HG10006481 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006481
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L18
Location	Chr07: 19043679 .. 19044149 (-)
RNA-Seq Expression	HG10006481
Synteny	HG10006481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTCTATCACAGGTTCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAAGTGAAGAAATCCAAGAATCCGAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAACGGTTCGTTTCAGCATCACTTACGCACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTCGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATTTATCTGGAGTAA

mRNA sequence

ATGGATGCTCTATCACAGGTTCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAAGTGAAGAAATCCAAGAATCCGAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAACGGTTCGTTTCAGCATCACTTACGCACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTCGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATTTATCTGGAGTAA

Coding sequence (CDS)

ATGGATGCTCTATCACAGGTTCATTATGCACCCAGAAGTTTCTTTGGTGTAGAGGACTTCTTAGATGATGATAATAGTCGGCCATATACATACCAGAAAGTGAAGAAATCCAAGAATCCGAAAAAGCACATATCATTTAAGCAACGGACGGTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAACGGTTCGTTTCAGCATCACTTACGCACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTAAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTGGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTCGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATTGATGTAAAAATTTATCTGGAGTAA

Protein sequence

MDALSQVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

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BLAST of HG10006481 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VH+APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG ILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of HG10006481 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. NCBI nr
Match: KAA0063646.1 (putative manganese-transporting ATPase PDR2 [Cucumis melo var. makuwa] >TYK18379.1 putative manganese-transporting ATPase PDR2 [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6    QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
            +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 1240 EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 1299

Query: 66   RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
            RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 1300 RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 1359

Query: 126  TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
            TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 1360 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 1390

[Close]

BLAST of HG10006481 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           + HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

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BLAST of HG10006481 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 29/92 (31.52%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 59  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREA 118
           L V  S + + A +   V  K +A A T   D+K+ LK+ +D  A  AVG++LAERA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 119 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 151
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

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BLAST of HG10006481 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-04
Identity = 30/92 (32.61%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 59  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREA 118
           L VF S + +   +      + +A A +  KD+KA LK+ +D  A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 119 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 151
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

[Close]

BLAST of HG10006481 vs. ExPASy Swiss-Prot
Match: B1LWR0 (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 29/92 (31.52%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 59  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREA 118
           L VF S + +   +   V  K +A A +  K +K  LK+ +D+ A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 119 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 151
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

[Close]

BLAST of HG10006481 vs. ExPASy Swiss-Prot
Match: A5FZU9 (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 30/110 (27.27%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 41  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSD 100
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ LK+ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 101 IPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 151
             A  AVG+++AERA+EA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

[Close]

BLAST of HG10006481 vs. ExPASy Swiss-Prot
Match: B7L0T4 (50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688) OX=440085 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 59  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREA 118
           L VF S + +   +      + +A A +  KD+K+ LK+ +D  A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDAAGRTLAAASSLDKDLKSSLKTGADKAAAEAVGKLVAERAKAA 88

Query: 119 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 151
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

[Close]

BLAST of HG10006481 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.7e-75
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VH+APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG ILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. ExPASy TrEMBL
Match: A0A5A7VB47 (Putative manganese-transporting ATPase PDR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001020 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6    QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
            +VH APRSFFGVEDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 1240 EVHCAPRSFFGVEDFLDDDNSRPYTYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 1299

Query: 66   RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
            RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 1300 RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 1359

Query: 126  TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
            TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 1360 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 1390

[Close]

BLAST of HG10006481 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           + HYAPRSFFGVEDF+DDDNSRPYTYQK KKSKNPKKH+SFKQRTVAYMEPFTLDVFISK
Sbjct: 37  EAHYAPRSFFGVEDFVDDDNSRPYTYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRIL+ERA+EADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILSERAKEADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 6   QVHYAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISK 65
           +VH APRSFFG+EDFLDDDNSRPYTYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISK
Sbjct: 37  EVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISK 96

Query: 66  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASY 125
           RFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVGRILAERAREADVYTASY
Sbjct: 97  RFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASY 156

Query: 126 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE
Sbjct: 157 TPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 187

[Close]

BLAST of HG10006481 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-71
Identity = 129/148 (87.16%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 9   YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 68
           +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 42  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 101

Query: 69  SASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPR 128
           SASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++GRIL+ERA+EADVYTASYTPR
Sbjct: 102 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 161

Query: 129 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 162 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 189

[Close]

BLAST of HG10006481 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-71
Identity = 129/148 (87.16%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 9   YAPRSFFGVEDFLDDDNSRPYTYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFV 68
           +APRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQRTVAYMEPFTLDVFISKRFV
Sbjct: 87  FAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFV 146

Query: 69  SASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPR 128
           SASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++GRIL+ERA+EADVYTASYTPR
Sbjct: 147 SASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPR 206

Query: 129 ERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           ++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 207 DQDKFEGKIRAVVQSLIDNGIDVKIYLD 234

[Close]

BLAST of HG10006481 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-25
Identity = 57/119 (47.90%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 38  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKS 97
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 98  RSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 157
           R ++ AC AVG +LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

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BLAST of HG10006481 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-22
Identity = 50/113 (44.25%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 37  SKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLK 96
           +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+  + 
Sbjct: 72  AKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIP 131

Query: 97  SRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 150
           S  D  AC  +G+++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 132 SLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of HG10006481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890306.1	1.3e-76	99.34	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_022150717.1	1.2e-74	97.35	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_008455473.1	2.6e-74	96.69	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]
KAA0063646.1	2.6e-74	96.69	putative manganese-transporting ATPase PDR2 [Cucumis melo var. makuwa] >TYK18379...	[more]
XP_022999138.1	3.4e-74	95.36	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]

BLAST of HG10006481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C3MAZ6	1.3e-04	31.52	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]
B1Z777	2.3e-04	32.61	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
B1LWR0	3.0e-04	31.52	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]
A5FZU9	3.9e-04	27.27	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
B7L0T4	5.1e-04	31.52	50S ribosomal protein L18 OS=Methylorubrum extorquens (strain CM4 / NCIMB 13688)...	[more]

BLAST of HG10006481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBH5	5.7e-75	97.35	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3C286	1.3e-74	96.69	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A5A7VB47	1.3e-74	96.69	Putative manganese-transporting ATPase PDR2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1KIR9	1.7e-74	95.36	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A0A0LLI4	2.8e-74	96.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]

BLAST of HG10006481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	1.3e-71	87.16	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	1.3e-71	87.16	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	5.4e-25	47.90	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	3.3e-22	44.25	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 35..150 e-value: 7.2E-9 score: 36.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 7..156
None	No IPR available	GENE3D	3.30.420.100		coord: 33..150 e-value: 5.5E-17 score: 64.2
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 7..156
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 47..149 e-value: 2.22008E-22 score: 83.7435
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 35..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006481.1	HG10006481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0019829	ATPase-coupled cation transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome