAAATTTACAAATATACACACACCATGACTTTGCTGGTTTTAAAAGTGATTTGTTATACAACATACTTTACATGCATTTTCTTAACTTGCACAAACAGAGTTGGCACCTTGGATGGATTGGGACTTTTTTTTCTGGGACAAATCTCTTATCAAATACTGGAGGCTAAACTTTTTTCGTTGGCATAAGGCATTTGTTATTGTGTTTCTTGCAGGCGTTATTGGGCTGCAAGAGTGA

mRNA sequence

ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAACTGTCTTCTTTAGCCAAAATGGCAATGGTCCGACTACAGTTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCTTTGGGGACACAACCAATGGTTGCTTATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCCGATGATGAGAATCGTCATGTTGGTGATCTTGGAAATTTGGTTGCCGGTGATGATGGTACTGCTACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGTTGTGGCGTTATTGGGCTGCAAGAGTGA

Coding sequence (CDS)

ATGGTGAAAGCTGTAGCTGTTCTTGAGAGCAATCAGGGAGTCAGTGGAACTGTCTTCTTTAGCCAAAATGGCAATGGTCCGACTACAGTTACAGGAAATATTTCTGGTCTTAAGGCAGGGCTTCATGGCTTCCATGTTCATGCCTTTGGGGACACAACCAATGGTTGCTTATCAACTGGGCCACATTTCAACCCTGAAGGCAAAGACCATGGTGCCCCCGATGATGAGAATCGTCATGTTGGTGATCTTGGAAATTTGGTTGCCGGTGATGATGGTACTGCTACTTTCTCTATTATTGACAAGCAGATTTCCCTCGTTGGACCAAATTCCGTTCTTGGAAGGTCTATTGTTGTCCATGCAGATCCTGATGATCTTGGCAGGGGTCGAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATAGGTTGTGGCGTTATTGGGCTGCAAGAGTGA

Protein sequence

MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADPDDLGRGRTELSLTTGNAGERIGCGVIGLQE

Homology

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BLAST of HG10006487 vs. NCBI nr
Match: XP_038890446.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-78
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESN+GVSGTVFFSQN NGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNRGVSGTVFFSQNDNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAP DENRHVGDLGNLVAGDDGTATFSI+DKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPHDENRHVGDLGNLVAGDDGTATFSIVDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG+TELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of HG10006487 vs. NCBI nr
Match: XP_004139207.1 (superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >XP_031736634.1 superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >KGN60844.1 hypothetical protein Csa_019273 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGVSG++FFSQNGNGPT +TGNISGLKAGLHGFHVHA GDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of HG10006487 vs. NCBI nr
Match: XP_008455574.1 (PREDICTED: superoxide dismutase [Cu-Zn] isoform X1 [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+TGNISGLKAGLHGFHVHA GDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of HG10006487 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.0e-75
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTV GNISGL  GLHGFHVHA GDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG+TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of HG10006487 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 5.2e-75
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTV GNISGL  GLHGFHVHA GDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG+TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of HG10006487 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.6e-65
Identity = 115/151 (76.16%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAV VL S++GVSGTV F+Q G+GPTTVTGN+SGL+ GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLGRG  ELS  TGNAG R+ CGVIGLQ
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151

[Close]

BLAST of HG10006487 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 1.5e-64
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVL S++GVSGT+FFSQ G+GPTTVTGN+SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NSV+GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. ExPASy Swiss-Prot
Match: P22233 (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.6e-64
Identity = 112/151 (74.17%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           M KAV VL S++GVSGTV+F+Q G+GPTTVTGN+SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PH+NP GK+HGAP+D+ RH GDLGN+  GDDGTATF+IID QI L GPNS++GR++VVHA
Sbjct: 61  PHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           +PDDLGRG  ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 EPDDLGRGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 244.2 bits (622), Expect = 9.5e-64
Identity = 110/151 (72.85%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVL S++GVSGT+FF+Q+G+ PTTVTGN+SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PH+NP GK+HGAP+DE RH GDLGN+  G+DGTA+F++ DKQI L GP S++GR++VVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+G  ELS TTGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. ExPASy Swiss-Prot
Match: Q8L5E0 (Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea OX=4146 GN=OLE5 PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAV VL S++GV+GTV+F+Q G+GPTTVTGN+SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MVKAVTVLNSSEGVTGTVYFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP GK+HGAP DENRH GDLGN+  G+DGTA  +I+DKQI L GP+S++GR++VVH+
Sbjct: 61  PHFNPVGKEHGAPGDENRHAGDLGNITVGEDGTAAINIVDKQIPLTGPHSIIGRAVVVHS 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLGRG  ELS +TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGRGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. ExPASy TrEMBL
Match: A0A0A0LIH2 (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGVSG++FFSQNGNGPT +TGNISGLKAGLHGFHVHA GDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGSIFFSQNGNGPTIITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of HG10006487 vs. ExPASy TrEMBL
Match: A0A1S3C1D1 (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+TGNISGLKAGLHGFHVHA GDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERIGCGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]

BLAST of HG10006487 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTV GNISGL  GLHGFHVHA GDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG+TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of HG10006487 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 142/152 (93.42%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGV GTVFF+QNGNGPTTV GNISGL  GLHGFHVHA GDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQE 153
           DPDDLGRG+TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]

BLAST of HG10006487 vs. ExPASy TrEMBL
Match: A0A5D3D4B3 (Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001080 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.1e-74
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           MVKAVAVLESNQGVSGT+FFSQNGNGPTT+TGNISGLKAGLHGFHVHA GDTTNGCLSTG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCG 147
           DPDDLGRG TELSLTTGNAGERIGCG
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCG 146

[Close]

BLAST of HG10006487 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 109/151 (72.19%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV+G +SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-63
Identity = 109/151 (72.19%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MVKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTG 60
           M K VAVL S++GV+GT+FF+Q G+G TTV+G +SGLK GLHGFHVHA GDTTNGC+STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L GPNS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ CG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]

BLAST of HG10006487 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-49
Identity = 94/148 (63.51%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 3   KAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTGPH 62
           KAVAVL+    V G V  +Q+ +GPTTV   I+GL  G HGFH+H FGDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L GPNSV+GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGRTELSLTTGNAGERIGCGVIGL 151
           DDLG+G  ELSLTTGNAG R+ CGVIGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of HG10006487 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 191.0 bits (484), Expect = 6.8e-49
Identity = 89/150 (59.33%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTGP 61
           ++AVA++  +  V G + F Q+ +G T VTG ISGL  G HGFH+H+FGDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGRTELSLTTGNAGERIGCGVIGLQ 152
           PDDLG+G  +LS +TGNAG R+GCG+IGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of HG10006487 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-39
Identity = 74/127 (58.27%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 2   VKAVAVLESNQGVSGTVFFSQNGNGPTTVTGNISGLKAGLHGFHVHAFGDTTNGCLSTGP 61
           ++AVA++  +  V G + F Q+ +G T VTG ISGL  G HGFH+H+FGDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRG 129
           PDDLG+G
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:

BLAST of HG10006487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890446.1	6.5e-78	96.71	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Benincasa hispida]	[more]
XP_004139207.1	2.5e-77	95.39	superoxide dismutase [Cu-Zn] 1 [Cucumis sativus] >XP_031736634.1 superoxide dism...	[more]
XP_008455574.1	7.2e-77	95.39	PREDICTED: superoxide dismutase [Cu-Zn] isoform X1 [Cucumis melo]	[more]
KAG7030279.1	3.0e-75	94.08	Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022999148.1	5.2e-75	94.08	superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of HG10006487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93258	6.6e-65	76.16	Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
Q07796	1.5e-64	74.83	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2	[more]
P22233	5.6e-64	74.17	Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea OX=3562 GN=SODCC PE=2 SV=1	[more]
P27082	9.5e-64	72.85	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ...	[more]
Q8L5E0	1.2e-63	72.85	Superoxide dismutase [Cu-Zn] 2 OS=Olea europaea OX=4146 GN=OLE5 PE=1 SV=2	[more]

BLAST of HG10006487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIH2	1.2e-77	95.39	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_2G013250 PE=3 SV=...	[more]
A0A1S3C1D1	3.5e-77	95.39	Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1	[more]
A0A6J1KIS8	2.5e-75	94.08	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV...	[more]
A0A6J1G334	1.2e-74	93.42	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ...	[more]
A0A5D3D4B3	8.1e-74	95.21	Superoxide dismutase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456...	[more]

BLAST of HG10006487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08830.1	1.3e-63	72.19	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	1.3e-63	72.19	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	3.1e-49	63.51	copper/zinc superoxide dismutase 2	[more]
AT5G18100.1	6.8e-49	59.33	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	2.9e-39	58.27	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 98..120 score: 57.24 coord: 79..88 score: 70.93 coord: 123..149 score: 65.67 coord: 43..65 score: 80.1
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 11..148 e-value: 5.2E-50 score: 169.2
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 2..145 e-value: 2.61989E-61 score: 183.616
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 1..152 e-value: 6.3E-67 score: 226.5
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 2..150
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..152
None	No IPR available	PANTHER	PTHR10003:SF84	SUPEROXIDE DISMUTASE [CU-ZN]	coord: 1..152
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006487.1	HG10006487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0046872	metal ion binding